Strain Fitness in Sphingobium sp. HT1-2 around GFF3074

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,142,582	-				-1.1
3,142,582	-				-1.0
3,142,582	-				-2.2
3,142,582	-				-0.8
3,142,582	-				-0.3
3,142,584	+				-0.0
3,142,584	+				+0.7
3,142,592	-		GFF3072	0.12	-1.8
3,142,596	+		GFF3072	0.14	+0.6
3,142,615	+		GFF3072	0.21	+0.3
3,142,621	-		GFF3072	0.24	-0.3
3,142,621	-		GFF3072	0.24	-1.1
3,142,621	-		GFF3072	0.24	-0.3
3,142,621	-		GFF3072	0.24	-0.7
3,142,623	+		GFF3072	0.24	-0.4
3,142,634	+		GFF3072	0.29	+1.1
3,142,634	+		GFF3072	0.29	-0.3
3,142,634	+		GFF3072	0.29	+1.0
3,142,642	-		GFF3072	0.32	-1.6
3,142,652	+		GFF3072	0.36	+1.0
3,142,652	+		GFF3072	0.36	-0.2
3,142,652	+		GFF3072	0.36	+0.9
3,142,666	+		GFF3072	0.41	+2.2
3,142,675	-		GFF3072	0.45	-1.7
3,142,679	-		GFF3072	0.46	+0.2
3,142,732	-		GFF3072	0.67	-1.9
3,142,746	-		GFF3072	0.73	-0.3
3,142,751	-		GFF3072	0.75	-0.5
3,142,772	+		GFF3072	0.83	+0.0
3,142,784	-		GFF3072	0.87	+0.4
3,142,819	+				-0.4
3,142,856	-				-1.2
3,142,872	+				-0.5
3,142,873	+				-0.6
3,142,881	-		GFF3073	0.10	-0.4
3,142,892	+		GFF3073	0.12	-1.9
3,142,892	+		GFF3073	0.12	-2.1
3,142,892	+		GFF3073	0.12	-0.8
3,142,892	+		GFF3073	0.12	-2.2
3,142,900	-		GFF3073	0.13	-0.5
3,142,900	-		GFF3073	0.13	+0.5
3,142,900	-		GFF3073	0.13	-0.0
3,142,900	-		GFF3073	0.13	+0.4
3,142,900	-		GFF3073	0.13	-0.6
3,142,900	-		GFF3073	0.13	+1.2
3,142,900	-		GFF3073	0.13	+0.1
3,142,900	-		GFF3073	0.13	-1.1
3,142,900	-		GFF3073	0.13	-1.6
3,142,900	-		GFF3073	0.13	+0.5
3,142,900	-		GFF3073	0.13	-0.0
3,142,900	-		GFF3073	0.13	-0.4
3,142,902	+		GFF3073	0.14	-0.7
3,142,905	-		GFF3073	0.14	-0.9
3,142,910	-		GFF3073	0.15	-1.0
3,142,934	-		GFF3073	0.18	+0.7
3,142,935	+		GFF3073	0.19	-0.7
3,142,940	+		GFF3073	0.19	-0.3
3,142,969	-		GFF3073	0.24	+1.1
3,142,969	-		GFF3073	0.24	-0.2
3,142,996	+		GFF3073	0.28	-1.8
3,143,022	-		GFF3073	0.32	-0.7
3,143,024	+		GFF3073	0.32	-0.8
3,143,026	+		GFF3073	0.32	-1.4
3,143,032	+		GFF3073	0.33	+0.7
3,143,038	+		GFF3073	0.34	+0.7
3,143,040	-		GFF3073	0.35	+0.9
3,143,062	-		GFF3073	0.38	+0.8
3,143,062	-		GFF3073	0.38	-0.3
3,143,064	+		GFF3073	0.38	+0.6
3,143,064	+		GFF3073	0.38	-1.1
3,143,064	+		GFF3073	0.38	-1.9
3,143,070	-		GFF3073	0.39	-0.1
3,143,099	+		GFF3073	0.43	+0.6
