Strain Fitness in Sphingobium sp. HT1-2 around GFF3229

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,283,828	+				+0.4
3,283,841	-				-1.4
3,283,841	-				-0.3
3,283,843	+				-0.7
3,283,858	+				-2.3
3,283,859	+				-1.8
3,283,861	-				+0.3
3,283,866	+				+0.9
3,283,866	+				-0.1
3,283,866	+				-1.4
3,283,866	+				+0.6
3,283,866	+				-1.1
3,283,866	-				-1.4
3,283,873	-				-2.1
3,283,874	-				-1.2
3,283,874	-				-0.3
3,283,874	-				-2.3
3,283,874	-				-0.6
3,283,896	+				+1.7
3,283,903	+				-0.8
3,283,904	-				+0.1
3,283,916	+				-0.6
3,283,929	+				+0.8
3,283,930	-				+0.2
3,283,937	-				-1.9
3,283,948	-		GFF3228	0.10	-0.5
3,283,950	+		GFF3228	0.10	+1.1
3,283,950	+		GFF3228	0.10	-0.4
3,283,958	+		GFF3228	0.11	-0.1
3,283,960	+		GFF3228	0.11	-0.1
3,283,961	+		GFF3228	0.12	+0.5
3,284,007	-		GFF3228	0.17	-2.7
3,284,089	+		GFF3228	0.26	-1.1
3,284,120	+		GFF3228	0.30	-0.6
3,284,220	+		GFF3228	0.41	-0.4
3,284,222	+		GFF3228	0.42	+0.6
3,284,232	+		GFF3228	0.43	-0.1
3,284,239	+		GFF3228	0.44	-0.9
3,284,256	+		GFF3228	0.46	-0.1
3,284,261	+		GFF3228	0.46	+0.2
3,284,261	+		GFF3228	0.46	+0.2
3,284,264	-		GFF3228	0.46	+0.7
3,284,264	-		GFF3228	0.46	-1.2
3,284,269	-		GFF3228	0.47	-0.7
3,284,315	+		GFF3228	0.52	-1.0
3,284,323	-		GFF3228	0.53	-2.7
3,284,328	-		GFF3228	0.54	-1.5
3,284,353	+		GFF3228	0.57	-2.0
3,284,370	+		GFF3228	0.59	+0.0
3,284,438	-		GFF3228	0.67	-1.6
3,284,438	-		GFF3228	0.67	+1.1
3,284,443	-		GFF3228	0.67	+1.0
3,284,454	+		GFF3228	0.68	-1.3
3,284,454	+		GFF3228	0.68	+0.7
3,284,463	+		GFF3228	0.69	-1.9
3,284,463	-		GFF3228	0.69	+1.3
3,284,464	-		GFF3228	0.70	+1.2
3,284,475	+		GFF3228	0.71	-0.6
3,284,483	+		GFF3228	0.72	-1.3
3,284,511	+		GFF3228	0.75	+0.0
3,284,521	-		GFF3228	0.76	+0.3
3,284,581	+		GFF3228	0.83	-0.6
3,284,581	+		GFF3228	0.83	+1.1
3,284,594	+		GFF3228	0.85	+0.3
3,284,594	+		GFF3228	0.85	-0.2
3,284,594	+		GFF3228	0.85	+0.6
3,284,594	+		GFF3228	0.85	-0.1
3,284,602	-		GFF3228	0.85	-0.6
3,284,602	-		GFF3228	0.85	-0.2
3,284,602	-		GFF3228	0.85	-0.5
3,284,621	-		GFF3228	0.88	-0.5
3,284,621	-		GFF3228	0.88	-0.7
3,284,621	-		GFF3228	0.88	+1.3
3,284,683	-				-2.2
3,284,685	+				+0.3
3,284,687	+				+0.8
3,284,688	-				+2.3
3,284,692	+				-0.1
3,284,693	-				+0.4
3,284,693	-				-0.3
3,284,741	-				-2.1
3,284,758	+				-0.1
3,284,767	-				-1.6
3,284,810	-		GFF3229	0.20	+0.1
3,284,811	+		GFF3229	0.20	+0.5
3,284,825	-		GFF3229	0.25	+0.0
3,284,826	+		GFF3229	0.25	+1.0
3,284,826	+		GFF3229	0.25	+0.0
