Strain Fitness in Sphingobium sp. HT1-2 around GFF246

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF245 and GFF246 are separated by 24 nucleotidesGFF246 and GFF247 are separated by 31 nucleotidesGFF247 and GFF248 overlap by 16 nucleotides GFF245 - Cardiolipin synthase, bacterial type ClsA, at 250,257 to 251,672 GFF245 GFF246 - Quinolinate synthetase (EC 2.5.1.72), at 251,697 to 252,683 GFF246 GFF247 - hypothetical protein, at 252,715 to 253,428 GFF247 GFF248 - MBL-fold metallo-hydrolase superfamily, at 253,413 to 254,300 GFF248 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 250.711 kb on - strand, within GFF245at 250.714 kb on - strand, within GFF245at 250.721 kb on - strand, within GFF245at 250.722 kb on - strand, within GFF245at 250.747 kb on + strand, within GFF245at 250.747 kb on + strand, within GFF245at 250.755 kb on - strand, within GFF245at 250.755 kb on - strand, within GFF245at 250.755 kb on - strand, within GFF245at 250.755 kb on - strand, within GFF245at 250.769 kb on + strand, within GFF245at 250.769 kb on + strand, within GFF245at 250.769 kb on + strand, within GFF245at 250.812 kb on - strand, within GFF245at 250.822 kb on - strand, within GFF245at 250.856 kb on + strand, within GFF245at 250.856 kb on - strand, within GFF245at 250.898 kb on + strand, within GFF245at 250.906 kb on - strand, within GFF245at 251.010 kb on - strand, within GFF245at 251.010 kb on - strand, within GFF245at 251.047 kb on - strand, within GFF245at 251.069 kb on + strand, within GFF245at 251.069 kb on - strand, within GFF245at 251.082 kb on - strand, within GFF245at 251.108 kb on - strand, within GFF245at 251.117 kb on + strand, within GFF245at 251.122 kb on + strand, within GFF245at 251.143 kb on + strand, within GFF245at 251.149 kb on + strand, within GFF245at 251.149 kb on + strand, within GFF245at 251.152 kb on - strand, within GFF245at 251.157 kb on - strand, within GFF245at 251.162 kb on + strand, within GFF245at 251.162 kb on + strand, within GFF245at 251.162 kb on + strand, within GFF245at 251.192 kb on + strand, within GFF245at 251.200 kb on + strand, within GFF245at 251.232 kb on + strand, within GFF245at 251.232 kb on + strand, within GFF245at 251.232 kb on + strand, within GFF245at 251.256 kb on + strand, within GFF245at 251.264 kb on - strand, within GFF245at 251.264 kb on - strand, within GFF245at 251.264 kb on - strand, within GFF245at 251.264 kb on - strand, within GFF245at 251.266 kb on + strand, within GFF245at 251.266 kb on + strand, within GFF245at 251.266 kb on + strand, within GFF245at 251.266 kb on + strand, within GFF245at 251.266 kb on + strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.274 kb on - strand, within GFF245at 251.321 kb on - strand, within GFF245at 251.357 kb on + strand, within GFF245at 251.365 kb on - strand, within GFF245at 251.365 kb on - strand, within GFF245at 251.365 kb on - strand, within GFF245at 251.420 kb on - strand, within GFF245at 