Strain Fitness in Sphingobium sp. HT1-2 around GFF3026

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,099,342	-		GFF3025	0.39	-0.4
3,099,359	+		GFF3025	0.40	+0.3
3,099,372	+		GFF3025	0.41	-0.6
3,099,394	+		GFF3025	0.43	+0.1
3,099,394	+		GFF3025	0.43	-0.9
3,099,402	-		GFF3025	0.43	-0.3
3,099,412	+		GFF3025	0.44	-0.2
3,099,412	+		GFF3025	0.44	+1.7
3,099,413	+		GFF3025	0.44	+0.9
3,099,413	+		GFF3025	0.44	+0.2
3,099,413	+		GFF3025	0.44	-0.5
3,099,413	+		GFF3025	0.44	+1.5
3,099,413	+		GFF3025	0.44	+0.4
3,099,413	+		GFF3025	0.44	-0.4
3,099,413	+		GFF3025	0.44	-1.1
3,099,413	+		GFF3025	0.44	-0.2
3,099,419	-		GFF3025	0.44	-2.5
3,099,421	-		GFF3025	0.45	+0.5
3,099,421	-		GFF3025	0.45	-0.5
3,099,421	-		GFF3025	0.45	-0.3
3,099,421	-		GFF3025	0.45	-1.8
3,099,442	+		GFF3025	0.46	+1.1
3,099,442	+		GFF3025	0.46	+2.0
3,099,442	+		GFF3025	0.46	-0.4
3,099,474	+		GFF3025	0.48	-1.0
3,099,482	-		GFF3025	0.49	-0.4
3,099,482	-		GFF3025	0.49	-0.5
3,099,484	+		GFF3025	0.49	+0.4
3,099,484	+		GFF3025	0.49	-0.1
3,099,484	+		GFF3025	0.49	-1.0
3,099,484	+		GFF3025	0.49	-0.0
3,099,484	+		GFF3025	0.49	+0.5
3,099,492	-		GFF3025	0.50	+0.1
3,099,492	-		GFF3025	0.50	-0.6
3,099,492	-		GFF3025	0.50	+1.1
3,099,492	-		GFF3025	0.50	+0.1
3,099,492	-		GFF3025	0.50	+2.7
3,099,492	-		GFF3025	0.50	-0.4
3,099,492	-		GFF3025	0.50	-2.4
3,099,509	-		GFF3025	0.51	+0.5
3,099,512	-		GFF3025	0.51	-1.6
3,099,561	+		GFF3025	0.55	+1.3
3,099,561	+		GFF3025	0.55	-0.2
3,099,575	+		GFF3025	0.56	-2.0
3,099,582	+		GFF3025	0.56	-1.8
3,099,590	-		GFF3025	0.57	-0.1
3,099,590	-		GFF3025	0.57	-0.2
3,099,600	+		GFF3025	0.57	+1.5
3,099,600	+		GFF3025	0.57	+0.3
3,099,604	-		GFF3025	0.58	+1.3
3,099,633	-		GFF3025	0.60	-1.3
3,099,657	-		GFF3025	0.61	-0.6
3,099,711	+		GFF3025	0.65	-0.9
3,099,728	-		GFF3025	0.66	+0.3
3,099,730	+		GFF3025	0.67	+0.8
3,099,737	+		GFF3025	0.67	-2.4
3,099,757	-		GFF3025	0.68	+0.5
3,099,762	-		GFF3025	0.69	-1.4
3,099,785	-		GFF3025	0.70	-1.0
3,099,809	-		GFF3025	0.72	+0.6
3,099,817	+		GFF3025	0.73	+0.8
3,099,830	+		GFF3025	0.74	+0.7
3,099,830	+		GFF3025	0.74	-0.9
3,099,833	+		GFF3025	0.74	-1.1
3,099,835	+		GFF3025	0.74	+0.3
3,099,838	-		GFF3025	0.74	-1.5
3,099,843	-		GFF3025	0.75	-0.0
3,099,843	-		GFF3025	0.75	-1.3
3,099,847	-		GFF3025	0.75	+0.7
3,099,848	-		GFF3025	0.75	-0.6
3,099,851	-		GFF3025	0.75	+0.4
3,099,876	+		GFF3025	0.77	+1.2
3,099,876	+		GFF3025	0.77	-0.5
3,099,876	+		GFF3025	0.77	+0.0
3,099,876	+		GFF3025	0.77	+0.3
3,099,876	+		GFF3025	0.77	+2.1
3,099,876	+		GFF3025	0.77	+0.7
3,099,876	+		GFF3025	0.77	+0.1
3,099,884	-		GFF3025	0.77	-0.6
3,099,884	-		GFF3025	0.77	+0.4