3,284,826	+		GFF3229	0.25	+1.1
3,284,826	+		GFF3229	0.25	+1.5
3,284,826	+		GFF3229	0.25	-0.5
3,284,834	-		GFF3229	0.28	+0.4
3,284,834	-		GFF3229	0.28	+0.2
3,284,834	-		GFF3229	0.28	+0.0
3,284,834	-		GFF3229	0.28	+0.4
3,284,886	+		GFF3229	0.46	-0.1
3,284,891	+		GFF3229	0.48	+0.8
3,284,891	+		GFF3229	0.48	+0.3
3,284,891	+		GFF3229	0.48	+0.5
3,284,894	-		GFF3229	0.49	+1.2
3,284,901	+		GFF3229	0.52	-0.1
3,284,901	+		GFF3229	0.52	-0.2
3,284,906	+		GFF3229	0.54	-0.1
3,284,909	-		GFF3229	0.55	-0.2
3,284,909	-		GFF3229	0.55	-1.8
3,284,909	-		GFF3229	0.55	-0.5
3,284,909	-		GFF3229	0.55	-0.2
3,284,926	+		GFF3229	0.61	-0.5
3,284,951	+		GFF3229	0.70	+0.2
3,284,964	+		GFF3229	0.74	+0.7
3,284,969	+		GFF3229	0.76	+0.0
3,284,977	+		GFF3229	0.79	-1.3
3,284,985	-		GFF3229	0.82	-0.8
3,284,993	+		GFF3229	0.84	+0.7
3,285,007	-		GFF3229	0.89	-0.5
3,285,007	-		GFF3229	0.89	+0.2
3,285,007	-		GFF3229	0.89	-1.8
3,285,013	+				+0.1
3,285,013	+				-0.5
3,285,013	+				-1.9
3,285,013	+				-0.8
3,285,021	-				-0.3
3,285,021	-				-0.4
3,285,021	-				+1.4
3,285,026	-				-0.1
3,285,036	+				-2.0
3,285,046	+				+0.8
3,285,046	+				-0.9
3,285,061	-				-1.3
3,285,061	-				+0.7
3,285,061	-				-1.0
3,285,061	-				-0.8
3,285,063	+				+0.4
3,285,071	-				-0.1
3,285,074	+				-2.1
3,285,087	+				-0.8
3,285,137	+				-0.1
3,285,177	+				-0.5
3,285,231	+				-1.5
3,285,294	+				-0.1
3,285,306	+				+1.0
3,285,306	+				-0.6
3,285,311	+				+0.4
3,285,311	+				-0.6
3,285,311	-				-1.5
3,285,314	-				-0.3
3,285,314	-				+1.4
3,285,350	+				-0.4
3,285,353	+				-0.7
3,285,353	+				+0.4
3,285,386	+				+0.2
3,285,396	+				+0.2
3,285,412	+				-0.6
3,285,412	+				-0.5
3,285,420	-				-0.5
3,285,420	-				-0.1
3,285,420	-				-2.2
3,285,427	-				-0.6
3,285,447	+				-0.7
3,285,461	-				-0.3
3,285,501	+				-0.2
3,285,510	+				-1.1
3,285,514	+				+1.1
3,285,518	-				-0.3
3,285,522	-				+1.0
3,285,536	-				-1.5
3,285,542	+				-0.5
3,285,545	-				-0.5
3,285,564	-				-1.9
3,285,566	+				-0.3
3,285,566	+				-0.6
3,285,566	+				-0.3
3,285,571	+				-1.5
3,285,574	-				+1.0
3,285,576	+				-1.1
3,285,576	+				-0.6
3,285,576	+				-0.1
3,285,576	+				+0.6
3,285,576	+				+1.3
3,285,576	+				-0.3
3,285,576	+				-1.3
3,285,576	+				+0.0
3,285,576	+				+0.2
3,285,576	+				-0.3
3,285,576	+				-1.9
3,285,576	+				+0.9
3,285,576	+				-0.1
3,285,576	+				+0.5
3,285,576	+				-1.6
3,285,579	-				-0.8
3,285,584	-				+1.4
3,285,584	-				-1.9
3,285,584	-				-1.0
3,285,584	-				+0.5
3,285,584	-				+0.7