251.421 kb on + strand, within GFF245at 251.511 kb on - strand, within GFF245at 251.559 kb on - strandat 251.662 kb on + strandat 251.663 kb on + strandat 251.664 kb on + strandat 251.688 kb on + strandat 251.689 kb on + strandat 251.710 kb on + strandat 251.754 kb on + strandat 251.763 kb on + strandat 251.807 kb on + strand, within GFF246at 251.815 kb on - strand, within GFF246at 251.815 kb on - strand, within GFF246at 251.830 kb on - strand, within GFF246at 251.862 kb on + strand, within GFF246at 252.018 kb on + strand, within GFF246at 252.108 kb on - strand, within GFF246at 252.152 kb on + strand, within GFF246at 252.152 kb on + strand, within GFF246at 252.155 kb on - strand, within GFF246at 252.162 kb on + strand, within GFF246at 252.189 kb on - strand, within GFF246at 252.209 kb on - strand, within GFF246at 252.231 kb on + strand, within GFF246at 252.239 kb on - strand, within GFF246at 252.261 kb on - strand, within GFF246at 252.289 kb on + strand, within GFF246at 252.309 kb on - strand, within GFF246at 252.309 kb on - strand, within GFF246at 252.325 kb on + strand, within GFF246at 252.325 kb on + strand, within GFF246at 252.325 kb on + strand, within GFF246at 252.333 kb on - strand, within GFF246at 252.333 kb on - strand, within GFF246at 252.333 kb on - strand, within GFF246at 252.367 kb on + strand, within GFF246at 252.367 kb on + strand, within GFF246at 252.367 kb on + strand, within GFF246at 252.367 kb on + strand, within GFF246at 252.367 kb on + strand, within GFF246at 252.375 kb on - strand, within GFF246at 252.375 kb on - strand, within GFF246at 252.375 kb on - strand, within GFF246at 252.375 kb on - strand, within GFF246at 252.375 kb on - strand, within GFF246at 252.375 kb on - strand, within GFF246at 252.375 kb on - strand, within GFF246at 252.403 kb on - strand, within GFF246at 252.426 kb on - strand, within GFF246at 252.541 kb on - strand, within GFF246at 252.592 kb on - strandat 252.647 kb on + strandat 252.677 kb on + strandat 252.685 kb on + strandat 252.685 kb on + strandat 252.685 kb on - strandat 252.693 kb on - strandat 252.721 kb on + strandat 252.726 kb on + strandat 252.734 kb on - strandat 252.749 kb on - strandat 252.768 kb on - strandat 252.768 kb on - strandat 252.768 kb on - strandat 252.779 kb on + strandat 252.821 kb on - strand, within GFF247at 252.823 kb on + strand, within GFF247at 252.831 kb on - strand, within GFF247at 252.831 kb on - strand, within GFF247at 252.841 kb on - strand, within GFF247at 252.857 kb on + strand, within GFF247at 252.859 kb on - strand, within GFF247at 252.859 kb on - strand, within GFF247at 252.929 kb on + strand, within GFF247at 252.941 kb on + strand, within GFF247at 252.948 kb on - strand, within GFF247at 252.964 kb on + strand, within GFF247at 252.966 kb on + strand, within GFF247at 253.004 kb on + strand, within GFF247at 253.008 kb on + strand, within GFF247at 253.012 kb on - strand, within GFF247at 253.012 kb on - strand, within