Strain Fitness in Sphingobium sp. HT1-2 around GFF2341

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,364,425	+		GFF2340	0.43	+0.5
2,364,471	-		GFF2340	0.46	-0.0
2,364,482	-		GFF2340	0.47	-0.5
2,364,502	-		GFF2340	0.48	+0.2
2,364,540	-		GFF2340	0.50	+0.3
2,364,566	-		GFF2340	0.52	-0.7
2,364,566	-		GFF2340	0.52	+0.4
2,364,566	-		GFF2340	0.52	-0.9
2,364,571	-		GFF2340	0.52	+0.3
2,364,571	-		GFF2340	0.52	-0.1
2,364,582	+		GFF2340	0.53	-0.9
2,364,582	+		GFF2340	0.53	+1.0
2,364,585	-		GFF2340	0.53	-1.5
2,364,595	-		GFF2340	0.53	-0.3
2,364,643	+		GFF2340	0.56	-1.3
2,364,651	-		GFF2340	0.57	-0.4
2,364,651	-		GFF2340	0.57	+0.2
2,364,655	+		GFF2340	0.57	-0.6
2,364,691	+		GFF2340	0.59	-1.1
2,364,691	+		GFF2340	0.59	-0.5
2,364,691	+		GFF2340	0.59	-0.4
2,364,711	+		GFF2340	0.60	+1.2
2,364,721	-		GFF2340	0.61	+0.4
2,364,721	-		GFF2340	0.61	-1.1
2,364,721	-		GFF2340	0.61	-0.0
2,364,721	-		GFF2340	0.61	+0.7
2,364,721	-		GFF2340	0.61	-0.4
2,364,721	-		GFF2340	0.61	+0.2
2,364,733	+		GFF2340	0.62	+1.1
2,364,779	-		GFF2340	0.64	-1.3
2,364,788	-		GFF2340	0.65	+0.4
2,364,796	+		GFF2340	0.65	+1.2
2,364,801	+		GFF2340	0.66	-2.6
2,364,822	+		GFF2340	0.67	+1.1
2,364,822	+		GFF2340	0.67	-1.4
2,364,827	+		GFF2340	0.67	-1.9
2,364,830	-		GFF2340	0.68	-0.0
2,364,830	-		GFF2340	0.68	-1.3
2,364,830	-		GFF2340	0.68	-0.6
2,364,830	-		GFF2340	0.68	-1.7
2,364,835	-		GFF2340	0.68	-1.6
2,364,842	-		GFF2340	0.68	+0.3
2,364,877	-		GFF2340	0.70	-1.5
2,364,879	+		GFF2340	0.70	+0.9
2,364,887	-		GFF2340	0.71	+0.8
2,364,896	-		GFF2340	0.71	-0.5
2,364,909	-		GFF2340	0.72	+0.4
2,364,913	+		GFF2340	0.72	-1.0
2,364,913	+		GFF2340	0.72	-0.2
2,364,913	+		GFF2340	0.72	-0.4
2,364,914	+		GFF2340	0.73	+1.0
2,364,921	+		GFF2340	0.73	-1.5
2,364,921	+		GFF2340	0.73	-0.1
2,364,921	+		GFF2340	0.73	+1.0
2,364,921	-		GFF2340	0.73	+0.6
2,364,921	-		GFF2340	0.73	-1.0
2,364,921	-		GFF2340	0.73	-0.1
2,364,923	+		GFF2340	0.73	+0.2
2,364,926	+		GFF2340	0.73	-0.3
2,364,929	-		GFF2340	0.73	+0.1
2,364,931	-		GFF2340	0.74	+0.5
2,364,940	+		GFF2340	0.74	+0.4
2,364,956	-		GFF2340	0.75	-0.3
2,364,956	-		GFF2340	0.75	-0.9
2,365,004	-		GFF2340	0.78	-0.6
2,365,014	-		GFF2340	0.79	-2.2
2,365,026	+		GFF2340	0.79	-2.1
2,365,031	+		GFF2340	0.80	-0.5
2,365,031	+		GFF2340	0.80	+0.5
2,365,068	+		GFF2340	0.82	-0.1
2,365,070	-		GFF2340	0.82	-1.6
2,365,116	+		GFF2340	0.85	-0.5
2,365,133	+		GFF2340	0.86	-1.1
