Strain Fitness in Sphingobium sp. HT1-2 around GFF2378

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,399,788	+				-2.1
2,399,788	+				-1.1
2,399,796	-				+0.6
2,399,796	-				-1.1
2,399,875	+				-0.2
2,399,875	+				-1.0
2,399,875	+				-0.2
2,399,883	-				+0.7
2,399,885	+				-1.0
2,399,885	+				-1.1
2,399,885	+				+0.1
2,399,885	+				-0.5
2,399,908	+				+0.6
2,399,927	+				+1.3
2,399,927	+				-0.1
2,399,927	+				-1.0
2,399,927	+				-0.1
2,399,935	-				+0.5
2,399,937	+				-1.6
2,399,946	-				-3.3
2,399,946	-				+0.3
2,399,982	+		GFF2377	0.12	-2.5
2,399,982	+		GFF2377	0.12	+0.0
2,399,982	+		GFF2377	0.12	+0.5
2,399,990	-		GFF2377	0.13	-2.3
2,399,990	-		GFF2377	0.13	+0.2
2,399,999	+		GFF2377	0.14	-1.6
2,400,003	+		GFF2377	0.14	-0.1
2,400,025	-		GFF2377	0.17	-0.5
2,400,025	-		GFF2377	0.17	-2.0
2,400,033	+		GFF2377	0.18	+0.4
2,400,055	+		GFF2377	0.20	-0.9
2,400,055	+		GFF2377	0.20	-0.4
2,400,056	+		GFF2377	0.20	-0.1
2,400,057	-		GFF2377	0.20	+0.9
2,400,078	-		GFF2377	0.23	+0.3
2,400,121	-		GFF2377	0.28	+1.1
2,400,128	+		GFF2377	0.29	-0.1
2,400,154	+		GFF2377	0.32	+0.1
2,400,156	-		GFF2377	0.32	-2.3
2,400,162	-		GFF2377	0.33	+0.9
2,400,162	-		GFF2377	0.33	-1.7
2,400,163	-		GFF2377	0.33	-0.7
2,400,198	+		GFF2377	0.37	+0.8
2,400,219	+		GFF2377	0.40	-0.2
2,400,224	+		GFF2377	0.40	+0.8
2,400,237	+		GFF2377	0.42	-0.7
2,400,247	+		GFF2377	0.43	-1.9
2,400,247	+		GFF2377	0.43	-0.5
2,400,247	+		GFF2377	0.43	-1.5
2,400,255	-		GFF2377	0.44	-0.5
2,400,268	+		GFF2377	0.45	-0.0
2,400,278	+		GFF2377	0.47	-0.1
2,400,286	+		GFF2377	0.48	+0.8
2,400,286	-		GFF2377	0.48	+0.2
2,400,332	-		GFF2377	0.53	-2.4
2,400,381	+		GFF2377	0.59	-0.4
2,400,381	+		GFF2377	0.59	+0.7
2,400,389	-		GFF2377	0.60	-0.3
2,400,399	+		GFF2377	0.61	-0.8
2,400,412	-		GFF2377	0.62	-1.3
2,400,435	+		GFF2377	0.65	-1.9
2,400,435	+		GFF2377	0.65	+0.1
2,400,435	+		GFF2377	0.65	-0.5
2,400,443	-		GFF2377	0.66	-1.2
2,400,443	-		GFF2377	0.66	-0.4
2,400,443	-		GFF2377	0.66	+1.0
2,400,443	-		GFF2377	0.66	-1.5
2,400,444	+		GFF2377	0.66	+0.5
2,400,452	-		GFF2377	0.67	+0.1
2,400,453	-		GFF2377	0.67	-1.4
2,400,453	-		GFF2377	0.67	-0.9
2,400,490	-		GFF2377	0.72	-0.4
2,400,495	-		GFF2377	0.72	-2.1
2,400,498	-		GFF2377	0.73	-1.8
2,400,502	+		GFF2377	0.73	-0.7
2,400,502	+		GFF2377	0.73	+0.1
2,400,508	+		GFF2377	0.74	-0.2