GFF247at 253.014 kb on - strand, within GFF247at 253.018 kb on + strand, within GFF247at 253.037 kb on - strand, within GFF247at 253.042 kb on - strand, within GFF247at 253.050 kb on + strand, within GFF247at 253.058 kb on - strand, within GFF247at 253.075 kb on - strand, within GFF247at 253.077 kb on + strand, within GFF247at 253.077 kb on + strand, within GFF247at 253.077 kb on - strand, within GFF247at 253.079 kb on + strand, within GFF247at 253.085 kb on - strand, within GFF247at 253.089 kb on + strand, within GFF247at 253.089 kb on + strand, within GFF247at 253.094 kb on + strand, within GFF247at 253.170 kb on + strand, within GFF247at 253.178 kb on - strand, within GFF247at 253.185 kb on + strand, within GFF247at 253.193 kb on - strand, within GFF247at 253.200 kb on - strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.213 kb on + strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.221 kb on - strand, within GFF247at 253.223 kb on + strand, within GFF247at 253.223 kb on + strand, within GFF247at 253.231 kb on - strand, within GFF247at 253.231 kb on - strand, within GFF247at 253.241 kb on - strand, within GFF247at 253.241 kb on - strand, within GFF247at 253.242 kb on + strand, within GFF247at 253.242 kb on + strand, within GFF247at 253.250 kb on - strand, within GFF247at 253.250 kb on - strand, within GFF247at 253.250 kb on - strand, within GFF247at 253.250 kb on - strand, within GFF247at 253.280 kb on + strand, within GFF247at 253.293 kb on - strand, within GFF247at 253.295 kb on + strand, within GFF247at 253.295 kb on + strand, within GFF247at 253.298 kb on - strand, within GFF247at 253.305 kb on + strand, within GFF247at 253.317 kb on + strand, within GFF247at 253.325 kb on - strand, within GFF247at 253.351 kb on - strand, within GFF247at 253.396 kb on - strandat 253.406 kb on - strandat 253.406 kb on - strandat 253.443 kb on - strandat 253.443 kb on - strandat 253.443 kb on - strandat 253.458 kb on - strandat 253.458 kb on - strandat 253.458 kb on - strandat 253.487 kb on + strandat 253.504 kb on + strand, within GFF248at 253.505 kb on + strand, within GFF248at 253.528 kb on + strand, within GFF248at 253.529 kb on - strand, within GFF248at 253.529 kb on - strand, within GFF248at 253.530 kb on + strand, within GFF248at 253.536 kb on - strand, within GFF248at 253.601 kb on - strand, within GFF248at 253.618 kb on - strand, within GFF248at 253.683 kb on - strand, within GFF248at 253.683 kb on - strand, within GFF248

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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250,711 - GFF245 0.32 -0.9
250,714 - GFF245 0.32 -0.5
250,721 - GFF245 0.33 -0.8
250,722 - GFF245 0.33 -0.5
250,747 + GFF245 0.35 -1.1
250,747 + GFF245 0.35 -0.5
250,755 - GFF245 0.35 +0.2
250,755 - GFF245 0.35 +0.6
250,755 - GFF245 0.35 -0.4
250,755 - GFF245 0.35 +0.1
250,769 + GFF245 0.36 -1.7
250,769 + GFF245 0.36 +1.8
250,769 + GFF245 0.36 +0.3