2,365,136	-		GFF2340	0.86	-1.0
2,365,146	-		GFF2340	0.86	-0.3
2,365,177	+		GFF2340	0.88	+0.7
2,365,188	+		GFF2340	0.89	-0.4
2,365,190	-		GFF2340	0.89	+0.4
2,365,195	-		GFF2340	0.89	-1.9
2,365,205	-		GFF2340	0.90	-1.9
2,365,205	-		GFF2340	0.90	+0.6
2,365,208	+				+0.1
2,365,211	-				-1.4
2,365,211	-				-0.4
2,365,215	-				-0.6
2,365,220	-				-2.6
2,365,264	-				-2.5
2,365,337	+				-0.6
2,365,342	-				-2.1
2,365,344	+				-0.5
2,365,344	+				-0.5
2,365,347	-				-1.6
2,365,347	-				-0.4
2,365,364	+				-0.7
2,365,378	-				-0.4
2,365,416	+				-1.7
2,365,423	+				-0.1
2,365,428	+				+0.1
2,365,431	-				+0.5
2,365,434	-				+1.4
2,365,436	-				+1.0
2,365,436	-				-0.5
2,366,220	+				-0.9
2,366,220	+				-0.2
2,366,220	+				+0.2
2,366,223	-				-2.1
2,366,228	-				+0.1
2,366,228	-				+0.2
2,366,228	-				-0.1
2,366,228	-				-0.3
2,366,228	-				-0.1
2,366,256	+				+0.3
2,366,268	+				-0.3
2,366,268	+				+0.1
2,366,268	+				-1.1
2,366,268	+				-1.1
2,366,268	+				-0.8
2,366,268	+				+0.5
2,366,268	+				-0.2
2,366,268	+				+1.3
2,366,268	+				+0.9
2,366,276	-				+0.1
2,366,276	-				+0.3
2,366,276	-				-2.6
2,366,276	-				-1.1
2,366,276	-				-0.2
2,366,276	-				-1.1
2,366,276	-				-1.3
2,366,278	-				-0.6
2,366,301	+				+0.5
2,366,301	+				-0.1
2,366,301	+				+0.0
2,366,301	+				+0.1
2,366,306	+				-0.1
2,366,311	+				-0.4
2,366,314	-				+0.7
2,366,319	-				-1.3
2,366,319	-				+0.5
2,366,321	+				+1.5
2,366,386	+		GFF2342	0.10	-0.1
2,366,391	+		GFF2342	0.11	+0.9
2,366,391	+		GFF2342	0.11	+0.1
2,366,394	-		GFF2342	0.11	-0.4
2,366,394	-		GFF2342	0.11	-1.6
2,366,399	-		GFF2342	0.12	+0.1
2,366,399	-		GFF2342	0.12	-0.7
2,366,399	-		GFF2342	0.12	-0.7
2,366,399	-		GFF2342	0.12	-1.9
2,366,419	+		GFF2342	0.14	-1.1
2,366,460	+		GFF2342	0.18	-0.1
2,366,479	-		GFF2342	0.19	+0.8
2,366,484	+		GFF2342	0.20	-1.5
2,366,484	+		GFF2342	0.20	-1.2
2,366,503	-		GFF2342	0.22	+0.5
2,366,531	-		GFF2342	0.25	-0.0
2,366,531	-		GFF2342	0.25	+0.3
2,366,555	+		GFF2342	0.27	-1.2
2,366,583	+		GFF2342	0.30	-0.9
2,366,591	-		GFF2342	0.30	-0.1
2,366,619	+		GFF2342	0.33	-0.3
2,366,626	+		GFF2342	0.34	+1.0
2,366,663	+		GFF2342	0.37	-1.5
2,366,668	+		GFF2342	0.38	-0.1
2,366,668	+		GFF2342	0.38	-0.2
2,366,668	+		GFF2342	0.38	-0.3
2,366,668	+		GFF2342	0.38	-2.3
2,366,668	+		GFF2342	0.38	+1.1
2,366,668	+		GFF2342	0.38	-0.4
2,366,676	-		GFF2342	0.39	+0.9
2,366,676	-		GFF2342	0.39	-0.4