2,400,508	+		GFF2377	0.74	-1.1
2,400,508	+		GFF2377	0.74	-2.3
2,400,508	+		GFF2377	0.74	-1.1
2,400,510	-		GFF2377	0.74	-1.9
2,400,518	-		GFF2377	0.75	+0.5
2,400,531	+		GFF2377	0.76	+0.8
2,400,531	+		GFF2377	0.76	+0.3
2,400,531	+		GFF2377	0.76	-1.9
2,400,531	+		GFF2377	0.76	+0.4
2,400,539	-		GFF2377	0.77	+1.1
2,400,539	-		GFF2377	0.77	-0.5
2,400,539	-		GFF2377	0.77	+0.3
2,400,550	-		GFF2377	0.79	+0.3
2,400,552	+		GFF2377	0.79	+1.0
2,400,554	+		GFF2377	0.79	-1.7
2,400,556	+		GFF2377	0.79	-0.3
2,400,571	+		GFF2377	0.81	-1.6
2,400,571	+		GFF2377	0.81	+0.7
2,400,571	+		GFF2377	0.81	-2.0
2,400,571	+		GFF2377	0.81	+0.1
2,400,571	+		GFF2377	0.81	-0.0
2,400,571	+		GFF2377	0.81	+1.4
2,400,571	+		GFF2377	0.81	+0.4
2,400,579	-		GFF2377	0.82	-0.0
2,400,579	-		GFF2377	0.82	+0.8
2,400,579	-		GFF2377	0.82	-2.4
2,400,579	-		GFF2377	0.82	+0.8
2,400,579	-		GFF2377	0.82	-0.1
2,400,579	-		GFF2377	0.82	-0.5
2,400,621	+		GFF2377	0.87	+0.4
2,400,621	-		GFF2377	0.87	-0.1
2,400,629	-		GFF2377	0.88	+0.7
2,400,637	+		GFF2377	0.89	+0.1
2,400,718	-				-0.7
2,400,760	-				-0.1
2,400,760	-				-2.3
2,400,768	+				-0.4
2,400,776	-				-1.4
2,400,781	+				-1.1
2,400,781	+				-0.4
2,400,781	+				-0.6
2,400,781	+				+0.6
2,400,781	+				+0.6
2,400,786	+				-1.3
2,400,786	+				-2.1
2,400,786	+				+0.8
2,400,786	+				+0.8
2,400,789	-				-0.0
2,400,789	-				-1.0
2,400,789	-				-0.9
2,400,789	-				-2.2
2,400,789	-				-0.3
2,400,789	-				+0.3
2,400,792	+				+1.2
2,400,794	-				-1.6
2,400,799	-				-1.3
2,400,799	-				-0.7
2,400,832	+		GFF2378	0.14	-0.1
2,400,832	+		GFF2378	0.14	+0.2
2,400,832	+		GFF2378	0.14	-0.4
2,400,832	+		GFF2378	0.14	+0.4
2,400,832	+		GFF2378	0.14	+0.1
2,400,832	+		GFF2378	0.14	-1.9
2,400,840	-		GFF2378	0.15	+0.3
2,400,840	-		GFF2378	0.15	+0.3
2,400,840	-		GFF2378	0.15	+0.3
2,400,840	-		GFF2378	0.15	-0.9
2,400,852	+		GFF2378	0.18	+0.2
2,400,853	+		GFF2378	0.18	-0.3
2,400,882	-		GFF2378	0.24	+0.5
2,400,901	+		GFF2378	0.28	-0.2
2,400,904	-		GFF2378	0.28	-0.7
2,400,906	+		GFF2378	0.29	+0.4
2,400,967	+		GFF2378	0.41	+2.1
2,400,967	+		GFF2378	0.41	+0.4
2,400,997	+		GFF2378	0.48	-0.2
2,401,005	-		GFF2378	0.49	-0.0
2,401,048	+		GFF2378	0.58	-1.5
2,401,053	+		GFF2378	0.59	-0.6
2,401,058	+		GFF2378	0.60	-0.6
2,401,058	+		GFF2378	0.60	+0.1
2,401,066	-		GFF2378	0.62	-0.1
2,401,080	+		GFF2378	0.65	-1.1
