Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3048 and GFF3049 are separated by 64 nucleotides GFF3049 and GFF3050 are separated by 123 nucleotides GFF3050 and GFF3051 are separated by 16 nucleotides
GFF3048 - Two-component nitrogen fixation transcriptional regulator FixJ, at 3,124,745 to 3,125,362
GFF3048
GFF3049 - Transcriptional regulator, Crp/Fnr family, at 3,125,427 to 3,126,185
GFF3049
GFF3050 - Prolipoprotein diacylglyceryl transferase, at 3,126,309 to 3,127,175
GFF3050
GFF3051 - SAM-dependent methyltransferase, MidA, at 3,127,192 to 3,128,241
GFF3051
Position (kb) 3126
3127
3128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3125.309 kb on + strand at 3125.309 kb on + strand at 3125.316 kb on - strand at 3125.316 kb on - strand at 3125.317 kb on - strand at 3125.317 kb on - strand at 3125.320 kb on + strand at 3125.341 kb on + strand at 3125.349 kb on - strand at 3125.352 kb on + strand at 3125.352 kb on + strand at 3125.352 kb on + strand at 3125.352 kb on + strand at 3125.352 kb on + strand at 3125.365 kb on - strand at 3125.371 kb on + strand at 3125.376 kb on + strand at 3125.457 kb on - strand at 3125.459 kb on + strand at 3125.476 kb on + strand at 3125.491 kb on - strand at 3125.512 kb on + strand, within GFF3049 at 3125.520 kb on + strand, within GFF3049 at 3125.528 kb on - strand, within GFF3049 at 3125.533 kb on - strand, within GFF3049 at 3125.553 kb on + strand, within GFF3049 at 3125.556 kb on + strand, within GFF3049 at 3125.557 kb on - strand, within GFF3049 at 3125.591 kb on + strand, within GFF3049 at 3125.610 kb on - strand, within GFF3049 at 3125.655 kb on - strand, within GFF3049 at 3125.728 kb on - strand, within GFF3049 at 3125.736 kb on - strand, within GFF3049 at 3125.781 kb on + strand, within GFF3049 at 3125.784 kb on - strand, within GFF3049 at 3125.791 kb on - strand, within GFF3049 at 3125.805 kb on + strand, within GFF3049 at 3125.805 kb on + strand, within GFF3049 at 3125.911 kb on - strand, within GFF3049 at 3125.945 kb on + strand, within GFF3049 at 3125.945 kb on + strand, within GFF3049 at 3125.994 kb on - strand, within GFF3049 at 3125.999 kb on - strand, within GFF3049 at 3125.999 kb on - strand, within GFF3049 at 3126.036 kb on - strand, within GFF3049 at 3126.043 kb on + strand, within GFF3049 at 3126.053 kb on - strand, within GFF3049 at 3126.098 kb on - strand, within GFF3049 at 3126.109 kb on + strand, within GFF3049 at 3126.159 kb on + strand at 3126.159 kb on + strand at 3126.164 kb on + strand at 3126.167 kb on - strand at 3126.169 kb on + strand at 3126.179 kb on + strand at 3126.188 kb on - strand at 3126.188 kb on - strand at 3126.206 kb on - strand at 3126.252 kb on - strand at 3126.278 kb on + strand at 3127.124 kb on + strand at 3127.132 kb on - strand at 3127.132 kb on - strand at 3127.133 kb on + strand at 3127.138 kb on + strand at 3127.159 kb on + strand at 3127.159 kb on + strand at 3127.182 kb on + strand at 3127.190 kb on - strand at 3127.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 3,125,309 + -1.5 3,125,309 + +0.3 3,125,316 - +0.5 3,125,316 - +0.0 3,125,317 - -1.5 3,125,317 - -0.1 3,125,320 + +0.6 3,125,341 + -0.5 3,125,349 - +0.4 3,125,352 + +0.7 3,125,352 + +0.6 3,125,352 + +0.4 3,125,352 + +0.1 3,125,352 + -2.7 3,125,365 - +0.3 3,125,371 + -1.6 3,125,376 + -1.4 3,125,457 - -0.1 3,125,459 + +0.0 3,125,476 + +0.9 3,125,491 - -0.1 3,125,512 + GFF3049 0.11 +0.2 3,125,520 + GFF3049 0.12 -0.7 3,125,528 - GFF3049 0.13 +1.3 3,125,533 - GFF3049 0.14 -0.4 3,125,553 + GFF3049 0.17 -1.8 3,125,556 + GFF3049 0.17 -1.1 3,125,557 - GFF3049 0.17 -0.8 3,125,591 + GFF3049 0.22 -0.8 3,125,610 - GFF3049 0.24 +0.6 3,125,655 - GFF3049 0.30 +0.5 3,125,728 - GFF3049 0.40 +0.3 3,125,736 - GFF3049 0.41 -0.4 3,125,781 + GFF3049 0.47 +1.1 3,125,784 - GFF3049 0.47 -1.3 3,125,791 - GFF3049 0.48 -0.2 3,125,805 + GFF3049 0.50 +0.1 3,125,805 + GFF3049 0.50 -0.1 3,125,911 - GFF3049 0.64 +0.8 3,125,945 + GFF3049 0.68 -0.6 3,125,945 + GFF3049 0.68 -0.5 3,125,994 - GFF3049 0.75 +0.7 3,125,999 - GFF3049 0.75 +0.8 3,125,999 - GFF3049 0.75 +0.9 3,126,036 - GFF3049 0.80 -1.5 3,126,043 + GFF3049 0.81 +0.1 3,126,053 - GFF3049 0.82 -0.5 3,126,098 - GFF3049 0.88 -0.8 3,126,109 + GFF3049 0.90 -1.1 3,126,159 + -1.1 3,126,159 + -0.4 3,126,164 + -0.4 3,126,167 - -1.1 3,126,169 + -1.9 3,126,179 + -2.0 3,126,188 - +0.3 3,126,188 - +0.7 3,126,206 - -0.6 3,126,252 - +2.1 3,126,278 + +0.3 3,127,124 + +0.1 3,127,132 - +0.3 3,127,132 - +0.7 3,127,133 + +0.6 3,127,138 + +0.0 3,127,159 + -1.3 3,127,159 + -1.0 3,127,182 + +0.0 3,127,190 - +0.9 3,127,194 + -0.4
Or see this region's nucleotide sequence