3,099,899	+		GFF3025	0.79	+0.7
3,099,903	-		GFF3025	0.79	-0.6
3,099,931	+		GFF3025	0.81	+1.3
3,099,931	+		GFF3025	0.81	+0.2
3,099,939	-		GFF3025	0.81	-0.6
3,099,941	+		GFF3025	0.82	+0.9
3,099,951	+		GFF3025	0.82	-1.5
3,099,959	-		GFF3025	0.83	+1.4
3,099,973	+		GFF3025	0.84	+0.7
3,099,974	+		GFF3025	0.84	-0.3
3,099,982	-		GFF3025	0.84	+0.3
3,099,982	-		GFF3025	0.84	-1.6
3,099,982	-		GFF3025	0.84	+0.5
3,099,991	-		GFF3025	0.85	-0.9
3,100,001	-		GFF3025	0.86	-0.9
3,100,013	-		GFF3025	0.87	-1.1
3,100,040	+		GFF3025	0.89	-0.9
3,100,044	+		GFF3025	0.89	-0.1
3,100,087	-				+1.0
3,100,087	-				-0.9
3,100,087	-				+0.7
3,100,087	-				+0.9
3,100,087	-				+1.4
3,100,087	-				+0.6
3,100,087	-				-0.2
3,100,087	-				+0.5
3,100,087	-				+0.7
3,100,096	+				-0.6
3,100,104	-				-1.0
3,100,104	-				-1.1
3,100,104	-				-0.7
3,100,104	-				-0.0
3,100,137	-				-0.5
3,100,139	-				-1.3
3,100,147	-				+1.0
3,100,151	-				-0.6
3,100,171	-				-0.8
3,100,171	-				+0.6
3,100,173	+				-1.7
3,100,185	+				-2.1
3,100,185	+				-0.9
3,100,188	-				+1.4
3,100,214	-				-0.1
3,100,251	-				+0.4
3,100,260	-				-2.0
3,100,326	+		GFF3026	0.12	-0.2
3,100,381	+		GFF3026	0.19	+0.0
3,100,435	+		GFF3026	0.26	-0.7
3,100,440	+		GFF3026	0.27	+0.2
3,100,440	+		GFF3026	0.27	+0.4
3,100,443	-		GFF3026	0.27	+1.0
3,100,443	-		GFF3026	0.27	+0.9
3,100,443	-		GFF3026	0.27	-0.5
3,100,443	-		GFF3026	0.27	+0.9
3,100,449	+		GFF3026	0.28	-0.3
3,100,449	+		GFF3026	0.28	+0.5
3,100,457	-		GFF3026	0.29	+0.3
3,100,457	-		GFF3026	0.29	-1.5
3,100,457	-		GFF3026	0.29	+0.6
3,100,476	-		GFF3026	0.32	-1.3
3,100,479	+		GFF3026	0.32	-0.5
3,100,487	+		GFF3026	0.33	-0.9
3,100,487	-		GFF3026	0.33	+0.6
3,100,487	-		GFF3026	0.33	-0.6
3,100,500	+		GFF3026	0.35	-0.0
3,100,505	+		GFF3026	0.35	-0.9
3,100,505	+		GFF3026	0.35	+0.4
3,100,505	+		GFF3026	0.35	-0.4
3,100,505	+		GFF3026	0.35	+1.4
3,100,513	-		GFF3026	0.37	-0.6
3,100,513	-		GFF3026	0.37	+0.3
3,100,513	-		GFF3026	0.37	+2.2
3,100,513	-		GFF3026	0.37	-0.5
3,100,513	-		GFF3026	0.37	-2.5
3,100,513	-		GFF3026	0.37	-0.3
3,100,513	-		GFF3026	0.37	+0.4
3,100,513	-		GFF3026	0.37	-0.8
3,100,513	-		GFF3026	0.37	-0.2
3,100,513	-		GFF3026	0.37	-0.6
3,100,518	-		GFF3026	0.37	-1.2
3,100,537	-		GFF3026	0.40	+0.7
3,100,580	+		GFF3026	0.46	-1.2
3,100,594	-		GFF3026	0.47	+0.8
3,100,659	+		GFF3026	0.56	+0.7
3,100,662	-		GFF3026	0.56	-0.5
3,100,678	+		GFF3026	0.59	+0.1
3,100,686	-		GFF3026	0.60	+1.0
3,100,686	-		GFF3026	0.60	+0.6
3,100,688	+		GFF3026	0.60	+1.7
3,100,688	+		GFF3026	0.60	+1.2
3,100,696	-		GFF3026	0.61	-0.1
3,100,727	+		GFF3026	0.65	-1.3
3,100,732	+		GFF3026	0.66	+0.7
3,100,732	+		GFF3026	0.66	+1.7
