Strain Fitness in Sphingobium sp. HT1-2 around GFF3126

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3125 and GFF3126 are separated by 14 nucleotidesGFF3126 and GFF3127 are separated by 0 nucleotides GFF3125 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 3,197,405 to 3,199,189 GFF3125 GFF3126 - hypothetical protein, at 3,199,204 to 3,199,317 GFF3126 GFF3127 - Ribonuclease D (EC 3.1.26.3), at 3,199,318 to 3,200,484 GFF3127 Position (kb) 3199 3200Strain fitness (log2 ratio) -1 0 1at 3199.297 kb on - strand, within GFF3126

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
3,199,297 - GFF3126 0.82 -0.9

Or see this region's nucleotide sequence