3,143,109	+		GFF3073	0.45	-1.3
3,143,109	-		GFF3073	0.45	-1.4
3,143,111	+		GFF3073	0.45	-0.5
3,143,111	+		GFF3073	0.45	-0.6
3,143,111	+		GFF3073	0.45	-0.1
3,143,111	+		GFF3073	0.45	+1.2
3,143,111	+		GFF3073	0.45	-1.6
3,143,119	-		GFF3073	0.47	-1.6
3,143,119	-		GFF3073	0.47	+0.5
3,143,119	-		GFF3073	0.47	-0.8
3,143,119	-		GFF3073	0.47	+0.4
3,143,157	+		GFF3073	0.52	-2.4
3,143,183	+		GFF3073	0.56	-1.5
3,143,192	+		GFF3073	0.58	+0.2
3,143,197	+		GFF3073	0.58	+0.9
3,143,200	-		GFF3073	0.59	+0.9
3,143,202	+		GFF3073	0.59	-0.3
3,143,205	-		GFF3073	0.60	+0.4
3,143,224	-		GFF3073	0.62	-0.4
3,143,229	+		GFF3073	0.63	-0.9
3,143,232	-		GFF3073	0.64	-0.7
3,143,234	+		GFF3073	0.64	+0.9
3,143,237	-		GFF3073	0.64	-0.8
3,143,237	-		GFF3073	0.64	+0.7
3,143,238	+		GFF3073	0.65	-0.6
3,143,242	-		GFF3073	0.65	+1.1
3,143,242	-		GFF3073	0.65	-0.3
3,143,242	-		GFF3073	0.65	+0.4
3,143,244	-		GFF3073	0.65	+0.2
3,143,248	+		GFF3073	0.66	-0.8
3,143,278	-		GFF3073	0.71	-1.3
3,143,285	+		GFF3073	0.72	-0.9
3,143,285	+		GFF3073	0.72	+0.2
3,143,302	+		GFF3073	0.74	-0.2
3,143,327	-		GFF3073	0.78	-2.6
3,143,332	-		GFF3073	0.79	+0.8
3,143,366	+		GFF3073	0.84	-0.2
3,143,388	+		GFF3073	0.87	-0.6
3,143,389	+		GFF3073	0.87	+0.6
3,143,389	+		GFF3073	0.87	+0.8
3,143,396	-		GFF3073	0.88	+1.4
3,143,396	-		GFF3073	0.88	+0.2
3,143,396	-		GFF3073	0.88	+0.7
3,143,422	+				-0.0
3,143,423	-				-1.4
3,143,430	-				+0.1
3,143,461	-				-1.4
3,143,467	+				-0.3
3,143,469	-				-1.7
3,143,475	-				-0.1
3,143,527	+				-1.8
3,143,527	+				-0.2
3,143,565	-				+0.7
3,143,599	-				-0.8
3,143,620	-		GFF3074	0.10	-1.5
3,143,622	+		GFF3074	0.10	+0.1
3,143,630	-		GFF3074	0.11	-0.1
3,143,630	-		GFF3074	0.11	+0.6
3,143,630	-		GFF3074	0.11	-2.1
3,143,637	-		GFF3074	0.11	+0.2
3,143,666	+		GFF3074	0.14	+0.4
3,143,667	+		GFF3074	0.14	+0.9
3,143,675	-		GFF3074	0.14	+0.8
3,143,675	-		GFF3074	0.14	+0.1
3,143,770	-		GFF3074	0.21	-2.6
3,143,797	-		GFF3074	0.23	-0.6
3,143,840	-		GFF3074	0.26	+1.4
3,143,844	+		GFF3074	0.27	+1.4
3,143,849	+		GFF3074	0.27	-0.7
3,143,849	+		GFF3074	0.27	-0.5
3,143,849	+		GFF3074	0.27	-0.7
3,143,849	+		GFF3074	0.27	+1.9
3,143,849	+		GFF3074	0.27	-0.6
3,143,849	+		GFF3074	0.27	-0.0
3,143,849	+		GFF3074	0.27	-0.0
3,143,849	+		GFF3074	0.27	-0.1
3,143,849	+		GFF3074	0.27	-1.1
