Strain Fitness in Sphingobium sp. HT1-2 around GFF2152

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,180,949	+				+0.8
2,180,954	+				-0.8
2,180,954	+				+0.9
2,180,954	-				-2.3
2,180,954	-				-2.0
2,180,957	-				-0.6
2,180,962	-				+0.8
2,180,962	-				-0.9
2,180,967	-				-1.6
2,180,968	-				-0.4
2,180,980	+				+0.4
2,180,980	+				-1.5
2,180,980	+				-0.8
2,180,985	+				+0.0
2,180,988	-				-0.6
2,180,988	-				-0.3
2,180,988	-				-1.4
2,180,988	-				-0.3
2,180,988	-				-1.9
2,180,988	-				+0.6
2,180,996	-				-0.1
2,181,003	+				-0.3
2,181,006	-				-1.2
2,181,017	+				+0.8
2,181,034	+				+0.3
2,181,069	+				+0.4
2,181,069	+				-0.3
2,181,074	+				-2.8
2,181,089	+				+1.0
2,181,129	+		GFF2150	0.17	+1.1
2,181,129	+		GFF2150	0.17	-0.3
2,181,137	-		GFF2150	0.20	+0.4
2,181,149	+		GFF2150	0.24	-0.4
2,181,169	+		GFF2150	0.32	-1.3
2,181,169	+		GFF2150	0.32	-1.3
2,181,174	+		GFF2150	0.33	-0.4
2,181,177	-		GFF2150	0.34	-1.1
2,181,182	-		GFF2150	0.36	-2.1
2,181,191	+		GFF2150	0.39	+0.5
2,181,191	+		GFF2150	0.39	-0.3
2,181,196	+		GFF2150	0.41	+0.3
2,181,197	+		GFF2150	0.42	-0.2
2,181,197	+		GFF2150	0.42	+0.6
2,181,199	-		GFF2150	0.42	-0.1
2,181,199	-		GFF2150	0.42	-0.5
2,181,199	-		GFF2150	0.42	-0.0
2,181,199	-		GFF2150	0.42	-0.6
2,181,208	+		GFF2150	0.46	+0.4
2,181,218	+		GFF2150	0.49	-1.9
2,181,226	-		GFF2150	0.52	-0.2
2,181,226	-		GFF2150	0.52	-0.3
2,181,226	-		GFF2150	0.52	+1.5
2,181,226	-		GFF2150	0.52	-2.0
2,181,239	+		GFF2150	0.57	-0.0
2,181,239	+		GFF2150	0.57	+0.1
2,181,244	+		GFF2150	0.59	-2.2
2,181,244	+		GFF2150	0.59	+0.5
2,181,244	+		GFF2150	0.59	+0.6
2,181,244	+		GFF2150	0.59	-2.2
2,181,249	+		GFF2150	0.61	+1.3
2,181,252	-		GFF2150	0.62	+0.5
2,181,252	-		GFF2150	0.62	-0.6
2,181,252	-		GFF2150	0.62	-2.1
2,181,252	-		GFF2150	0.62	+0.8
2,181,252	-		GFF2150	0.62	-1.2
2,181,252	-		GFF2150	0.62	-0.8
2,181,252	-		GFF2150	0.62	+0.7
2,181,252	-		GFF2150	0.62	-1.2
2,181,252	-		GFF2150	0.62	-1.1
2,181,265	-		GFF2150	0.66	+0.4
2,181,280	+		GFF2150	0.72	-0.2
2,181,284	+		GFF2150	0.73	-0.5
2,181,324	-		GFF2150	0.88	-0.1
2,181,569	-				-0.4
2,181,603	+				+1.1
2,181,616	+				+0.1
2,181,617	-				+0.9
2,181,624	-				-1.2
2,181,624	-				+0.0
2,181,632	+				+0.3
2,181,632	+				+0.3
2,181,642	+				-1.2
