Strain Fitness in Sphingobium sp. HT1-2 around GFF2365

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,385,852	+				+0.2
2,385,859	+				-1.3
2,385,864	-				-1.9
2,385,867	+				-0.1
2,385,869	-				-1.3
2,385,881	+				+1.0
2,385,884	-				-0.9
2,385,890	-				+1.4
2,385,929	+		GFF2364	0.12	+0.8
2,385,932	-		GFF2364	0.13	+0.6
2,385,937	-		GFF2364	0.13	+0.1
2,385,937	-		GFF2364	0.13	+1.0
2,385,966	-		GFF2364	0.17	+0.7
2,385,966	-		GFF2364	0.17	-0.0
2,385,966	-		GFF2364	0.17	+0.4
2,385,966	-		GFF2364	0.17	+0.7
2,385,966	-		GFF2364	0.17	-0.9
2,385,971	-		GFF2364	0.18	+0.2
2,385,999	+		GFF2364	0.21	+0.1
2,386,007	-		GFF2364	0.22	-0.1
2,386,008	+		GFF2364	0.22	-0.5
2,386,009	+		GFF2364	0.22	+0.3
2,386,016	-		GFF2364	0.23	+0.8
2,386,016	-		GFF2364	0.23	-1.7
2,386,017	-		GFF2364	0.23	-0.3
2,386,019	+		GFF2364	0.23	+0.4
2,386,022	+		GFF2364	0.24	-1.9
2,386,027	+		GFF2364	0.24	+0.7
2,386,029	-		GFF2364	0.25	+0.6
2,386,030	-		GFF2364	0.25	+0.3
2,386,034	-		GFF2364	0.25	-0.8
2,386,035	-		GFF2364	0.25	-1.1
2,386,043	+		GFF2364	0.26	-0.7
2,386,048	+		GFF2364	0.27	-2.1
2,386,049	-		GFF2364	0.27	+0.0
2,386,053	+		GFF2364	0.27	-0.0
2,386,053	+		GFF2364	0.27	-0.8
2,386,056	-		GFF2364	0.28	-1.2
2,386,056	-		GFF2364	0.28	+0.9
2,386,061	-		GFF2364	0.28	-0.8
2,386,071	-		GFF2364	0.30	-0.3
2,386,081	+		GFF2364	0.31	-1.9
2,386,081	+		GFF2364	0.31	-0.3
2,386,084	-		GFF2364	0.31	+0.7
2,386,103	+		GFF2364	0.33	-0.1
2,386,110	-		GFF2364	0.34	+0.1
2,386,151	+		GFF2364	0.39	-0.8
2,386,180	+		GFF2364	0.43	-0.8
2,386,181	+		GFF2364	0.43	-0.0
2,386,181	+		GFF2364	0.43	-0.1
2,386,181	+		GFF2364	0.43	-0.9
2,386,181	+		GFF2364	0.43	+0.5
2,386,188	-		GFF2364	0.44	+0.6
2,386,189	-		GFF2364	0.44	-0.8
2,386,206	+		GFF2364	0.46	+0.9
2,386,206	-		GFF2364	0.46	-2.1
2,386,239	-		GFF2364	0.50	-0.0
2,386,261	+		GFF2364	0.53	-0.1
2,386,266	+		GFF2364	0.53	+0.1
2,386,266	+		GFF2364	0.53	+1.2
2,386,266	+		GFF2364	0.53	+0.8
2,386,274	-		GFF2364	0.54	-1.2
2,386,274	-		GFF2364	0.54	+0.7
2,386,321	+		GFF2364	0.60	+1.7
2,386,321	+		GFF2364	0.60	-0.2
2,386,321	+		GFF2364	0.60	-2.2
2,386,324	-		GFF2364	0.60	+0.5
2,386,329	-		GFF2364	0.61	-0.1
2,386,329	-		GFF2364	0.61	-0.9
2,386,340	-		GFF2364	0.62	-0.8
2,386,352	+		GFF2364	0.64	-2.2
2,386,352	+		GFF2364	0.64	-0.0
2,386,352	+		GFF2364	0.64	-1.4
2,386,352	+		GFF2364	0.64	-1.3
2,386,352	+		GFF2364	0.64	-0.1
2,386,352	+		GFF2364	0.64	+1.0
2,386,360	-		GFF2364	0.64	-1.1
2,386,360	-		GFF2364	0.64	-0.0
2,386,360	-		GFF2364	0.64	-1.2
2,386,360	-		GFF2364	0.64	+0.6
2,386,360	-		GFF2364	0.64	-2.3
2,386,360	-		GFF2364	0.64	-1.9
2,386,360	-		GFF2364	0.64	-0.8
2,386,360	-		GFF2364	0.64	+0.6
2,386,360	-		GFF2364	0.64	-0.1
2,386,360	-		GFF2364	0.64	+0.5
2,386,365	-		GFF2364	0.65	-0.8
