Strain Fitness in Sphingobium sp. HT1-2 around GFF2253

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,282,191	+				-1.6
2,282,191	+				+0.5
2,282,207	+				-0.7
2,282,230	-				-0.1
2,282,231	+				-0.1
2,282,239	+				+0.0
2,282,247	-				+0.5
2,282,251	+				-0.3
2,282,252	-				+0.2
2,282,252	-				-0.6
2,282,339	+				+1.5
2,282,356	-				-1.0
2,282,400	-		GFF2251	0.28	+0.1
2,282,429	-		GFF2251	0.41	-2.7
2,282,429	-		GFF2251	0.41	-0.8
2,282,429	-		GFF2251	0.41	+0.3
2,282,429	-		GFF2251	0.41	-0.4
2,282,453	-		GFF2251	0.52	-1.0
2,282,490	+		GFF2251	0.68	-0.5
2,282,490	+		GFF2251	0.68	-1.7
2,282,490	+		GFF2251	0.68	-2.3
2,282,490	+		GFF2251	0.68	+0.7
2,282,498	-		GFF2251	0.72	-0.2
2,282,498	-		GFF2251	0.72	-1.0
2,282,500	+		GFF2251	0.73	-0.9
2,282,500	+		GFF2251	0.73	-1.5
2,282,503	-		GFF2251	0.74	+0.2
2,282,510	+		GFF2251	0.77	-1.4
2,282,518	-		GFF2251	0.81	+0.0
2,282,531	+		GFF2251	0.87	-1.4
2,282,539	-				-0.2
2,282,539	-				+1.0
2,282,539	-				-1.3
2,282,539	-				+1.4
2,282,558	-				-1.6
2,282,568	+				+0.4
2,282,568	+				-0.8
2,282,575	+				-1.1
2,282,618	-				+0.4
2,282,627	+				-0.5
2,282,657	+				-0.1
2,282,683	+				+0.1
2,282,692	+				-0.4
2,282,693	-				-0.0
2,282,693	-				+0.4
2,282,700	-				-0.3
2,282,726	-		GFF2252	0.15	-0.6
2,282,726	-		GFF2252	0.15	-0.9
2,282,758	+		GFF2252	0.35	+0.5
2,282,758	+		GFF2252	0.35	+0.4
2,282,758	+		GFF2252	0.35	-0.7
2,282,758	+		GFF2252	0.35	-0.4
2,282,766	-		GFF2252	0.40	+0.4
2,282,766	-		GFF2252	0.40	+0.4
2,282,785	+		GFF2252	0.52	-0.6
2,282,816	-		GFF2252	0.72	-0.4
2,282,829	-		GFF2252	0.80	-0.4
2,282,843	+		GFF2252	0.89	+0.1
2,282,855	+				-0.5
2,282,855	+				+1.0
2,282,855	+				-0.6
2,282,855	+				+0.9
2,282,863	-				+0.8
2,282,863	-				-0.6
2,282,863	-				-2.0
2,282,894	-				-1.3
2,282,919	+				-1.6
2,282,919	+				+0.1
2,282,927	-				+0.5
2,282,930	-				-0.2
2,282,930	-				-0.1
2,282,942	+				-0.1
2,282,971	+				+0.5
2,282,978	+				-1.8
2,282,979	+				+0.6
2,282,987	-				-1.5
2,282,987	-				-0.7
2,283,007	+				-0.6
2,283,007	+				-1.0
2,283,015	-				+0.3
2,283,018	+				+1.0
2,283,021	-				-0.6
2,283,021	-				-1.1
2,283,023	+				-0.1
2,283,023	+				-1.4
2,283,031	-				+0.3
2,283,031	-				-0.5
2,283,031	-				-0.4
2,283,033	+				+1.1
2,283,033	+				-2.0
2,283,033	+				-0.3
2,283,033	+				-1.3
2,283,040	+				-1.4
2,283,048	-				+0.7
2,283,048	-				-0.4
2,283,064	+				-1.7
2,283,088	+				+0.1
2,283,096	-				+0.2
2,283,096	-				+0.3
2,283,096	-				+0.4
2,283,096	-				-0.0
2,283,140	-				-0.1
2,283,193	+				-1.3
2,283,199	-				-0.6
2,283,203	-				-0.2
2,283,226	+		GFF2253	0.16	+0.2
2,283,234	-		GFF2253	0.18	-1.1
2,283,237	+		GFF2253	0.19	+0.6
2,283,285	+		GFF2253	0.32	-0.3
