Strain Fitness in Sphingobium sp. HT1-2 around GFF234

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF233 and GFF234 are separated by 55 nucleotidesGFF234 and GFF235 are separated by 34 nucleotidesGFF235 and GFF236 are separated by 372 nucleotides GFF233 - 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11, at 237,110 to 239,215 GFF233 GFF234 - hypothetical protein, at 239,271 to 239,558 GFF234 GFF235 - Phage protein (ACLAME 827), at 239,593 to 239,883 GFF235 GFF236 - LSU ribosomal protein L10p (P0), at 240,256 to 240,771 GFF236 Position (kb) 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 238.295 kb on + strand, within GFF233at 238.308 kb on + strand, within GFF233at 238.330 kb on - strand, within GFF233at 238.350 kb on - strand, within GFF233at 238.399 kb on - strand, within GFF233at 238.465 kb on - strand, within GFF233at 238.476 kb on + strand, within GFF233at 238.601 kb on - strand, within GFF233at 238.623 kb on - strand, within GFF233at 238.663 kb on - strand, within GFF233at 238.715 kb on + strand, within GFF233at 238.779 kb on + strand, within GFF233at 238.803 kb on + strand, within GFF233at 238.803 kb on + strand, within GFF233at 238.811 kb on - strand, within GFF233at 238.908 kb on + strand, within GFF233at 238.942 kb on - strand, within GFF233at 238.955 kb on + strand, within GFF233at 238.975 kb on + strand, within GFF233at 238.975 kb on + strand, within GFF233at 239.004 kb on - strand, within GFF233at 239.097 kb on - strandat 239.102 kb on + strandat 239.115 kb on - strandat 239.127 kb on + strandat 239.127 kb on + strandat 239.135 kb on - strandat 239.185 kb on + strandat 239.200 kb on - strandat 239.218 kb on - strandat 239.241 kb on + strandat 239.241 kb on + strandat 239.326 kb on - strand, within GFF234at 239.348 kb on + strand, within GFF234at 239.356 kb on - strand, within GFF234at 239.587 kb on - strandat 239.593 kb on - strandat 239.599 kb on - strandat 239.599 kb on - strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.624 kb on - strand, within GFF235at 239.624 kb on - strand, within GFF235at 239.630 kb on - strand, within GFF235at 239.642 kb on + strand, within GFF235at 239.665 kb on - strand, within GFF235at 239.665 kb on - strand, within GFF235at 239.668 kb on - strand, within GFF235at 239.679 kb on + strand, within GFF235at 239.687 kb on - strand, within GFF235at 239.753 kb on - strand, within GFF235at 239.768 kb on + strand, within GFF235at 239.770 kb on + strand, within GFF235at 239.776 kb on - strand, within GFF235at 239.778 kb on - strand, within GFF235at 239.810 kb on + strand, within GFF235at 239.841 kb on + strand, within GFF235at 239.849 kb on - strand, within GFF235at 239.849 kb on - strand, within GFF235at 239.868 kb on - strandat 239.869 kb on + strandat 239.915 kb on + strandat 239.924 kb on + strandat 239.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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238,295 + GFF233 0.56 +1.5
238,308 + GFF233 0.57 -0.9
238,330 - GFF233 0.58 -1.6
238,350 - GFF233 0.59 -1.2
238,399 - GFF233 0.61 -2.3
238,465 - GFF233 0.64 -0.9
238,476 + GFF233 0.65 -1.8
238,601 - GFF233 0.71 -1.2
238,623 - GFF233 0.72 -0.3
238,663 - GFF233 0.74 -0.3
238,715 + GFF233 0.76 -2.5
238,779 + GFF233 0.79 -1.3
238,803 + GFF233 0.80 -1.6
238,803 + GFF233 0.80 +0.8
238,811 - GFF233 0.81 -0.7
238,908 + GFF233 0.85 +0.4
238,942 - GFF233 0.87 +1.0
238,955 + GFF233 0.88 +0.4
238,975 + GFF233 0.89 -1.0
238,975 + GFF233 0.89 +0.4
239,004 - GFF233 0.90 -0.9
239,097 - -0.2
239,102 + -0.5
239,115 - -1.1
239,127 + -0.5
239,127 + +1.3
239,135 - -0.5
239,185 + +0.4
239,200 - -1.9
239,218 - -0.5
239,241 + -0.6
239,241 + +1.1
239,326 - GFF234 0.19 -1.5
239,348 + GFF234 0.27 -2.3
239,356 - GFF234 0.30 -0.9
239,587 - -0.6
239,593 - +1.8
239,599 - +0.2
239,599 - -0.2
239,609 + +0.3
239,609 + -1.0
239,609 + +0.3
239,609 + +0.5
239,617 - -0.1
239,617 - +1.0
239,624 - GFF235 0.11 -1.2
239,624 - GFF235 0.11 +1.4
239,630 - GFF235 0.13 -2.2
239,642 + GFF235 0.17 +0.4
239,665 - GFF235 0.25 -0.1
239,665 - GFF235 0.25 -0.4
239,668 - GFF235 0.26 +0.3
239,679 + GFF235 0.30 +0.7
239,687 - GFF235 0.32 -0.2
239,753 - GFF235 0.55 -0.2
239,768 + GFF235 0.60 +0.4
239,770 + GFF235 0.61 +0.7
239,776 - GFF235 0.63 +0.1
239,778 - GFF235 0.64 +0.6
239,810 + GFF235 0.75 -0.4
239,841 + GFF235 0.85 +0.2
239,849 - GFF235 0.88 +0.2
239,849 - GFF235 0.88 -1.0
239,868 - +1.4
239,869 + +0.1
239,915 + -1.5
239,924 + +0.1
239,952 + -0.2

Or see this region's nucleotide sequence