2,366,676	-		GFF2342	0.39	-0.8
2,366,676	-		GFF2342	0.39	+0.3
2,366,676	-		GFF2342	0.39	-0.1
2,366,676	-		GFF2342	0.39	-0.4
2,366,691	+		GFF2342	0.40	+0.5
2,366,691	+		GFF2342	0.40	-1.4
2,366,691	+		GFF2342	0.40	-0.3
2,366,691	+		GFF2342	0.40	-2.2
2,366,691	+		GFF2342	0.40	-1.4
2,366,698	+		GFF2342	0.41	-0.1
2,366,699	-		GFF2342	0.41	+0.4
2,366,701	-		GFF2342	0.41	-2.6
2,366,711	+		GFF2342	0.42	-1.1
2,366,711	+		GFF2342	0.42	+0.2
2,366,711	+		GFF2342	0.42	-0.7
2,366,711	-		GFF2342	0.42	+0.2
2,366,719	-		GFF2342	0.43	-0.3
2,366,719	-		GFF2342	0.43	+0.7
2,366,719	-		GFF2342	0.43	-0.6
2,366,721	+		GFF2342	0.43	-1.3
2,366,762	+		GFF2342	0.47	-1.2
2,366,790	-		GFF2342	0.50	-0.7
2,366,808	+		GFF2342	0.52	-0.6
2,366,813	+		GFF2342	0.52	-0.8
2,366,816	-		GFF2342	0.52	-0.2
2,366,816	-		GFF2342	0.52	-2.1
2,366,835	+		GFF2342	0.54	-0.0
2,366,835	+		GFF2342	0.54	+1.2
2,366,857	+		GFF2342	0.56	-0.3
2,366,857	+		GFF2342	0.56	+0.1
2,366,857	+		GFF2342	0.56	-0.6
2,366,857	+		GFF2342	0.56	+0.6
2,366,857	+		GFF2342	0.56	-1.5
2,366,857	+		GFF2342	0.56	-2.5
2,366,857	+		GFF2342	0.56	+1.3
2,366,859	+		GFF2342	0.57	+0.0
2,366,865	-		GFF2342	0.57	+0.4
2,366,865	-		GFF2342	0.57	-0.7
2,366,865	-		GFF2342	0.57	-0.1
2,366,865	-		GFF2342	0.57	-0.1
2,366,865	-		GFF2342	0.57	-2.5
2,366,865	-		GFF2342	0.57	-0.9
2,366,865	-		GFF2342	0.57	-0.5
2,366,867	-		GFF2342	0.57	+0.4
2,366,898	+		GFF2342	0.60	-1.5
2,366,898	+		GFF2342	0.60	-0.5
2,366,906	-		GFF2342	0.61	-0.6
2,366,954	-		GFF2342	0.66	+0.4
2,366,975	+		GFF2342	0.68	+0.6
2,366,976	-		GFF2342	0.68	+0.8
2,366,987	+		GFF2342	0.69	-1.2
2,366,995	+		GFF2342	0.70	+0.6
2,366,995	+		GFF2342	0.70	+0.0
2,367,003	-		GFF2342	0.71	-0.1
2,367,020	-		GFF2342	0.72	+0.3
2,367,027	-		GFF2342	0.73	-0.8
2,367,030	+		GFF2342	0.73	-0.2
2,367,030	+		GFF2342	0.73	+0.5
2,367,030	+		GFF2342	0.73	-1.2
2,367,030	+		GFF2342	0.73	-1.1
2,367,037	+		GFF2342	0.74	+0.2
2,367,038	-		GFF2342	0.74	-1.1
2,367,038	-		GFF2342	0.74	+0.8
2,367,045	+		GFF2342	0.75	-1.4
2,367,049	-		GFF2342	0.75	+0.3
2,367,050	+		GFF2342	0.75	-0.7
2,367,053	-		GFF2342	0.76	-0.5
2,367,056	+		GFF2342	0.76	+0.7
2,367,056	+		GFF2342	0.76	-0.8
2,367,064	-		GFF2342	0.77	-1.1
2,367,069	-		GFF2342	0.77	-2.6
2,367,114	+		GFF2342	0.82	-0.0
2,367,122	-		GFF2342	0.82	-0.1
2,367,146	-		GFF2342	0.85	+0.8
2,367,162	-		GFF2342	0.86	-0.0
2,367,218	+				+0.6
2,367,223	+				-0.7
2,367,223	+				-0.9