Strain Fitness in Sphingobium sp. HT1-2 around GFF2060

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,095,836	-		GFF2058	0.78	+0.7
2,095,887	-		GFF2058	0.86	-1.4
2,095,999	+				+0.1
2,096,037	+		GFF2059	0.10	-0.6
2,096,168	-		GFF2059	0.32	-0.4
2,096,168	-		GFF2059	0.32	-1.3
2,096,168	-		GFF2059	0.32	-0.1
2,096,168	-		GFF2059	0.32	-1.1
2,096,195	-		GFF2059	0.36	-0.7
2,096,200	-		GFF2059	0.37	+0.4
2,096,200	-		GFF2059	0.37	+0.5
2,096,316	-		GFF2059	0.56	-0.7
2,096,340	+		GFF2059	0.60	-1.5
2,096,348	-		GFF2059	0.62	+0.5
2,096,389	+		GFF2059	0.68	-0.3
2,096,389	+		GFF2059	0.68	+0.1
2,096,397	-		GFF2059	0.70	-0.2
2,096,397	-		GFF2059	0.70	+0.3
2,096,397	-		GFF2059	0.70	-1.2
2,096,397	-		GFF2059	0.70	-1.0
2,096,397	-		GFF2059	0.70	+0.3
2,096,402	+		GFF2059	0.70	-1.7
2,096,424	-		GFF2059	0.74	+0.3
2,096,437	-		GFF2059	0.76	-1.3
2,096,506	+		GFF2059	0.88	-2.8
2,096,520	-				-1.4
2,096,535	+				+0.1
2,096,538	-				-0.4
2,096,548	-				+1.0
2,096,601	+				-0.2
2,096,619	-				-0.1
2,096,629	-				-1.2
2,096,644	-				+2.0
2,096,644	-				-1.1
2,096,690	-				-0.9
2,096,690	-				-0.1
2,096,703	-				+0.3
2,096,711	+				+0.8
2,096,718	+				-0.1
2,096,718	+				-0.6
2,096,718	+				-0.3
2,096,718	+				+0.5
2,096,723	+				-0.1
2,096,726	-				-0.7
2,096,726	-				-1.1
2,096,726	-				-1.5
2,096,771	-				-0.3
2,096,819	+				-2.2
2,096,844	+				-3.0
2,096,862	-				-1.3
2,096,983	+		GFF2060	0.10	-2.6
2,096,983	+		GFF2060	0.10	-2.4
2,096,996	+		GFF2060	0.11	-0.6
2,096,996	+		GFF2060	0.11	-2.4
2,097,001	+		GFF2060	0.11	-3.0
2,097,004	-		GFF2060	0.12	-2.9
2,097,004	-		GFF2060	0.12	-2.8
2,097,015	-		GFF2060	0.12	-2.5
2,097,082	-		GFF2060	0.16	-2.3
2,097,093	-		GFF2060	0.17	-2.7
2,097,106	+		GFF2060	0.18	-1.6
2,097,122	-		GFF2060	0.19	-2.5
2,097,122	-		GFF2060	0.19	-0.2
2,097,122	-		GFF2060	0.19	-2.3
2,097,122	-		GFF2060	0.19	-1.9
2,097,122	-		GFF2060	0.19	-1.7
2,097,169	+		GFF2060	0.21	-3.5
2,097,169	+		GFF2060	0.21	-2.5
2,097,169	+		GFF2060	0.21	-0.2
2,097,177	-		GFF2060	0.22	-2.6
2,097,177	-		GFF2060	0.22	-1.6
2,097,186	+		GFF2060	0.22	-1.3
2,097,218	+		GFF2060	0.24	-2.5
2,097,226	-		GFF2060	0.25	-2.0
2,097,282	-		GFF2060	0.28	-1.9
2,097,308	+		GFF2060	0.30	-1.3
2,097,373	+		GFF2060	0.34	+0.3
2,097,373	+		GFF2060	0.34	-1.5
2,097,382	+		GFF2060	0.34	-1.6
2,097,405	-		GFF2060	0.35	-2.6