2,283,314	-		GFF2253	0.40	+0.7
2,283,314	-		GFF2253	0.40	+2.1
2,283,315	+		GFF2253	0.40	-0.3
2,283,316	+		GFF2253	0.40	+1.0
2,283,316	+		GFF2253	0.40	-1.2
2,283,316	+		GFF2253	0.40	+0.4
2,283,324	-		GFF2253	0.42	-1.8
2,283,324	-		GFF2253	0.42	-0.2
2,283,326	+		GFF2253	0.43	+0.4
2,283,326	+		GFF2253	0.43	-1.2
2,283,326	+		GFF2253	0.43	-0.2
2,283,326	+		GFF2253	0.43	-0.5
2,283,326	+		GFF2253	0.43	+1.0
2,283,326	+		GFF2253	0.43	-0.7
2,283,326	+		GFF2253	0.43	+0.6
2,283,326	+		GFF2253	0.43	+0.2
2,283,326	+		GFF2253	0.43	-1.1
2,283,326	+		GFF2253	0.43	-1.2
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	+1.1
2,283,326	+		GFF2253	0.43	+0.6
2,283,326	+		GFF2253	0.43	+0.8
2,283,326	+		GFF2253	0.43	+0.3
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	-0.8
2,283,326	+		GFF2253	0.43	-0.1
2,283,326	+		GFF2253	0.43	-2.5
2,283,326	+		GFF2253	0.43	-0.0
2,283,326	+		GFF2253	0.43	-0.8
2,283,326	+		GFF2253	0.43	-0.5
2,283,326	+		GFF2253	0.43	-1.6
2,283,326	+		GFF2253	0.43	+0.1
2,283,326	+		GFF2253	0.43	-0.9
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	-0.7
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	-3.2
2,283,326	+		GFF2253	0.43	+0.9
2,283,326	+		GFF2253	0.43	-0.1
2,283,326	+		GFF2253	0.43	+0.6
2,283,326	+		GFF2253	0.43	-1.1
2,283,326	+		GFF2253	0.43	+0.1
2,283,326	+		GFF2253	0.43	-0.3
2,283,326	+		GFF2253	0.43	+1.0
2,283,326	+		GFF2253	0.43	-0.4
2,283,326	+		GFF2253	0.43	-0.3
2,283,334	-		GFF2253	0.45	-0.0
2,283,334	-		GFF2253	0.45	+0.3
2,283,334	-		GFF2253	0.45	+0.6
2,283,334	-		GFF2253	0.45	+0.3
2,283,334	-		GFF2253	0.45	-1.0
2,283,334	-		GFF2253	0.45	-0.5
2,283,334	-		GFF2253	0.45	+0.5
2,283,334	-		GFF2253	0.45	+0.6
2,283,334	-		GFF2253	0.45	+0.8
2,283,334	-		GFF2253	0.45	-1.4
2,283,334	-		GFF2253	0.45	+0.3
2,283,334	-		GFF2253	0.45	+0.8
2,283,334	-		GFF2253	0.45	-0.2
2,283,334	-		GFF2253	0.45	+0.1
2,283,334	-		GFF2253	0.45	-0.6
2,283,334	-		GFF2253	0.45	+0.5
2,283,334	-		GFF2253	0.45	-0.6
2,283,334	-		GFF2253	0.45	+1.0
2,283,334	-		GFF2253	0.45	-1.2
2,283,334	-		GFF2253	0.45	-0.2
2,283,334	-		GFF2253	0.45	+0.3
2,283,334	-		GFF2253	0.45	-0.2
2,283,334	-		GFF2253	0.45	+0.1
2,283,334	-		GFF2253	0.45	-0.7
2,283,339	-		GFF2253	0.46	+1.4
2,283,341	+		GFF2253	0.47	-0.9
2,283,341	+		GFF2253	0.47	+0.6
2,283,341	+		GFF2253	0.47	-1.3
2,283,349	-		GFF2253	0.49	-0.7
2,283,349	-		GFF2253	0.49	+1.5
2,283,363	-		GFF2253	0.53	-1.8
2,283,410	+		GFF2253	0.66	-1.7
2,283,410	-		GFF2253	0.66	-0.4
2,283,410	-		GFF2253	0.66	-0.1
2,283,419	+		GFF2253	0.68	+0.7
2,283,424	+		GFF2253	0.69	-1.4
2,283,432	-		GFF2253	0.72	-1.9
2,283,434	+		GFF2253	0.72	+1.1
2,283,437	-		GFF2253	0.73	-0.6
2,283,462	+		GFF2253	0.80	-1.2