2,386,365	-		GFF2364	0.65	-0.0
2,386,365	-		GFF2364	0.65	+0.3
2,386,365	-		GFF2364	0.65	-0.6
2,386,365	-		GFF2364	0.65	-1.9
2,386,370	-		GFF2364	0.66	-0.9
2,386,370	-		GFF2364	0.66	+0.1
2,386,370	-		GFF2364	0.66	-2.1
2,386,379	+		GFF2364	0.67	-1.2
2,386,380	-		GFF2364	0.67	+0.2
2,386,385	-		GFF2364	0.68	+1.0
2,386,385	-		GFF2364	0.68	+1.1
2,386,385	-		GFF2364	0.68	+1.6
2,386,387	-		GFF2364	0.68	+0.7
2,386,387	-		GFF2364	0.68	-1.6
2,386,393	-		GFF2364	0.68	+0.1
2,386,405	-		GFF2364	0.70	+0.4
2,386,413	+		GFF2364	0.71	+0.4
2,386,415	+		GFF2364	0.71	-0.2
2,386,415	+		GFF2364	0.71	-1.0
2,386,415	+		GFF2364	0.71	-0.1
2,386,421	-		GFF2364	0.72	-0.8
2,386,421	-		GFF2364	0.72	-1.5
2,386,421	-		GFF2364	0.72	-0.9
2,386,421	-		GFF2364	0.72	+0.7
2,386,421	-		GFF2364	0.72	+0.4
2,386,423	-		GFF2364	0.72	+0.5
2,386,488	+		GFF2364	0.80	+0.2
2,386,496	-		GFF2364	0.81	-1.7
2,386,496	-		GFF2364	0.81	-1.1
2,386,519	+		GFF2364	0.84	-1.3
2,386,519	-		GFF2364	0.84	+0.2
2,386,529	+		GFF2364	0.85	+0.1
2,386,542	+		GFF2364	0.86	+0.9
2,386,542	-		GFF2364	0.86	+0.2
2,386,581	+				-0.4
2,386,584	-				-1.4
2,386,584	-				-1.0
2,386,602	+				+1.9
2,386,604	-				+0.5
2,386,609	+				-1.6
2,386,617	-				-1.2
2,386,623	+				-0.5
2,386,631	-				-0.6
2,386,635	+				-0.4
2,386,635	+				+1.1
2,386,646	+				+0.3
2,386,657	-				+1.0
2,386,657	-				-0.2
2,386,664	+				+0.1
2,386,680	-				-0.9
2,386,696	-				+1.2
2,386,752	+				+0.7
2,386,752	+				+1.3
2,386,752	+				-1.5
2,386,752	+				-1.0
2,386,760	-				-1.2
2,386,760	-				+0.1
2,386,760	-				-1.5
2,386,760	-				-1.8
2,386,760	-				+0.9
2,386,760	-				+0.9
2,386,768	-				-1.4
2,386,777	-				-2.5
2,386,779	+				-0.3
2,386,799	+				-0.4
2,386,799	+				-1.4
2,386,806	+				-0.0
2,386,807	-				-1.4
2,386,814	-				-1.3
2,386,817	+				-0.1
2,386,817	+				-0.1
2,386,817	-				-0.1
2,386,825	-				-1.1
2,386,836	+				-1.5
2,386,836	+				-0.4
2,386,836	+				-2.1
2,386,836	+				+0.6
2,386,836	+				+0.2
2,386,836	+				-0.1
2,386,836	+				-0.5
2,386,844	-				-0.7
2,386,844	-				+0.2
2,386,846	+				-0.0
2,386,846	+				-0.2
2,386,846	+				-1.4
2,386,854	+				+0.8
2,386,877	+				+0.6
2,386,882	-				+0.5
2,386,906	-				-0.3
2,386,946	+		GFF2365	0.11	+0.3
2,386,954	-		GFF2365	0.11	-1.4
2,386,970	+		GFF2365	0.13	-1.9
2,386,975	+		GFF2365	0.13	+1.9
2,386,983	-		GFF2365	0.14	-0.1
2,386,985	+		GFF2365	0.14	+1.0
2,386,990	+		GFF2365	0.14	-1.3
2,386,998	-		GFF2365	0.15	-1.3
2,387,012	+		GFF2365	0.16	+0.4
2,387,032	-		GFF2365	0.18	-1.8
2,387,037	-		GFF2365	0.19	+0.1
2,387,051	+		GFF2365	0.20	+1.3
2,387,053	+		GFF2365	0.20	-1.2
2,387,075	+		GFF2365	0.22	-1.2
2,387,079	-		GFF2365	0.22	+1.1
2,387,092	+		GFF2365	0.24	-1.1
2,387,095	-		GFF2365	0.24	-1.1
2,387,099	+		GFF2365	0.24	-2.3
2,387,115	-		GFF2365	0.26	-2.6