2,181,642	+				-1.7
2,181,645	-				-0.1
2,181,650	-				+0.6
2,181,652	+				+0.7
2,181,655	-				+1.1
2,181,660	-				-0.0
2,181,660	-				-0.4
2,181,664	+				+0.6
2,181,682	+		GFF2152	0.10	+0.6
2,181,690	-		GFF2152	0.11	-0.1
2,181,699	+		GFF2152	0.12	+0.5
2,181,707	-		GFF2152	0.12	+0.6
2,181,722	-		GFF2152	0.14	-1.6
2,181,724	+		GFF2152	0.14	+0.9
2,181,731	-		GFF2152	0.14	+0.2
2,181,755	+		GFF2152	0.16	-0.1
2,181,799	+		GFF2152	0.19	-0.4
2,181,800	+		GFF2152	0.19	-0.6
2,181,818	-		GFF2152	0.21	+1.3
2,181,818	-		GFF2152	0.21	-2.3
2,181,830	+		GFF2152	0.22	-1.1
2,181,840	+		GFF2152	0.23	+0.4
2,181,843	-		GFF2152	0.23	+1.8
2,181,843	-		GFF2152	0.23	-0.4
2,181,849	+		GFF2152	0.23	-0.7
2,181,849	+		GFF2152	0.23	+0.5
2,181,857	-		GFF2152	0.24	-1.8
2,181,885	-		GFF2152	0.26	-1.2
2,181,885	-		GFF2152	0.26	-0.6
2,181,885	-		GFF2152	0.26	-0.2
2,181,885	-		GFF2152	0.26	+0.6
2,181,903	+		GFF2152	0.27	-1.2
2,181,903	+		GFF2152	0.27	+1.0
2,181,903	+		GFF2152	0.27	-0.0
2,181,903	+		GFF2152	0.27	+0.9
2,181,903	+		GFF2152	0.27	-0.0
2,181,903	+		GFF2152	0.27	+0.6
2,181,903	+		GFF2152	0.27	+0.4
2,181,903	+		GFF2152	0.27	+0.9
2,181,903	+		GFF2152	0.27	-0.2
2,181,903	+		GFF2152	0.27	-0.5
2,181,903	+		GFF2152	0.27	-0.0
2,181,903	+		GFF2152	0.27	+0.5
2,181,903	+		GFF2152	0.27	-0.3
2,181,911	-		GFF2152	0.28	-0.2
2,181,911	-		GFF2152	0.28	-0.6
2,181,911	-		GFF2152	0.28	-0.8
2,181,911	-		GFF2152	0.28	-0.4
2,181,911	-		GFF2152	0.28	-1.9
2,181,911	-		GFF2152	0.28	-0.4
2,181,911	-		GFF2152	0.28	-0.8
2,181,911	-		GFF2152	0.28	-0.6
2,181,911	-		GFF2152	0.28	-0.6
2,181,911	-		GFF2152	0.28	+0.9
2,181,922	+		GFF2152	0.29	+0.1
2,181,933	-		GFF2152	0.30	+0.5
2,181,933	-		GFF2152	0.30	+1.4
2,181,935	+		GFF2152	0.30	-0.4
2,181,936	+		GFF2152	0.30	-1.8
2,181,940	+		GFF2152	0.30	-0.6
2,181,948	-		GFF2152	0.31	-0.8
2,181,958	-		GFF2152	0.32	-0.6
2,181,958	-		GFF2152	0.32	-0.3
2,181,958	-		GFF2152	0.32	+0.1
2,181,979	+		GFF2152	0.33	-1.2
2,181,979	+		GFF2152	0.33	+1.1
2,182,006	-		GFF2152	0.35	+0.4
2,182,031	+		GFF2152	0.37	+0.3
2,182,031	+		GFF2152	0.37	-0.1
2,182,032	+		GFF2152	0.37	+0.2
2,182,039	+		GFF2152	0.38	+1.8
2,182,047	-		GFF2152	0.38	-0.7
2,182,051	+		GFF2152	0.39	+0.1
2,182,059	-		GFF2152	0.39	+0.0
2,182,061	+		GFF2152	0.39	-0.1