2,401,085	-		GFF2378	0.66	-1.5
2,401,094	+		GFF2378	0.67	+0.4
2,401,119	-		GFF2378	0.73	+0.7
2,401,138	+		GFF2378	0.77	+0.7
2,401,140	+		GFF2378	0.77	-0.7
2,401,140	+		GFF2378	0.77	+0.4
2,401,140	+		GFF2378	0.77	-1.0
2,401,141	-		GFF2378	0.77	-0.9
2,401,146	-		GFF2378	0.78	+1.1
2,401,148	-		GFF2378	0.79	-2.5
2,401,166	-		GFF2378	0.82	-1.6
2,401,182	-		GFF2378	0.86	-0.5
2,401,186	+		GFF2378	0.86	-0.9
2,401,207	+				-0.2
2,401,212	+				+0.5
2,401,219	+				+1.2
2,401,227	-				-0.7
2,401,245	+				-1.6
2,401,258	+				-1.2
2,401,268	-				-0.2
2,401,279	+				-0.9
2,401,281	-				-2.3
2,401,289	+				-0.3
2,401,289	+				+0.8
2,401,289	+				-0.0
2,401,289	+				-0.5
2,401,289	-				+1.0
2,401,291	-				+0.2
2,401,296	-				-0.7
2,401,297	-				+1.4
2,401,297	-				+0.5
2,401,297	-				+0.1
2,401,297	-				-0.2
2,401,299	+				-0.3
2,401,299	+				-0.7
2,401,304	+				+1.6
2,401,307	-				+0.4
2,401,317	-				+0.5
2,401,317	-				+1.2
2,401,335	+				-2.4
2,401,355	+				+1.2
2,401,361	-				+0.6
2,401,361	-				+0.3
2,401,361	-				-0.1
2,401,361	-				+0.2
2,401,380	+				-1.5
2,401,398	+				+0.1
2,401,398	+				+0.6
2,401,398	-				+1.2
2,401,421	+		GFF2379	0.11	-0.7
2,401,421	+		GFF2379	0.11	-0.3
2,401,436	-		GFF2379	0.12	-0.3
2,401,444	+		GFF2379	0.12	+0.8
2,401,455	+		GFF2379	0.13	-0.2
2,401,463	-		GFF2379	0.13	-0.1
2,401,463	-		GFF2379	0.13	-0.9
2,401,498	-		GFF2379	0.16	-0.5
2,401,538	+		GFF2379	0.18	-0.8
2,401,539	+		GFF2379	0.18	+0.1
2,401,546	-		GFF2379	0.19	+0.8
2,401,573	+		GFF2379	0.20	-1.3
2,401,581	-		GFF2379	0.21	-0.8
2,401,585	-		GFF2379	0.21	-0.8
2,401,586	-		GFF2379	0.21	+0.1
2,401,629	-		GFF2379	0.24	+0.3
2,401,641	+		GFF2379	0.25	-1.4
2,401,642	+		GFF2379	0.25	+0.0
2,401,675	+		GFF2379	0.27	-0.9
2,401,675	+		GFF2379	0.27	-1.0
2,401,683	-		GFF2379	0.27	-0.6
2,401,683	-		GFF2379	0.27	-1.1
2,401,697	+		GFF2379	0.28	+0.5
2,401,705	-		GFF2379	0.29	-0.3
2,401,717	+		GFF2379	0.29	-1.3
2,401,727	+		GFF2379	0.30	+0.8
2,401,735	+		GFF2379	0.30	-0.5
2,401,741	+		GFF2379	0.31	+0.6
2,401,761	+		GFF2379	0.32	-2.3
2,401,761	+		GFF2379	0.32	+0.5
2,401,763	+		GFF2379	0.32	-0.2
2,401,763	+		GFF2379	0.32	+0.1
2,401,764	-		GFF2379	0.32	+0.5
2,401,764	-		GFF2379	0.32	-1.4
2,401,764	-		GFF2379	0.32	-1.6
2,401,769	-		GFF2379	0.33	-0.8
2,401,769	-		GFF2379	0.33	-1.3
2,401,774	+		GFF2379	0.33	-1.2
2,401,774	-		GFF2379	0.33	+0.1
