Strain Fitness in Sphingobium sp. HT1-2 around GFF2773

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,804,120	-		GFF2771	0.37	-2.0
2,804,120	-		GFF2771	0.37	+0.3
2,804,120	-		GFF2771	0.37	+0.3
2,804,124	+		GFF2771	0.37	-0.0
2,804,230	-		GFF2771	0.55	-0.8
2,804,230	-		GFF2771	0.55	-1.6
2,804,230	-		GFF2771	0.55	-0.0
2,804,230	-		GFF2771	0.55	+0.5
2,804,278	+		GFF2771	0.63	-1.6
2,804,283	+		GFF2771	0.64	+0.3
2,804,291	-		GFF2771	0.65	-1.4
2,804,291	-		GFF2771	0.65	+0.5
2,804,291	-		GFF2771	0.65	-0.7
2,804,293	-		GFF2771	0.66	-0.8
2,804,298	-		GFF2771	0.66	-0.9
2,804,299	-		GFF2771	0.67	-0.5
2,804,299	-		GFF2771	0.67	-0.6
2,804,321	+		GFF2771	0.70	+0.7
2,804,326	+		GFF2771	0.71	-0.3
2,804,326	+		GFF2771	0.71	-0.3
2,804,329	-		GFF2771	0.71	+0.4
2,804,329	-		GFF2771	0.71	+0.2
2,804,334	-		GFF2771	0.72	-1.2
2,804,334	-		GFF2771	0.72	+0.5
2,804,334	-		GFF2771	0.72	+2.0
2,804,334	-		GFF2771	0.72	-0.9
2,804,334	-		GFF2771	0.72	+0.8
2,804,334	-		GFF2771	0.72	+1.8
2,804,334	-		GFF2771	0.72	+0.3
2,804,334	-		GFF2771	0.72	+0.0
2,804,342	+		GFF2771	0.74	-1.5
2,804,347	+		GFF2771	0.74	+0.5
2,804,347	+		GFF2771	0.74	+0.4
2,804,355	-		GFF2771	0.76	-1.2
2,804,355	-		GFF2771	0.76	-0.2
2,804,357	+		GFF2771	0.76	-0.3
2,804,357	+		GFF2771	0.76	+0.7
2,804,357	+		GFF2771	0.76	-1.2
2,804,362	+		GFF2771	0.77	+1.0
2,804,376	+		GFF2771	0.79	+2.0
2,804,384	-		GFF2771	0.81	+0.2
2,804,384	-		GFF2771	0.81	-0.3
2,804,394	-		GFF2771	0.82	-0.5
2,804,404	-		GFF2771	0.84	-1.0
2,804,423	+		GFF2771	0.87	+0.9
2,804,467	-				+1.0
2,804,467	-				-0.1
2,804,467	-				+0.6
2,804,467	-				-0.3
2,804,472	-				-0.5
2,804,472	-				-0.5
2,804,472	-				-1.4
2,804,613	+		GFF2772	0.16	-0.5
2,804,621	-		GFF2772	0.17	+0.6
2,804,643	-		GFF2772	0.21	-0.0
2,804,658	+		GFF2772	0.24	-1.0
2,804,708	-		GFF2772	0.33	+0.8
2,804,715	+		GFF2772	0.34	+3.0
2,804,719	-		GFF2772	0.35	-1.5
2,804,725	+		GFF2772	0.36	-1.2
2,804,725	+		GFF2772	0.36	-1.6
2,804,730	+		GFF2772	0.37	-0.3
2,804,730	+		GFF2772	0.37	-0.6
2,804,730	+		GFF2772	0.37	-0.3
2,804,730	+		GFF2772	0.37	-1.5
2,804,732	+		GFF2772	0.38	-1.6
2,804,733	-		GFF2772	0.38	-0.8
2,804,733	-		GFF2772	0.38	-0.9
2,804,733	-		GFF2772	0.38	+0.7
2,804,733	-		GFF2772	0.38	-1.5