2,182,061	+		GFF2152	0.39	-0.7
2,182,099	-		GFF2152	0.42	-0.6
2,182,124	+		GFF2152	0.44	+0.0
2,182,175	-		GFF2152	0.48	-1.0
2,182,181	-		GFF2152	0.49	-1.2
2,182,183	-		GFF2152	0.49	-0.0
2,182,232	-		GFF2152	0.52	-0.8
2,182,248	+		GFF2152	0.54	-1.1
2,182,263	+		GFF2152	0.55	+0.6
2,182,270	-		GFF2152	0.55	-0.6
2,182,271	-		GFF2152	0.55	+0.3
2,182,271	-		GFF2152	0.55	-1.5
2,182,272	+		GFF2152	0.55	+1.0
2,182,300	+		GFF2152	0.58	+1.1
2,182,307	+		GFF2152	0.58	-0.2
2,182,327	+		GFF2152	0.60	-1.5
2,182,333	-		GFF2152	0.60	+0.1
2,182,333	-		GFF2152	0.60	-1.4
2,182,335	+		GFF2152	0.60	-0.1
2,182,335	-		GFF2152	0.60	-0.7
2,182,352	+		GFF2152	0.62	+0.0
2,182,352	+		GFF2152	0.62	-1.1
2,182,360	-		GFF2152	0.62	-0.2
2,182,360	-		GFF2152	0.62	+0.6
2,182,360	-		GFF2152	0.62	-0.9
2,182,410	-		GFF2152	0.66	-1.3
2,182,424	-		GFF2152	0.67	-0.2
2,182,425	+		GFF2152	0.67	+2.0
2,182,425	+		GFF2152	0.67	+0.4
2,182,425	+		GFF2152	0.67	-0.8
2,182,425	+		GFF2152	0.67	+0.3
2,182,425	+		GFF2152	0.67	+0.2
2,182,433	-		GFF2152	0.68	+0.3
2,182,433	-		GFF2152	0.68	+0.8
2,182,433	-		GFF2152	0.68	-0.6
2,182,433	-		GFF2152	0.68	-1.0
2,182,435	+		GFF2152	0.68	-0.2
2,182,461	+		GFF2152	0.70	-1.7
2,182,461	+		GFF2152	0.70	-0.7
2,182,465	+		GFF2152	0.70	+1.5
2,182,469	-		GFF2152	0.70	-1.5
2,182,469	-		GFF2152	0.70	+0.5
2,182,506	+		GFF2152	0.73	-1.4
2,182,554	+		GFF2152	0.77	-0.5
2,182,554	+		GFF2152	0.77	-1.1
2,182,562	-		GFF2152	0.78	+0.4
2,182,562	-		GFF2152	0.78	-1.3
2,182,599	-		GFF2152	0.80	+0.9
2,182,599	-		GFF2152	0.80	-2.0
2,182,602	-		GFF2152	0.81	-0.2
2,182,605	+		GFF2152	0.81	-0.2
2,182,610	+		GFF2152	0.81	-2.4
2,182,610	+		GFF2152	0.81	-1.0
2,182,610	+		GFF2152	0.81	+0.4
2,182,618	-		GFF2152	0.82	-1.5
2,182,631	-		GFF2152	0.83	+1.0
2,182,635	+		GFF2152	0.83	+1.2
2,182,635	+		GFF2152	0.83	+0.2
2,182,635	+		GFF2152	0.83	+1.3
2,182,635	+		GFF2152	0.83	-0.4
2,182,643	-		GFF2152	0.84	-0.4
2,182,643	-		GFF2152	0.84	-0.5
2,182,643	-		GFF2152	0.84	-1.6
2,182,643	-		GFF2152	0.84	-0.3
2,182,643	-		GFF2152	0.84	+0.1
2,182,656	+		GFF2152	0.85	-2.4
2,182,661	+		GFF2152	0.85	-0.2
2,182,680	-		GFF2152	0.87	-0.6
2,182,680	-		GFF2152	0.87	-0.6
2,182,680	-		GFF2152	0.87	+0.5
2,182,685	+		GFF2152	0.87	+1.4
2,182,702	+		GFF2152	0.88	-0.6
2,182,731	+				+0.3