3,143,849	+		GFF3074	0.27	-0.2
3,143,849	+		GFF3074	0.27	+0.4
3,143,849	+		GFF3074	0.27	+0.9
3,143,849	+		GFF3074	0.27	-0.4
3,143,849	+		GFF3074	0.27	+0.1
3,143,849	+		GFF3074	0.27	-0.6
3,143,849	+		GFF3074	0.27	-0.1
3,143,852	-		GFF3074	0.27	+0.3
3,143,852	-		GFF3074	0.27	-2.4
3,143,857	-		GFF3074	0.28	-0.7
3,143,857	-		GFF3074	0.28	-1.4
3,143,857	-		GFF3074	0.28	-0.9
3,143,857	-		GFF3074	0.28	-0.1
3,143,857	-		GFF3074	0.28	-0.4
3,143,857	-		GFF3074	0.28	-0.1
3,143,857	-		GFF3074	0.28	-2.0
3,143,857	-		GFF3074	0.28	+0.5
3,143,857	-		GFF3074	0.28	-0.6
3,143,857	-		GFF3074	0.28	+1.2
3,143,870	-		GFF3074	0.29	-0.2
3,143,919	-		GFF3074	0.32	-1.6
3,143,934	-		GFF3074	0.33	-0.4
3,143,934	-		GFF3074	0.33	-0.6
3,143,971	-		GFF3074	0.36	+1.0
3,144,008	+		GFF3074	0.39	-0.2
3,144,070	-		GFF3074	0.43	-2.0
3,144,070	-		GFF3074	0.43	+0.7
3,144,102	-		GFF3074	0.46	-0.4
3,144,103	+		GFF3074	0.46	+0.7
3,144,150	+		GFF3074	0.49	-1.5
3,144,157	-		GFF3074	0.50	-1.6
3,144,183	-		GFF3074	0.52	+0.1
3,144,212	+		GFF3074	0.54	-2.1
3,144,218	+		GFF3074	0.54	+0.2
3,144,218	+		GFF3074	0.54	+0.9
3,144,218	+		GFF3074	0.54	+0.9
3,144,246	-		GFF3074	0.56	-1.4
3,144,257	+		GFF3074	0.57	+0.5
3,144,262	+		GFF3074	0.57	-0.1
3,144,287	-		GFF3074	0.59	-0.4
3,144,289	+		GFF3074	0.59	-1.5
3,144,289	+		GFF3074	0.59	+0.9
3,144,297	-		GFF3074	0.60	-1.4
3,144,297	-		GFF3074	0.60	+1.1
3,144,297	-		GFF3074	0.60	+0.4
3,144,297	-		GFF3074	0.60	+1.3
3,144,297	-		GFF3074	0.60	-0.3
3,144,297	-		GFF3074	0.60	-0.1
3,144,299	-		GFF3074	0.60	-1.1
3,144,338	+		GFF3074	0.63	-0.7
3,144,338	+		GFF3074	0.63	+0.3
3,144,338	+		GFF3074	0.63	-0.3
3,144,346	-		GFF3074	0.64	-1.1
3,144,346	-		GFF3074	0.64	-0.4
3,144,346	-		GFF3074	0.64	-1.1
3,144,346	-		GFF3074	0.64	-0.1
3,144,346	-		GFF3074	0.64	-1.8
3,144,362	+		GFF3074	0.65	-1.0
3,144,365	-		GFF3074	0.65	-1.1
3,144,370	-		GFF3074	0.65	-1.3
3,144,370	-		GFF3074	0.65	+1.2
3,144,371	-		GFF3074	0.65	+0.3
3,144,391	+		GFF3074	0.67	-0.3
3,144,391	+		GFF3074	0.67	-0.6
3,144,391	+		GFF3074	0.67	-0.9
3,144,399	-		GFF3074	0.67	-1.0
3,144,399	-		GFF3074	0.67	+0.5
3,144,433	-		GFF3074	0.70	-0.8
3,144,464	-		GFF3074	0.72	-0.2
3,144,464	-		GFF3074	0.72	-1.4
3,144,491	-		GFF3074	0.74	-0.7
3,144,564	+		GFF3074	0.80	-0.4