3,100,732	+		GFF3026	0.66	+1.1
3,100,732	+		GFF3026	0.66	+0.1
3,100,735	-		GFF3026	0.66	+1.8
3,100,740	-		GFF3026	0.67	+0.5
3,100,740	-		GFF3026	0.67	+0.1
3,100,740	-		GFF3026	0.67	+0.4
3,100,742	+		GFF3026	0.67	+0.2
3,100,742	+		GFF3026	0.67	+1.0
3,100,742	+		GFF3026	0.67	-1.0
3,100,742	+		GFF3026	0.67	-2.3
3,100,742	+		GFF3026	0.67	+0.5
3,100,750	-		GFF3026	0.68	-1.3
3,100,750	-		GFF3026	0.68	-0.4
3,100,750	-		GFF3026	0.68	-0.4
3,100,750	-		GFF3026	0.68	-0.3
3,100,773	+		GFF3026	0.71	+0.2
3,100,781	-		GFF3026	0.72	-0.2
3,100,787	-		GFF3026	0.73	+0.1
3,100,798	-		GFF3026	0.75	+1.5
3,100,798	-		GFF3026	0.75	+0.0
3,100,800	+		GFF3026	0.75	+0.9
3,100,803	+		GFF3026	0.75	+0.6
3,100,808	-		GFF3026	0.76	-0.1
3,100,808	-		GFF3026	0.76	-0.4
3,100,808	-		GFF3026	0.76	+1.1
3,100,808	-		GFF3026	0.76	-0.3
3,100,808	-		GFF3026	0.76	+0.4
3,100,816	+		GFF3026	0.77	+0.2
3,100,834	+		GFF3026	0.80	+1.4
3,100,834	+		GFF3026	0.80	+1.1
3,100,834	+		GFF3026	0.80	-3.0
3,100,840	-		GFF3026	0.80	-1.3
3,100,842	-		GFF3026	0.81	-0.6
3,100,842	-		GFF3026	0.81	+1.3
3,100,859	+		GFF3026	0.83	-1.0
3,100,859	+		GFF3026	0.83	-1.6
3,100,859	+		GFF3026	0.83	+0.1
3,100,859	+		GFF3026	0.83	+0.0
3,100,867	-		GFF3026	0.84	-1.2
3,100,867	-		GFF3026	0.84	-0.1
3,100,867	-		GFF3026	0.84	+0.2
3,100,874	+		GFF3026	0.85	+2.1
3,100,879	+		GFF3026	0.86	-1.3
3,100,879	+		GFF3026	0.86	-0.7
3,100,879	+		GFF3026	0.86	+0.8
3,100,884	+		GFF3026	0.86	+0.0
3,100,884	+		GFF3026	0.86	-0.1
3,100,887	-		GFF3026	0.87	-1.5
3,100,892	-		GFF3026	0.87	+0.7
3,100,892	-		GFF3026	0.87	-0.6
3,100,892	-		GFF3026	0.87	+0.4
3,100,892	-		GFF3026	0.87	+0.3
3,100,892	-		GFF3026	0.87	-0.1
3,100,892	-		GFF3026	0.87	+0.1
3,100,892	-		GFF3026	0.87	-0.9
3,100,925	+				+1.0
3,100,933	-				-1.4
3,100,933	-				-1.0
3,100,933	-				+0.1
3,100,952	-				-0.2
3,100,969	-				-0.2
3,101,012	-				-1.7
3,101,017	+				-0.8
3,101,017	-				-1.0
3,101,031	+				-0.3
3,101,031	+				+1.7
3,101,031	+				+1.2
3,101,031	+				-0.2
3,101,031	+				-0.7
3,101,031	+				-0.8
3,101,031	+				+1.4
3,101,031	+				-2.9
3,101,031	+				-0.0
3,101,031	+				+0.7
3,101,031	+				+0.7
3,101,036	+				+1.2
3,101,041	+				+0.5
3,101,062	+				-0.3
3,101,069	-				+1.1
3,101,085	-				+0.8
3,101,123	+				-1.3
3,101,157	-		GFF3027	0.11	-0.5
3,101,198	+		GFF3027	0.15	+0.7
3,101,198	-		GFF3027	0.15	+0.6
3,101,247	+		GFF3027	0.20	-0.5
3,101,255	-		GFF3027	0.21	+0.5
3,101,315	+		GFF3027	0.26	-0.8
3,101,328	+		GFF3027	0.28	-0.9
3,101,345	+		GFF3027	0.29	+2.1
3,101,374	-		GFF3027	0.32	-2.1
3,101,401	+		GFF3027	0.34	-1.5
3,101,407	+		GFF3027	0.35	-2.3
3,101,407	+		GFF3027	0.35	-1.8