2,401,803	-		GFF2379	0.35	+0.6
2,401,811	-		GFF2379	0.35	-0.1
2,401,815	+		GFF2379	0.35	-0.6
2,401,815	+		GFF2379	0.35	+0.8
2,401,815	+		GFF2379	0.35	-1.2
2,401,836	+		GFF2379	0.37	-0.1
2,401,847	-		GFF2379	0.37	-0.3
2,401,848	+		GFF2379	0.38	+0.5
2,401,852	+		GFF2379	0.38	-0.2
2,401,852	-		GFF2379	0.38	+0.6
2,401,859	+		GFF2379	0.38	-1.1
2,401,860	+		GFF2379	0.38	+0.7
2,401,860	+		GFF2379	0.38	-0.2
2,401,860	+		GFF2379	0.38	+0.1
2,401,868	-		GFF2379	0.39	-0.4
2,401,868	-		GFF2379	0.39	+0.5
2,401,868	-		GFF2379	0.39	-0.5
2,401,868	-		GFF2379	0.39	+0.1
2,401,903	+		GFF2379	0.41	-0.6
2,401,903	+		GFF2379	0.41	+0.2
2,401,906	-		GFF2379	0.41	+0.1
2,401,911	-		GFF2379	0.42	-0.7
2,401,913	+		GFF2379	0.42	-0.4
2,401,913	+		GFF2379	0.42	-1.2
2,401,913	+		GFF2379	0.42	-1.0
2,401,913	+		GFF2379	0.42	-0.9
2,401,913	+		GFF2379	0.42	+0.8
2,401,913	+		GFF2379	0.42	-0.4
2,401,915	+		GFF2379	0.42	-1.6
2,401,918	-		GFF2379	0.42	+0.0
2,401,919	-		GFF2379	0.42	-0.8
2,401,921	-		GFF2379	0.42	+0.2
2,401,921	-		GFF2379	0.42	-0.8
2,401,921	-		GFF2379	0.42	+1.3
2,401,921	-		GFF2379	0.42	+0.4
2,401,921	-		GFF2379	0.42	+0.3
2,401,933	+		GFF2379	0.43	+0.8
2,401,933	+		GFF2379	0.43	-0.5
2,401,941	-		GFF2379	0.43	-0.5
2,401,956	+		GFF2379	0.44	-0.2
2,401,958	+		GFF2379	0.44	+0.2
2,401,972	+		GFF2379	0.45	+0.2
2,401,982	+		GFF2379	0.46	-1.2
2,401,994	+		GFF2379	0.47	-3.1
2,402,009	+		GFF2379	0.48	-2.8
2,402,009	+		GFF2379	0.48	-0.2
2,402,014	+		GFF2379	0.48	+0.3
2,402,017	-		GFF2379	0.48	-1.4
2,402,017	-		GFF2379	0.48	-0.0
2,402,018	-		GFF2379	0.48	+0.3
2,402,019	+		GFF2379	0.48	-0.2
2,402,027	-		GFF2379	0.49	+0.9
2,402,027	-		GFF2379	0.49	+0.3
2,402,032	-		GFF2379	0.49	-0.0
2,402,091	-		GFF2379	0.53	-0.1
2,402,099	-		GFF2379	0.53	-1.6
2,402,156	-		GFF2379	0.57	+0.5
2,402,156	-		GFF2379	0.57	-1.9
2,402,157	-		GFF2379	0.57	+0.6
2,402,167	-		GFF2379	0.58	+0.4
2,402,167	-		GFF2379	0.58	-0.5
2,402,167	-		GFF2379	0.58	+0.1
2,402,170	+		GFF2379	0.58	+0.1
2,402,178	-		GFF2379	0.58	+0.8
2,402,196	-		GFF2379	0.59	-1.3
2,402,198	+		GFF2379	0.60	-1.5
2,402,200	+		GFF2379	0.60	-0.3
2,402,208	-		GFF2379	0.60	-1.9
2,402,215	+		GFF2379	0.61	-1.6
2,402,215	+		GFF2379	0.61	-0.3
2,402,215	+		GFF2379	0.61	-1.2
2,402,218	-		GFF2379	0.61	-1.9
2,402,223	-		GFF2379	0.61	+1.0
2,402,229	+		GFF2379	0.62	+0.8