2,097,433	+		GFF2060	0.37	-0.7
2,097,440	-		GFF2060	0.38	+0.3
2,097,441	-		GFF2060	0.38	-2.5
2,097,465	+		GFF2060	0.39	-0.6
2,097,473	+		GFF2060	0.40	-1.8
2,097,473	+		GFF2060	0.40	-2.1
2,097,473	+		GFF2060	0.40	-2.1
2,097,473	+		GFF2060	0.40	-0.7
2,097,473	+		GFF2060	0.40	-2.9
2,097,481	-		GFF2060	0.40	-2.5
2,097,481	-		GFF2060	0.40	-1.3
2,097,486	-		GFF2060	0.40	+0.7
2,097,547	+		GFF2060	0.44	-3.6
2,097,547	+		GFF2060	0.44	-2.2
2,097,555	-		GFF2060	0.44	-2.1
2,097,555	-		GFF2060	0.44	-1.9
2,097,555	-		GFF2060	0.44	-2.8
2,097,557	-		GFF2060	0.45	-0.5
2,097,577	+		GFF2060	0.46	+0.8
2,097,577	+		GFF2060	0.46	-1.9
2,097,619	-		GFF2060	0.48	-2.1
2,097,694	-		GFF2060	0.53	-0.7
2,097,706	+		GFF2060	0.53	-1.6
2,097,708	-		GFF2060	0.54	-0.4
2,097,719	-		GFF2060	0.54	-1.5
2,097,734	+		GFF2060	0.55	-1.4
2,097,742	+		GFF2060	0.56	-1.5
2,097,742	-		GFF2060	0.56	-1.2
2,097,743	-		GFF2060	0.56	-2.9
2,097,782	+		GFF2060	0.58	-1.6
2,097,785	-		GFF2060	0.58	-4.0
2,097,878	+		GFF2060	0.64	-2.0
2,097,878	+		GFF2060	0.64	-2.5
2,097,878	+		GFF2060	0.64	-1.7
2,097,878	+		GFF2060	0.64	-2.6
2,097,878	+		GFF2060	0.64	-3.1
2,097,878	+		GFF2060	0.64	-2.0
2,097,886	-		GFF2060	0.64	-0.9
2,097,886	-		GFF2060	0.64	-2.0
2,097,886	-		GFF2060	0.64	-0.4
2,097,886	-		GFF2060	0.64	-2.4
2,097,886	-		GFF2060	0.64	-0.8
2,097,886	-		GFF2060	0.64	-3.0
2,097,897	-		GFF2060	0.65	-2.9
2,097,915	+		GFF2060	0.66	-1.2
2,097,915	+		GFF2060	0.66	-1.6
2,097,915	+		GFF2060	0.66	-2.3
2,097,915	+		GFF2060	0.66	-1.5
2,097,915	+		GFF2060	0.66	-3.1
2,097,915	+		GFF2060	0.66	-1.0
2,097,915	+		GFF2060	0.66	-2.9
2,097,915	+		GFF2060	0.66	-2.7
2,097,915	-		GFF2060	0.66	-1.2
2,097,923	-		GFF2060	0.66	-0.7
2,097,923	-		GFF2060	0.66	-2.5
2,097,936	+		GFF2060	0.67	-0.8
2,097,963	+		GFF2060	0.69	-2.5
2,097,963	+		GFF2060	0.69	-0.6
2,097,995	+		GFF2060	0.71	-3.0
2,097,995	+		GFF2060	0.71	-0.9
2,098,003	+		GFF2060	0.71	-1.8
2,098,003	-		GFF2060	0.71	-2.5
2,098,003	-		GFF2060	0.71	-0.0
2,098,003	-		GFF2060	0.71	-1.9
2,098,010	-		GFF2060	0.72	-0.2
2,098,013	+		GFF2060	0.72	-3.4
2,098,021	-		GFF2060	0.72	-2.1
2,098,044	-		GFF2060	0.74	-2.4
2,098,052	+		GFF2060	0.74	-3.5
2,098,105	+		GFF2060	0.77	-0.3
2,098,116	+		GFF2060	0.78	-3.1
2,098,141	+		GFF2060	0.79	-2.6
2,098,147	-		GFF2060	0.80	-1.3
2,098,149	-		GFF2060	0.80	-0.4