2,804,738	-		GFF2772	0.39	+0.7
2,804,738	-		GFF2772	0.39	-1.0
2,804,772	+		GFF2772	0.45	-1.3
2,804,785	+		GFF2772	0.47	-1.2
2,804,785	+		GFF2772	0.47	-0.6
2,804,793	-		GFF2772	0.49	-1.4
2,804,809	+		GFF2772	0.52	-1.2
2,804,835	+		GFF2772	0.56	-0.1
2,804,854	+		GFF2772	0.60	-0.8
2,804,862	-		GFF2772	0.61	+0.4
2,804,870	+		GFF2772	0.63	+1.1
2,804,886	+		GFF2772	0.66	-0.8
2,804,894	-		GFF2772	0.67	-0.4
2,804,965	+		GFF2772	0.80	+0.6
2,804,970	+		GFF2772	0.81	-2.8
2,804,978	-		GFF2772	0.83	-2.4
2,804,995	+		GFF2772	0.86	+0.2
2,805,003	-		GFF2772	0.87	-0.1
2,805,023	+				+2.0
2,805,031	-				+1.0
2,805,049	+				-1.5
2,805,057	-				-0.6
2,805,105	-				-0.2
2,805,174	-		GFF2773	0.17	-0.2
2,805,241	+		GFF2773	0.30	+0.0
2,805,247	-		GFF2773	0.32	+1.8
2,805,249	-		GFF2773	0.32	-0.3
2,805,249	-		GFF2773	0.32	-1.0
2,805,249	-		GFF2773	0.32	-1.7
2,805,249	-		GFF2773	0.32	-0.3
2,805,249	-		GFF2773	0.32	+1.8
2,805,249	-		GFF2773	0.32	-2.3
2,805,249	-		GFF2773	0.32	+0.6
2,805,249	-		GFF2773	0.32	-1.8
2,805,249	-		GFF2773	0.32	-1.5
2,805,249	-		GFF2773	0.32	-1.4
2,805,249	-		GFF2773	0.32	+1.9
2,805,249	-		GFF2773	0.32	+0.1
2,805,254	-		GFF2773	0.33	-0.6
2,805,254	-		GFF2773	0.33	-1.8
2,805,254	-		GFF2773	0.33	-1.6
2,805,300	+		GFF2773	0.42	+0.0
2,805,300	+		GFF2773	0.42	-1.1
2,805,300	+		GFF2773	0.42	-0.8
2,805,310	+		GFF2773	0.44	+0.4
2,805,310	+		GFF2773	0.44	-0.1
2,805,310	+		GFF2773	0.44	+0.0
2,805,310	+		GFF2773	0.44	-0.7
2,805,310	+		GFF2773	0.44	+0.9
2,805,310	+		GFF2773	0.44	-0.0
2,805,310	+		GFF2773	0.44	+0.8
2,805,310	+		GFF2773	0.44	-0.4
2,805,310	+		GFF2773	0.44	-0.6
2,805,310	+		GFF2773	0.44	+0.2
2,805,318	-		GFF2773	0.45	+0.5
2,805,318	-		GFF2773	0.45	-0.9
2,805,318	-		GFF2773	0.45	+0.1
2,805,318	-		GFF2773	0.45	+0.8
2,805,318	-		GFF2773	0.45	+0.5
2,805,323	-		GFF2773	0.46	-0.7
2,805,339	+		GFF2773	0.50	-0.2
2,805,339	+		GFF2773	0.50	-1.1
2,805,339	+		GFF2773	0.50	-0.7
2,805,339	+		GFF2773	0.50	-1.1
2,805,346	+		GFF2773	0.51	-0.7
2,805,354	-		GFF2773	0.52	-0.7
2,805,438	-		GFF2773	0.69	+0.3
2,805,453	-		GFF2773	0.72	-1.3
2,805,524	-		GFF2773	0.86	+0.6
2,805,592	+				+0.2
2,805,612	+				+0.5
2,805,612	+				-0.7
2,805,617	+				-2.2
2,805,637	+				-0.3
2,805,708	+				+1.3