2,283,488	+		GFF2253	0.87	-1.2
2,283,488	+		GFF2253	0.87	-0.4
2,283,488	+		GFF2253	0.87	+0.3
2,283,488	-		GFF2253	0.87	+1.0
2,283,496	-		GFF2253	0.89	-1.6
2,283,496	-		GFF2253	0.89	-0.9
2,283,497	-		GFF2253	0.89	+0.4
2,283,558	-				-1.9
2,283,567	+				-0.7
2,283,569	+				-1.8
2,283,574	+				-0.4
2,283,582	-				+1.5
2,283,601	-				+0.7
2,283,601	-				+0.9
2,283,601	-				+0.4
2,283,610	+				-1.4
2,283,610	+				+0.7
2,283,618	+				-1.1
2,283,618	-				-1.6
2,283,618	-				-0.5
2,283,618	-				+0.2
2,283,618	-				-0.1
2,283,618	-				+0.1
2,283,641	+				-3.4
2,283,654	+				-1.7
2,283,698	-		GFF2254	0.20	-1.4
2,283,714	+		GFF2254	0.23	-0.9
2,283,717	-		GFF2254	0.24	-1.8
2,283,726	+		GFF2254	0.26	-2.3
2,283,739	+		GFF2254	0.29	-1.9
2,283,758	-		GFF2254	0.34	-0.2
2,283,768	-		GFF2254	0.36	-2.2
2,283,837	+		GFF2254	0.52	-0.3
2,283,841	-		GFF2254	0.53	-1.1
2,283,850	+		GFF2254	0.55	-1.9
2,283,852	+		GFF2254	0.55	-0.4
2,283,858	+		GFF2254	0.57	-0.1
2,283,860	-		GFF2254	0.57	-1.4
2,283,866	-		GFF2254	0.59	-0.9
2,283,876	-		GFF2254	0.61	-0.3
2,283,924	+		GFF2254	0.72	-2.2
2,283,924	+		GFF2254	0.72	+0.5
2,283,932	-		GFF2254	0.74	-2.2
2,283,934	+		GFF2254	0.74	-2.3
2,283,973	+		GFF2254	0.83	-1.8
2,284,017	-				-1.5
2,284,046	-				-0.1
2,284,046	-				-2.2
2,284,046	-				-1.3
2,284,147	+				-1.5
2,284,149	+				-1.1
2,284,155	-				-1.5
2,284,155	-				-0.7
2,284,169	+				-0.4
2,284,190	+				-1.1
2,284,201	+				-0.0
2,284,201	+				-1.2
2,284,201	+				-0.0
2,284,202	+				-1.3
2,284,202	+				-0.9
2,284,202	+				-0.4
2,284,202	+				-0.6
2,284,202	+				+1.5
2,284,202	+				-0.1
2,284,202	+				+1.9
2,284,202	+				+0.7
2,284,202	+				-0.1
2,284,202	+				+0.4
2,284,202	+				-1.1
2,284,203	-				-1.3
2,284,210	-				-0.8
2,284,210	-				+2.1
2,284,210	-				+0.4
2,284,210	-				-0.4
2,284,210	-				-0.6
2,284,210	-				+1.2
2,284,210	-				-1.6
2,284,210	-				-0.2
2,284,210	-				+0.1
2,284,210	-				+0.5
2,284,210	-				+1.2
2,284,210	-				-0.8
2,284,210	-				-0.4
2,284,210	-				+1.2
2,284,210	-				+0.1
2,284,232	-				-2.5
2,284,257	-				+0.1
2,284,268	+				-0.6
2,284,276	-				-0.8
2,284,290	+				+0.4
2,284,291	-				+0.2
2,284,292	-				-0.9
2,284,292	-				-0.4
2,284,298	-				-0.3
2,284,311	+				+1.1
2,284,319	-				+1.6
2,284,380	+				-0.3
2,284,380	+				-1.8
2,284,382	-				+0.4
2,284,388	-				-1.1
2,284,395	-				-1.3
2,284,409	+				-1.3
2,284,409	+				+0.4
2,284,409	+				+0.6
2,284,412	+				+1.0
2,284,417	-				-1.3
2,284,417	-				+0.6
2,284,417	-				+0.3
2,284,417	-				-1.2
2,284,417	-				-0.9
2,284,420	-				-0.3
2,284,430	+				-0.7
2,284,439	-				-0.8
2,284,439	-				+1.0
2,284,440	-				-0.3
2,284,447	+				-0.2
2,284,477	+				+0.4