3,101,409	-		GFF3027	0.35	-0.0
3,101,409	-		GFF3027	0.35	+1.4
3,101,409	-		GFF3027	0.35	+0.0
3,101,412	+		GFF3027	0.36	-0.6
3,101,412	+		GFF3027	0.36	-1.0
3,101,412	+		GFF3027	0.36	+0.5
3,101,412	+		GFF3027	0.36	-2.2
3,101,412	+		GFF3027	0.36	-1.2
3,101,415	-		GFF3027	0.36	-1.7
3,101,420	-		GFF3027	0.36	-1.5
3,101,420	-		GFF3027	0.36	+0.1
3,101,424	+		GFF3027	0.37	+0.5
3,101,432	-		GFF3027	0.37	-1.6
3,101,439	-		GFF3027	0.38	-0.6
3,101,458	+		GFF3027	0.40	-0.9
3,101,485	+		GFF3027	0.42	-0.0
3,101,491	-		GFF3027	0.43	+0.2
3,101,496	+		GFF3027	0.43	-1.6
3,101,506	-		GFF3027	0.44	-1.6
3,101,523	+		GFF3027	0.46	-0.8
3,101,555	+		GFF3027	0.49	+0.0
3,101,560	+		GFF3027	0.50	-1.5
3,101,568	-		GFF3027	0.50	-2.0
3,101,621	-		GFF3027	0.55	-3.0
3,101,649	-		GFF3027	0.58	-1.6
3,101,649	-		GFF3027	0.58	-0.8
3,101,650	+		GFF3027	0.58	-1.3
3,101,651	+		GFF3027	0.58	-1.0
3,101,651	+		GFF3027	0.58	-0.2
3,101,651	+		GFF3027	0.58	-0.0
3,101,659	-		GFF3027	0.59	-0.4
3,101,671	+		GFF3027	0.60	-0.1
3,101,715	-		GFF3027	0.64	-1.0
3,101,741	+		GFF3027	0.67	-0.8
3,101,741	+		GFF3027	0.67	-0.5
3,101,741	+		GFF3027	0.67	-0.5
3,101,741	+		GFF3027	0.67	-1.5
3,101,746	+		GFF3027	0.67	-0.0
3,101,746	+		GFF3027	0.67	-0.1
3,101,749	-		GFF3027	0.68	+0.2
3,101,749	-		GFF3027	0.68	-0.8
3,101,751	+		GFF3027	0.68	-0.4
3,101,751	+		GFF3027	0.68	-1.1
3,101,751	+		GFF3027	0.68	+0.3
3,101,751	+		GFF3027	0.68	-1.0
3,101,751	+		GFF3027	0.68	+1.1
3,101,759	-		GFF3027	0.68	-1.6
3,101,784	-		GFF3027	0.71	-0.5
3,101,800	+		GFF3027	0.72	-0.6
3,101,803	+		GFF3027	0.73	-0.2
3,101,808	-		GFF3027	0.73	-0.8
3,101,833	+		GFF3027	0.75	+1.8
3,101,833	+		GFF3027	0.75	-0.8
3,101,833	+		GFF3027	0.75	-1.0
3,101,833	+		GFF3027	0.75	-0.3
3,101,833	+		GFF3027	0.75	-0.6
3,101,833	+		GFF3027	0.75	-1.3
3,101,833	+		GFF3027	0.75	-1.0
3,101,838	+		GFF3027	0.76	-1.6
3,101,838	+		GFF3027	0.76	-1.3
3,101,840	+		GFF3027	0.76	+0.3
3,101,859	+		GFF3027	0.78	+1.1
3,101,868	+		GFF3027	0.79	-0.5
3,101,872	-		GFF3027	0.79	-1.4
3,101,921	+		GFF3027	0.84	-2.3
3,101,926	+		GFF3027	0.84	+0.3
3,101,926	+		GFF3027	0.84	-0.9
3,101,931	+		GFF3027	0.85	+0.4
3,101,934	-		GFF3027	0.85	-1.8
3,101,934	-		GFF3027	0.85	-1.4
3,101,934	-		GFF3027	0.85	-1.3
3,101,934	-		GFF3027	0.85	-3.2
3,101,939	-		GFF3027	0.86	-0.3
3,101,939	-		GFF3027	0.86	-0.1
3,101,939	-		GFF3027	0.86	-0.6
3,101,939	-		GFF3027	0.86	-1.5
3,101,939	-		GFF3027	0.86	-0.7
3,101,939	-		GFF3027	0.86	+0.3
3,101,945	-		GFF3027	0.86	+1.4
3,101,947	+		GFF3027	0.86	+0.1
3,101,952	+		GFF3027	0.87	-2.1
3,101,952	-		GFF3027	0.87	+1.3
3,101,962	-		GFF3027	0.88	-1.2
3,101,970	-		GFF3027	0.89	-0.0