3,285,584	-				-0.5
3,285,584	-				-1.4
3,285,584	-				+0.8
3,285,584	-				-1.5
3,285,584	-				+0.3
3,285,584	-				+0.7
3,285,587	+				-0.3
3,285,602	-				-1.3
3,285,602	-				-0.8
3,285,616	-				-1.1
3,285,616	-				+0.7
3,285,628	+		GFF3230	0.10	-0.6
3,285,630	+		GFF3230	0.11	-0.5
3,285,636	-		GFF3230	0.14	-2.7
3,285,636	-		GFF3230	0.14	+1.0
3,285,636	-		GFF3230	0.14	-0.3
3,285,636	-		GFF3230	0.14	-1.4
3,285,642	+		GFF3230	0.16	-0.7
3,285,653	-		GFF3230	0.21	-1.3
3,285,655	+		GFF3230	0.22	-2.1
3,285,660	+		GFF3230	0.24	+0.2
3,285,668	-		GFF3230	0.28	-1.2
3,285,700	+		GFF3230	0.42	+0.4
3,285,700	+		GFF3230	0.42	-0.5
3,285,714	-		GFF3230	0.48	-0.5
3,285,716	+		GFF3230	0.49	-1.1
3,285,718	-		GFF3230	0.50	-0.8
3,285,732	-		GFF3230	0.56	-2.9
3,285,734	+		GFF3230	0.57	+0.4
3,285,756	-		GFF3230	0.66	-1.4
3,285,763	+		GFF3230	0.69	-0.1
3,285,763	+		GFF3230	0.69	+0.4
3,285,776	-		GFF3230	0.75	+0.0
3,285,779	-		GFF3230	0.76	-1.1
3,285,781	-		GFF3230	0.77	-1.3
3,285,844	-				-1.1
3,285,854	+				-0.5
3,285,862	-				+0.2
3,285,872	-				+0.0
3,285,888	-				-0.2
3,285,890	-				+0.0
3,285,892	-				-1.1
3,285,892	-				+0.6
3,285,903	+				+0.0
3,285,927	+				-0.1
3,285,939	-				-0.1
3,285,947	-				-0.4
3,285,948	+				+0.8
3,285,956	-				-0.9
3,285,961	+				+1.3
3,285,967	-		GFF3231	0.11	-0.7
3,285,973	+		GFF3231	0.11	+1.3
3,285,973	+		GFF3231	0.11	+0.5
3,285,981	-		GFF3231	0.12	-1.2
3,285,981	-		GFF3231	0.12	-1.3
3,285,981	-		GFF3231	0.12	+0.5
3,285,981	-		GFF3231	0.12	+0.0
3,285,988	+		GFF3231	0.13	+0.3
3,285,996	-		GFF3231	0.14	+0.4
3,286,008	+		GFF3231	0.16	-0.4
3,286,008	+		GFF3231	0.16	+0.4
3,286,008	+		GFF3231	0.16	-2.2
3,286,008	+		GFF3231	0.16	+0.5
3,286,008	+		GFF3231	0.16	-0.2
3,286,008	+		GFF3231	0.16	+0.3
3,286,008	+		GFF3231	0.16	-0.5
3,286,008	+		GFF3231	0.16	+0.0
3,286,008	+		GFF3231	0.16	-0.6
3,286,008	+		GFF3231	0.16	+1.2
3,286,008	+		GFF3231	0.16	-2.9
3,286,008	+		GFF3231	0.16	+0.0
3,286,008	+		GFF3231	0.16	-0.7
3,286,009	+		GFF3231	0.16	-0.8
3,286,009	+		GFF3231	0.16	+1.3
3,286,009	+		GFF3231	0.16	+0.9
3,286,009	+		GFF3231	0.16	-0.1
3,286,009	+		GFF3231	0.16	+0.4
3,286,016	-		GFF3231	0.16	-0.1
3,286,016	-		GFF3231	0.16	-0.6
3,286,016	-		GFF3231	0.16	-1.4
3,286,016	-		GFF3231	0.16	-0.7
3,286,016	-		GFF3231	0.16	-0.1
3,286,017	-		GFF3231	0.17	+1.3
3,286,017	-		GFF3231	0.17	+0.9
3,286,017	-		GFF3231	0.17	+0.2
3,286,017	-		GFF3231	0.17	-1.8
3,286,027	-		GFF3231	0.18	+0.3
3,286,035	-		GFF3231	0.19	-1.3