2,805,723	+				-1.9
2,805,743	+				-0.8
2,805,743	+				-0.8
2,805,745	+				+0.2
2,805,749	+				+1.1
2,805,749	+				+0.0
2,805,749	+				-0.6
2,805,757	-				-0.6
2,805,773	+				-0.3
2,805,773	+				+0.3
2,805,773	+				-0.6
2,805,780	+				+0.4
2,805,819	+				-0.5
2,805,827	-				-1.4
2,805,993	+				+0.5
2,806,008	+				+1.5
2,806,012	+				+0.3
2,806,029	-				+0.2
2,806,031	+				+1.1
2,806,041	+				-1.2
2,806,081	+				+0.2
2,806,081	+				-2.6
2,806,081	+				-0.3
2,806,157	+		GFF2774	0.10	-0.5
2,806,198	+		GFF2774	0.12	-0.9
2,806,220	+		GFF2774	0.13	-0.7
2,806,220	+		GFF2774	0.13	-0.9
2,806,230	+		GFF2774	0.14	+1.0
2,806,242	+		GFF2774	0.14	+0.8
2,806,242	+		GFF2774	0.14	-0.0
2,806,244	-		GFF2774	0.14	-0.4
2,806,250	-		GFF2774	0.14	+0.1
2,806,250	-		GFF2774	0.14	+0.2
2,806,252	+		GFF2774	0.14	-0.7
2,806,263	+		GFF2774	0.15	-1.8
2,806,268	+		GFF2774	0.15	-0.1
2,806,314	+		GFF2774	0.17	-1.2
2,806,321	+		GFF2774	0.17	-1.6
2,806,338	-		GFF2774	0.18	-0.6
2,806,349	+		GFF2774	0.19	-0.0
2,806,354	+		GFF2774	0.19	-0.5
2,806,354	+		GFF2774	0.19	+0.3
2,806,354	+		GFF2774	0.19	-0.7
2,806,367	+		GFF2774	0.19	+0.8
2,806,375	-		GFF2774	0.20	+0.5
2,806,375	-		GFF2774	0.20	+1.0
2,806,375	-		GFF2774	0.20	+0.5
2,806,389	+		GFF2774	0.20	-1.3
2,806,390	-		GFF2774	0.20	+1.0
2,806,394	+		GFF2774	0.21	-0.7
2,806,394	+		GFF2774	0.21	-0.2
2,806,394	+		GFF2774	0.21	-0.7
2,806,395	-		GFF2774	0.21	-0.8
2,806,396	-		GFF2774	0.21	-0.5
2,806,402	-		GFF2774	0.21	+0.9
2,806,402	-		GFF2774	0.21	-1.0
2,806,402	-		GFF2774	0.21	+0.2
2,806,402	-		GFF2774	0.21	-0.0
2,806,402	-		GFF2774	0.21	+0.5
2,806,425	+		GFF2774	0.22	-0.3
2,806,425	+		GFF2774	0.22	+0.7
2,806,425	+		GFF2774	0.22	+0.1
2,806,425	+		GFF2774	0.22	+0.4
2,806,428	-		GFF2774	0.22	-0.9
2,806,433	-		GFF2774	0.22	+0.6
2,806,433	-		GFF2774	0.22	-0.3
2,806,433	-		GFF2774	0.22	+2.1
2,806,433	-		GFF2774	0.22	+0.3
2,806,433	-		GFF2774	0.22	+0.5
2,806,433	-		GFF2774	0.22	-0.0
2,806,433	-		GFF2774	0.22	+1.8
2,806,433	-		GFF2774	0.22	-1.3
2,806,433	-		GFF2774	0.22	+0.7
2,806,433	-		GFF2774	0.22	-0.5
2,806,438	+		GFF2774	0.22	+0.5
2,806,446	-		GFF2774	0.23	+1.7
2,806,451	+		GFF2774	0.23	-0.2
2,806,563	+		GFF2774	0.28	-1.9
2,806,578	+		GFF2774	0.28	+1.2