3,144,572	+		GFF3074	0.80	+0.1
3,144,572	-		GFF3074	0.80	+0.5
3,144,572	-		GFF3074	0.80	-0.7
3,144,572	-		GFF3074	0.80	-0.6
3,144,572	-		GFF3074	0.80	-0.4
3,144,572	-		GFF3074	0.80	-1.4
3,144,572	-		GFF3074	0.80	+1.2
3,144,580	-		GFF3074	0.81	+0.5
3,144,587	+		GFF3074	0.81	-1.0
3,144,587	+		GFF3074	0.81	+1.3
3,144,587	+		GFF3074	0.81	-0.0
3,144,592	+		GFF3074	0.82	+0.7
3,144,595	-		GFF3074	0.82	-1.8
3,144,596	-		GFF3074	0.82	-1.0
3,144,626	-		GFF3074	0.84	-1.6
3,144,653	+		GFF3074	0.86	-0.1
3,144,655	-		GFF3074	0.86	+0.4
3,144,655	-		GFF3074	0.86	+0.6
3,144,657	+		GFF3074	0.86	+0.2
3,144,660	-		GFF3074	0.87	-0.2
3,144,677	+		GFF3074	0.88	-0.0
3,144,679	-		GFF3074	0.88	+0.5
3,144,700	-		GFF3074	0.90	-0.7
3,144,743	-				-1.0
3,144,744	-				+1.3
3,144,760	-				-0.4
3,144,801	+				+1.0
3,144,801	+				-2.1
3,144,809	-				-0.8
3,144,809	-				+1.6
3,144,842	+				-1.7
3,144,842	+				+0.9
3,144,850	-				-0.2
3,144,860	+				-0.5
3,144,860	+				+0.2
3,144,860	+				-0.2
3,144,860	+				+1.7
3,144,868	-				+0.4
3,144,868	-				-0.2
3,144,868	-				-0.8
3,144,868	-				-0.0
3,144,868	-				+0.6
3,144,868	-				-0.1
3,144,868	-				-0.9
3,144,868	-				-0.5
3,144,868	-				-1.4
3,144,868	-				-0.9
3,144,875	-				-1.4
3,144,897	-		GFF3075	0.16	-1.1
3,144,903	+		GFF3075	0.17	-0.8
3,144,908	+		GFF3075	0.18	-0.6
3,144,915	+		GFF3075	0.20	-1.9
3,144,915	+		GFF3075	0.20	-1.7
3,144,946	+		GFF3075	0.28	+0.7
3,144,965	+		GFF3075	0.33	+0.9
3,144,965	+		GFF3075	0.33	-1.0
3,144,966	-		GFF3075	0.33	-0.3
3,145,001	+		GFF3075	0.42	-0.9
3,145,001	+		GFF3075	0.42	-0.6
3,145,001	+		GFF3075	0.42	-0.8
3,145,006	+		GFF3075	0.44	+0.2
3,145,009	-		GFF3075	0.44	+0.4
3,145,009	-		GFF3075	0.44	-0.4
3,145,009	-		GFF3075	0.44	+0.4
3,145,009	-		GFF3075	0.44	-1.6
3,145,068	+		GFF3075	0.60	-0.8
3,145,119	+		GFF3075	0.73	+0.7
3,145,119	+		GFF3075	0.73	+1.1
3,145,127	-		GFF3075	0.75	+0.7
3,145,127	-		GFF3075	0.75	-2.2
3,145,127	-		GFF3075	0.75	+0.3
3,145,158	+		GFF3075	0.83	-0.4
3,145,165	+		GFF3075	0.85	-0.8
3,145,170	+		GFF3075	0.86	+0.2
3,145,170	+		GFF3075	0.86	-0.0
3,145,170	+		GFF3075	0.86	+0.9
3,145,173	-		GFF3075	0.87	+1.3
3,145,173	-		GFF3075	0.87	-1.3
3,145,178	-		GFF3075	0.88	-0.2
3,145,202	-				+0.2
3,145,234	-				+0.9
3,145,267	+				-2.7
3,145,317	+				-0.8