2,098,149	-		GFF2060	0.80	-2.1
2,098,223	-		GFF2060	0.84	-2.5
2,098,236	+		GFF2060	0.85	-3.0
2,098,249	+		GFF2060	0.86	-0.9
2,098,251	-		GFF2060	0.86	-2.3
2,098,253	+		GFF2060	0.86	-1.9
2,098,289	+		GFF2060	0.88	-2.4
2,098,304	-		GFF2060	0.89	-2.8
2,098,304	-		GFF2060	0.89	-2.2
2,098,393	-				-3.8
2,098,397	+				-1.2
2,098,436	+				-0.0
2,098,436	+				-2.1
2,098,436	+				-2.6
2,098,436	+				-4.5
2,098,436	+				-2.4
2,098,436	+				-1.4
2,098,436	+				-2.2
2,098,436	+				-1.3
2,098,436	+				-1.2
2,098,436	+				-2.8
2,098,436	+				-1.5
2,098,436	+				-1.8
2,098,436	+				-0.6
2,098,436	+				-2.5
2,098,444	-				-1.9
2,098,444	-				-2.3
2,098,444	-				-1.8
2,098,444	-				-2.1
2,098,444	-				-2.6
2,098,444	-				-2.0
2,098,444	-				-4.0
2,098,444	-				-2.7
2,098,463	+				-1.5
2,098,501	-				+1.2
2,098,524	-				+1.6
2,098,549	-				+1.2
2,098,551	+				-0.0
2,098,556	+				+0.1
2,098,556	+				+0.7
2,098,570	-				+0.5
2,098,579	+				+0.3
2,098,604	+				-0.5
2,098,628	+				-1.0
2,098,628	-				+0.7
2,098,638	+				-0.5
2,098,638	-				+0.2
2,098,646	-				+0.2
2,098,697	-				+0.6
2,098,727	-				-0.8
2,098,736	-				-0.4
2,098,758	+		GFF2061	0.11	+1.2
2,098,891	+		GFF2061	0.21	-1.9
2,098,904	-		GFF2061	0.22	-1.2
2,098,928	+		GFF2061	0.23	+0.3
2,098,931	-		GFF2061	0.24	-0.4
2,098,936	-		GFF2061	0.24	+0.8
2,098,988	+		GFF2061	0.28	-0.2
2,098,996	-		GFF2061	0.28	+0.1
2,099,015	+		GFF2061	0.30	-0.1
2,099,022	+		GFF2061	0.30	-0.3
2,099,022	+		GFF2061	0.30	-0.6
2,099,060	+		GFF2061	0.33	+0.9
2,099,068	-		GFF2061	0.34	-0.0
2,099,108	-		GFF2061	0.37	-0.3
2,099,118	-		GFF2061	0.37	+1.2
2,099,129	+		GFF2061	0.38	-0.6
2,099,129	+		GFF2061	0.38	-0.8
2,099,138	+		GFF2061	0.39	+0.1
2,099,192	+		GFF2061	0.43	+0.6
2,099,192	+		GFF2061	0.43	+0.4
2,099,192	+		GFF2061	0.43	-1.0
2,099,200	-		GFF2061	0.43	+0.3
2,099,200	-		GFF2061	0.43	-1.5
2,099,224	+		GFF2061	0.45	+0.4
2,099,239	-		GFF2061	0.46	-2.6
2,099,257	-		GFF2061	0.47	+0.6
2,099,259	+		GFF2061	0.47	-0.2
2,099,311	+		GFF2061	0.51	+1.0
2,099,372	+		GFF2061	0.56	+0.9
2,099,419	-		GFF2061	0.59	+1.4
2,099,433	+		GFF2061	0.60	-1.1
2,099,440	-		GFF2061	0.61	-2.1
2,099,440	-		GFF2061	0.61	+0.1
2,099,440	-		GFF2061	0.61	+0.9
2,099,441	-		GFF2061	0.61	-0.6
2,099,462	-		GFF2061	0.62	-2.9
2,099,462	-		GFF2061	0.62	-0.0
2,099,476	-		GFF2061	0.63	+0.1