250,812 - GFF245 0.39 +2.2
250,822 - GFF245 0.40 -0.1
250,856 + GFF245 0.42 -0.3
250,856 - GFF245 0.42 +0.9
250,898 + GFF245 0.45 -0.1
250,906 - GFF245 0.46 +0.8
251,010 - GFF245 0.53 -0.2
251,010 - GFF245 0.53 -0.2
251,047 - GFF245 0.56 -0.7
251,069 + GFF245 0.57 -0.1
251,069 - GFF245 0.57 -0.9
251,082 - GFF245 0.58 -0.4
251,108 - GFF245 0.60 +0.4
251,117 + GFF245 0.61 -1.1
251,122 + GFF245 0.61 +0.8
251,143 + GFF245 0.63 -0.1
251,149 + GFF245 0.63 -0.3
251,149 + GFF245 0.63 +0.8
251,152 - GFF245 0.63 +0.1
251,157 - GFF245 0.64 -0.4
251,162 + GFF245 0.64 +0.3
251,162 + GFF245 0.64 +0.4
251,162 + GFF245 0.64 -0.6
251,192 + GFF245 0.66 +0.3
251,200 + GFF245 0.67 +1.4
251,232 + GFF245 0.69 +0.4
251,232 + GFF245 0.69 -0.5
251,232 + GFF245 0.69 -0.3
251,256 + GFF245 0.71 +0.4
251,264 - GFF245 0.71 -0.2
251,264 - GFF245 0.71 +0.5
251,264 - GFF245 0.71 +0.1
251,264 - GFF245 0.71 +0.9
251,266 + GFF245 0.71 +0.6
251,266 + GFF245 0.71 +0.8
251,266 + GFF245 0.71 -2.1
251,266 + GFF245 0.71 +0.2
251,266 + GFF245 0.71 +0.3
251,274 - GFF245 0.72 +0.7
251,274 - GFF245 0.72 +1.9
251,274 - GFF245 0.72 +0.2
251,274 - GFF245 0.72 +0.5
251,274 - GFF245 0.72 -1.1
251,274 - GFF245 0.72 -0.5
251,274 - GFF245 0.72 +0.9
251,274 - GFF245 0.72 -1.0
251,274 - GFF245 0.72 -1.3
251,274 - GFF245 0.72 +1.6
251,321 - GFF245 0.75 -0.3
251,357 + GFF245 0.78 +0.4
251,365 - GFF245 0.78 -0.6
251,365 - GFF245 0.78 +0.3
251,365 - GFF245 0.78 -0.7
251,420 - GFF245 0.82 -0.2
251,421 + GFF245 0.82 +0.4
251,511 - GFF245 0.89 -0.8
251,559 - -0.5
251,662 + -0.6
251,663 + -0.2
251,664 + +0.3
251,688 + -1.6
251,689 + +0.1
251,710 + -0.1
251,754 + +0.1
251,763 + -2.9
251,807 + GFF246 0.11 -0.1
251,815 - GFF246 0.12 +0.5
251,815 - GFF246 0.12 -0.5
251,830 - GFF246 0.13 -1.4
251,862 + GFF246 0.17 -2.1
252,018 + GFF246 0.33 -1.3
252,108 - GFF246 0.42 -2.1
252,152 + GFF246 0.46 -1.4
252,152 + GFF246 0.46 +0.2
252,155 - GFF246 0.46 -0.8
252,162 + GFF246 0.47 -0.5
252,189 - GFF246 0.50 -2.6
252,209 - GFF246 0.52 -1.8
252,231 + GFF246 0.54 -1.5
252,239 - GFF246 0.55 -1.1
252,261 - GFF246 0.57 +0.4
252,289 + GFF246 0.60 -0.8
252,309 - GFF246 0.62 -0.6
252,309 - GFF246 0.62 +0.9
252,325 + GFF246 0.64 -1.9
252,325 + GFF246 0.64 -0.9
252,325 + GFF246 0.64 -0.5
252,333 - GFF246 0.64 -0.6
252,333 - GFF246 0.64 -0.7
252,333 - GFF246 0.64 -2.2
252,367 + GFF246 0.68 -2.1
252,367 + GFF246 0.68 -0.6
252,367 + GFF246 0.68 -0.2
252,367 + GFF246 0.68 +0.1
252,367 + GFF246 0.68 +1.5
252,375 - GFF246 0.69 -0.6
252,375 - GFF246 0.69 -1.7
252,375 - GFF246 0.69 -2.2
252,375 - GFF246 0.69 -0.3
252,375 - GFF246 0.69 -1.9
252,375 - GFF246 0.69 -1.6
252,375 - GFF246 0.69 -1.9
252,403 - GFF246 0.72 -2.1
252,426 - GFF246 0.74 -0.1
252,541 - GFF246 0.86 +0.6
252,592 - -2.8
252,647 + -2.1
252,677 + -1.3
252,685 + +0.2
252,685 + -1.6
252,685 - -0.7
252,693 - +1.3
252,721 + -0.4
252,726 + +0.7
252,734 - +0.1
252,749 - -0.1
252,768 - -2.1
252,768 - -0.1
252,768 - +0.9
252,779 + -0.3