2,182,731	+				-1.4
2,182,738	+				-0.2
2,182,738	+				+0.8
2,182,738	+				-1.6
2,182,738	+				-1.0
2,182,738	-				+0.7
2,182,741	+				-0.1
2,182,746	-				-1.2
2,182,818	+				-0.7
2,182,820	+				-0.5
2,182,820	+				+0.1
2,182,820	+				-0.1
2,182,820	-				-1.3
2,182,824	-				+0.5
2,182,824	-				-0.8
2,182,826	-				+0.6
2,182,829	-				+0.7
2,182,829	-				-1.0
2,182,831	+				-0.9
2,182,839	-				+1.4
2,182,839	-				-1.1
2,182,841	-				-0.6
2,182,851	+				+0.7
2,182,852	+				+0.1
2,182,887	+				-0.2
2,182,887	+				-0.5
2,182,896	+				-0.2
2,182,920	+				-0.4
2,182,920	+				-0.8
2,182,928	-				-0.5
2,182,928	-				-0.2
2,182,928	-				-0.8
2,182,928	-				-0.4
2,182,928	-				-0.6
2,182,928	-				-0.4
2,182,957	+				+1.3
2,182,963	-				-0.2
2,182,970	-				-1.5
2,182,970	-				-0.6
2,182,982	-				+0.9
2,182,988	+				+0.3
2,182,996	-				-0.2
2,182,998	+				-1.1
2,182,998	+				-1.8
2,183,006	-				+0.7
2,183,006	-				-0.5
2,183,006	-				-0.2
2,183,006	-				-0.4
2,183,011	-				-0.3
2,183,013	+				-1.2
2,183,022	-				-0.1
2,183,077	-		GFF2153	0.15	-0.6
2,183,092	-		GFF2153	0.18	-0.2
2,183,100	-		GFF2153	0.19	-0.8
2,183,102	+		GFF2153	0.20	+0.0
2,183,102	+		GFF2153	0.20	+0.7
2,183,105	-		GFF2153	0.20	+0.6
2,183,107	+		GFF2153	0.21	-0.7
2,183,110	-		GFF2153	0.21	-1.9
2,183,110	-		GFF2153	0.21	-0.9
2,183,110	-		GFF2153	0.21	-1.2
2,183,110	-		GFF2153	0.21	-1.6
2,183,110	-		GFF2153	0.21	+0.5
2,183,126	+		GFF2153	0.25	+0.6
2,183,130	+		GFF2153	0.26	-0.2
2,183,134	-		GFF2153	0.26	-1.8
2,183,138	-		GFF2153	0.27	+1.2
2,183,139	+		GFF2153	0.28	+0.1
2,183,145	-		GFF2153	0.29	-0.2
2,183,147	-		GFF2153	0.29	+1.1
2,183,168	+		GFF2153	0.34	-1.6
2,183,176	+		GFF2153	0.35	+1.6
2,183,181	+		GFF2153	0.36	-0.7
2,183,181	+		GFF2153	0.36	-0.2
2,183,181	+		GFF2153	0.36	-1.9
2,183,181	+		GFF2153	0.36	-1.1
2,183,181	+		GFF2153	0.36	+0.4
2,183,184	-		GFF2153	0.37	-1.4
2,183,184	-		GFF2153	0.37	-0.2
2,183,189	-		GFF2153	0.38	-2.0
2,183,189	-		GFF2153	0.38	+0.8
2,183,189	-		GFF2153	0.38	-2.1
2,183,189	-		GFF2153	0.38	-1.6
2,183,192	+		GFF2153	0.39	-1.4
2,183,211	+		GFF2153	0.42	+0.5
2,183,220	+		GFF2153	0.44	-0.3
2,183,221	+		GFF2153	0.45	-1.3
2,183,221	+		GFF2153	0.45	+0.8
2,183,221	+		GFF2153	0.45	-0.9
2,183,228	-		GFF2153	0.46	-0.3