3,145,317	+				-0.8
3,145,322	+				-0.4
3,145,322	+				-0.6
3,145,322	+				-0.5
3,145,322	+				-0.0
3,145,322	+				-0.9
3,145,322	+				+0.2
3,145,322	+				-0.3
3,145,322	+				-0.3
3,145,322	+				+0.1
3,145,322	+				-1.2
3,145,325	-				+0.6
3,145,330	-				+0.6
3,145,330	-				+0.3
3,145,330	-				+0.6
3,145,330	-				-0.8
3,145,330	-				-0.7
3,145,359	+				-0.3
3,145,361	+				+0.6
3,145,361	+				-0.1
3,145,367	-		GFF3076	0.10	-1.5
3,145,369	-		GFF3076	0.10	+0.2
3,145,390	+		GFF3076	0.13	-0.0
3,145,398	+		GFF3076	0.13	+1.6
3,145,398	+		GFF3076	0.13	-0.9
3,145,398	-		GFF3076	0.13	-1.4
3,145,403	-		GFF3076	0.14	-0.6
3,145,405	-		GFF3076	0.14	-1.3
3,145,406	-		GFF3076	0.14	+1.4
3,145,406	-		GFF3076	0.14	+0.2
3,145,406	-		GFF3076	0.14	+0.7
3,145,406	-		GFF3076	0.14	-0.2
3,145,408	+		GFF3076	0.15	-1.4
3,145,408	+		GFF3076	0.15	-1.3
3,145,411	-		GFF3076	0.15	+0.2
3,145,411	-		GFF3076	0.15	-0.9
3,145,411	-		GFF3076	0.15	+0.4
3,145,411	-		GFF3076	0.15	-0.5
3,145,416	-		GFF3076	0.15	-0.0
3,145,416	-		GFF3076	0.15	+0.1
3,145,416	-		GFF3076	0.15	-0.4
3,145,429	+		GFF3076	0.17	+0.1
3,145,429	+		GFF3076	0.17	-0.0
3,145,437	-		GFF3076	0.18	-1.1
3,145,443	+		GFF3076	0.18	-2.7
3,145,446	-		GFF3076	0.18	-2.4
3,145,446	-		GFF3076	0.18	+1.7
3,145,449	-		GFF3076	0.19	-1.4
3,145,475	+		GFF3076	0.21	+0.2
3,145,483	+		GFF3076	0.22	+0.9
3,145,483	+		GFF3076	0.22	+0.2
3,145,493	-		GFF3076	0.23	+1.1
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3,145,520	+		GFF3076	0.26	-2.3
3,145,549	-		GFF3076	0.29	-1.1
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3,145,555	+		GFF3076	0.30	-0.9
3,145,555	+		GFF3076	0.30	+0.1
3,145,569	-		GFF3076	0.31	-1.1
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3,145,590	+		GFF3076	0.33	-3.3
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3,145,598	+		GFF3076	0.34	-1.9
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3,145,622	-		GFF3076	0.37	-1.6
3,145,651	+		GFF3076	0.40	-1.7
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3,145,675	+		GFF3076	0.42	-1.8
3,145,689	-		GFF3076	0.44	-0.0
3,145,704	+		GFF3076	0.45	-1.2
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3,145,820	+		GFF3076	0.57	+1.1
3,145,823	-		GFF3076	0.58	-1.0
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