252,821 - GFF247 0.15 -0.9
252,823 + GFF247 0.15 +0.5
252,831 - GFF247 0.16 -0.2
252,831 - GFF247 0.16 +1.1
252,841 - GFF247 0.18 +0.9
252,857 + GFF247 0.20 -0.6
252,859 - GFF247 0.20 -1.9
252,859 - GFF247 0.20 -1.2
252,929 + GFF247 0.30 +0.6
252,941 + GFF247 0.32 -0.3
252,948 - GFF247 0.33 -0.8
252,964 + GFF247 0.35 +0.7
252,966 + GFF247 0.35 +0.5
253,004 + GFF247 0.40 +0.8
253,008 + GFF247 0.41 +2.0
253,012 - GFF247 0.42 +0.9
253,012 - GFF247 0.42 +0.5
253,014 - GFF247 0.42 -0.4
253,018 + GFF247 0.42 -0.8
253,037 - GFF247 0.45 -0.3
253,042 - GFF247 0.46 -0.1
253,050 + GFF247 0.47 +0.8
253,058 - GFF247 0.48 -0.9
253,075 - GFF247 0.50 -0.1
253,077 + GFF247 0.51 +0.4
253,077 + GFF247 0.51 +0.1
253,077 - GFF247 0.51 +0.2
253,079 + GFF247 0.51 +0.4
253,085 - GFF247 0.52 +0.9
253,089 + GFF247 0.52 -0.2
253,089 + GFF247 0.52 -1.6
253,094 + GFF247 0.53 -1.3
253,170 + GFF247 0.64 +0.4
253,178 - GFF247 0.65 +0.1
253,185 + GFF247 0.66 -0.6
253,193 - GFF247 0.67 -0.3
253,200 - GFF247 0.68 -0.1
253,213 + GFF247 0.70 -0.6
253,213 + GFF247 0.70 +0.5
253,213 + GFF247 0.70 +0.9
253,213 + GFF247 0.70 +0.1
253,213 + GFF247 0.70 +0.4
253,213 + GFF247 0.70 -0.3
253,213 + GFF247 0.70 +0.5
253,213 + GFF247 0.70 -0.2
253,213 + GFF247 0.70 -0.5
253,213 + GFF247 0.70 +0.9
253,213 + GFF247 0.70 +1.1
253,213 + GFF247 0.70 +0.5
253,221 - GFF247 0.71 +0.9
253,221 - GFF247 0.71 -0.2
253,221 - GFF247 0.71 +0.8
253,221 - GFF247 0.71 -0.3
253,221 - GFF247 0.71 -0.0
253,221 - GFF247 0.71 -0.1
253,221 - GFF247 0.71 +0.4
253,221 - GFF247 0.71 +1.8
253,221 - GFF247 0.71 +0.5
253,221 - GFF247 0.71 +1.5
253,221 - GFF247 0.71 -0.1
253,221 - GFF247 0.71 +0.7
253,221 - GFF247 0.71 +0.8
253,221 - GFF247 0.71 -0.5
253,221 - GFF247 0.71 -0.7
253,221 - GFF247 0.71 -0.1
253,221 - GFF247 0.71 -0.1
253,221 - GFF247 0.71 -0.6
253,221 - GFF247 0.71 +0.7
253,221 - GFF247 0.71 +1.0
253,221 - GFF247 0.71 -0.3
253,223 + GFF247 0.71 -2.2
253,223 + GFF247 0.71 -0.6
253,231 - GFF247 0.72 -1.1
253,231 - GFF247 0.72 +1.2
253,241 - GFF247 0.74 +1.4
253,241 - GFF247 0.74 +0.2
253,242 + GFF247 0.74 -1.7
253,242 + GFF247 0.74 -0.8
253,250 - GFF247 0.75 +0.7
253,250 - GFF247 0.75 +0.6
253,250 - GFF247 0.75 +1.2
253,250 - GFF247 0.75 -1.0
253,280 + GFF247 0.79 -1.1
253,293 - GFF247 0.81 -2.0
253,295 + GFF247 0.81 -0.8
253,295 + GFF247 0.81 -2.0
253,298 - GFF247 0.82 +0.2
253,305 + GFF247 0.83 +0.2
253,317 + GFF247 0.84 -0.5
253,325 - GFF247 0.85 +1.3
253,351 - GFF247 0.89 -1.3
253,396 - +0.3
253,406 - +0.7
253,406 - -1.0
253,443 - -1.4
253,443 - -0.2
253,443 - +0.0
253,458 - +0.6
253,458 - +0.2
253,458 - -0.5
253,487 + -1.6
253,504 + GFF248 0.10 -0.6
253,505 + GFF248 0.10 +0.2
253,528 + GFF248 0.13 +0.7
253,529 - GFF248 0.13 +0.5
253,529 - GFF248 0.13 +0.6
253,530 + GFF248 0.13 -1.4
253,536 - GFF248 0.14 -2.5
253,601 - GFF248 0.21 +0.2
253,618 - GFF248 0.23 +0.8
253,683 - GFF248 0.30 -0.3
253,683 - GFF248 0.30 +1.3

Or see this region's nucleotide sequence