2,183,228	-		GFF2153	0.46	-1.2
2,183,228	-		GFF2153	0.46	-0.6
2,183,229	-		GFF2153	0.46	-0.8
2,183,229	-		GFF2153	0.46	+1.5
2,183,229	-		GFF2153	0.46	-1.3
2,183,229	-		GFF2153	0.46	+0.1
2,183,229	-		GFF2153	0.46	-1.6
2,183,245	-		GFF2153	0.50	-0.9
2,183,255	-		GFF2153	0.52	+0.1
2,183,281	+		GFF2153	0.57	-0.6
2,183,283	-		GFF2153	0.57	+0.8
2,183,286	+		GFF2153	0.58	-0.4
2,183,286	+		GFF2153	0.58	-0.8
2,183,294	-		GFF2153	0.60	-0.7
2,183,312	-		GFF2153	0.64	+0.6
2,183,333	+		GFF2153	0.68	-0.7
2,183,341	+		GFF2153	0.70	-1.0
2,183,341	-		GFF2153	0.70	-0.2
2,183,357	+		GFF2153	0.73	+1.9
2,183,357	+		GFF2153	0.73	-0.8
2,183,357	+		GFF2153	0.73	+0.8
2,183,365	-		GFF2153	0.75	-0.4
2,183,365	-		GFF2153	0.75	-0.9
2,183,367	+		GFF2153	0.75	-2.5
2,183,380	-		GFF2153	0.78	+0.3
2,183,381	+		GFF2153	0.78	-1.1
2,183,381	+		GFF2153	0.78	+0.8
2,183,384	+		GFF2153	0.79	-0.1
2,183,386	+		GFF2153	0.79	+0.1
2,183,386	+		GFF2153	0.79	-0.2
2,183,386	+		GFF2153	0.79	+0.6
2,183,386	+		GFF2153	0.79	+0.5
2,183,386	+		GFF2153	0.79	+0.7
2,183,386	+		GFF2153	0.79	+0.5
2,183,389	-		GFF2153	0.80	-1.5
2,183,391	+		GFF2153	0.80	-0.9
2,183,391	+		GFF2153	0.80	+0.1
2,183,391	+		GFF2153	0.80	-0.1
2,183,394	-		GFF2153	0.81	-0.4
2,183,399	-		GFF2153	0.82	-2.5
2,183,399	-		GFF2153	0.82	-0.7
2,183,399	-		GFF2153	0.82	-0.8
2,183,399	-		GFF2153	0.82	-1.6
2,183,419	+		GFF2153	0.86	+0.4
2,183,419	+		GFF2153	0.86	-1.9
2,183,419	+		GFF2153	0.86	+0.4
2,183,422	-		GFF2153	0.86	-0.0
2,183,427	-		GFF2153	0.88	+0.1
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2,183,447	+				-0.6
2,183,450	+				+0.4
2,183,452	+				-0.5
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2,183,460	-				+0.2
2,183,460	-				-1.1
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2,183,460	-				-1.3
2,183,460	-				+0.2
2,183,460	-				-0.4
2,183,467	+				+0.8
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2,183,481	+				+0.2
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2,183,481	+				+0.4
2,183,494	-				+0.6
2,183,494	-				-1.0
2,183,523	+		GFF2154	0.23	-0.7
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2,183,558	-		GFF2154	0.43	-1.2
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2,183,855	+		GFF2155	0.66	-0.9
2,183,855	+		GFF2155	0.66	+1.1