2,387,147	-		GFF2365	0.29	+0.7
2,387,149	+		GFF2365	0.29	+0.5
2,387,169	+		GFF2365	0.31	+1.0
2,387,174	+		GFF2365	0.31	-0.1
2,387,206	+		GFF2365	0.34	-0.9
2,387,225	+		GFF2365	0.36	-0.1
2,387,232	+		GFF2365	0.36	+1.3
2,387,233	-		GFF2365	0.36	+0.4
2,387,235	+		GFF2365	0.36	-0.2
2,387,237	+		GFF2365	0.37	-1.3
2,387,237	+		GFF2365	0.37	+1.5
2,387,240	-		GFF2365	0.37	+0.2
2,387,240	-		GFF2365	0.37	+0.1
2,387,240	-		GFF2365	0.37	-1.5
2,387,242	+		GFF2365	0.37	-0.4
2,387,242	+		GFF2365	0.37	-1.3
2,387,245	-		GFF2365	0.37	-1.0
2,387,245	-		GFF2365	0.37	+0.6
2,387,245	-		GFF2365	0.37	-0.6
2,387,245	-		GFF2365	0.37	+1.1
2,387,250	-		GFF2365	0.38	-0.5
2,387,250	-		GFF2365	0.38	-0.0
2,387,254	+		GFF2365	0.38	-0.7
2,387,278	+		GFF2365	0.40	+1.0
2,387,336	+		GFF2365	0.46	-1.2
2,387,340	-		GFF2365	0.46	+1.4
2,387,357	+		GFF2365	0.47	-0.3
2,387,357	+		GFF2365	0.47	-0.4
2,387,357	+		GFF2365	0.47	+1.1
2,387,357	+		GFF2365	0.47	+0.3
2,387,357	+		GFF2365	0.47	-0.0
2,387,357	+		GFF2365	0.47	+1.4
2,387,372	+		GFF2365	0.49	-0.8
2,387,379	+		GFF2365	0.49	-0.0
2,387,384	+		GFF2365	0.50	+0.2
2,387,385	-		GFF2365	0.50	-2.0
2,387,387	-		GFF2365	0.50	-0.2
2,387,387	-		GFF2365	0.50	-0.9
2,387,387	-		GFF2365	0.50	+0.6
2,387,387	-		GFF2365	0.50	-0.6
2,387,410	+		GFF2365	0.52	-0.0
2,387,417	-		GFF2365	0.53	-1.6
2,387,417	-		GFF2365	0.53	-0.7
2,387,490	+		GFF2365	0.59	-0.7
2,387,493	+		GFF2365	0.60	-0.2
2,387,508	-		GFF2365	0.61	-0.4
2,387,582	-		GFF2365	0.68	-1.2
2,387,613	+		GFF2365	0.70	+0.2
2,387,613	+		GFF2365	0.70	-0.0
2,387,616	+		GFF2365	0.71	-1.4
2,387,621	-		GFF2365	0.71	+0.8
2,387,626	+		GFF2365	0.72	-2.1
2,387,626	-		GFF2365	0.72	+2.6
2,387,645	-		GFF2365	0.73	-0.3
2,387,645	-		GFF2365	0.73	-2.0
2,387,645	-		GFF2365	0.73	+0.2
2,387,656	-		GFF2365	0.74	-0.2
2,387,656	-		GFF2365	0.74	+0.7
2,387,681	-		GFF2365	0.77	+0.4
2,387,681	-		GFF2365	0.77	+0.1
2,387,684	+		GFF2365	0.77	-1.9
2,387,684	+		GFF2365	0.77	-0.1
2,387,684	+		GFF2365	0.77	+0.5
2,387,684	+		GFF2365	0.77	-0.5
2,387,692	-		GFF2365	0.78	+1.5
2,387,697	-		GFF2365	0.78	-0.2
2,387,730	+		GFF2365	0.81	+0.4
2,387,738	-		GFF2365	0.82	+0.8
2,387,758	+		GFF2365	0.83	-1.1
2,387,758	+		GFF2365	0.83	-1.1
2,387,784	+		GFF2365	0.86	+1.3
2,387,813	+		GFF2365	0.88	-1.6
2,387,826	-		GFF2365	0.90	-1.5
2,387,827	+		GFF2365	0.90	-1.1
2,387,827	+		GFF2365	0.90	+0.9
2,387,828	+		GFF2365	0.90	-0.6
2,387,832	+				-0.4
2,387,835	-				+0.1
2,387,840	-				-0.0
2,387,855	-				+0.1
2,387,860	-				-1.4
2,387,860	-				+0.2
2,387,862	-				-0.1
2,387,866	+				-1.3
2,387,866	+				-1.4
2,387,866	+				-0.6
2,387,866	+				-0.5
2,387,874	-				-1.4
2,387,874	-				+0.2
2,387,874	-				-2.1
2,387,874	-				-0.3
2,387,893	-				+0.4
2,388,041	-				-0.4
2,388,046	+				+0.6