Strain Fitness in Sphingobium sp. HT1-2 around GFF2056

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,092,648	+		GFF2054	0.65	+0.8
2,092,648	+		GFF2054	0.65	-1.5
2,092,651	+		GFF2054	0.65	-3.1
2,092,651	+		GFF2054	0.65	-1.3
2,092,659	-		GFF2054	0.65	-2.5
2,092,673	+		GFF2054	0.66	-2.0
2,092,709	+		GFF2054	0.68	-2.7
2,092,717	-		GFF2054	0.69	-2.3
2,092,722	-		GFF2054	0.69	-2.3
2,092,722	-		GFF2054	0.69	-0.8
2,092,732	-		GFF2054	0.69	-0.2
2,092,789	-		GFF2054	0.73	-0.4
2,092,795	-		GFF2054	0.73	-2.4
2,092,817	+		GFF2054	0.74	-2.2
2,092,825	-		GFF2054	0.75	-1.0
2,092,906	+		GFF2054	0.79	-3.2
2,092,939	-		GFF2054	0.81	-2.5
2,092,953	-		GFF2054	0.82	-2.5
2,092,968	+		GFF2054	0.83	-3.2
2,092,973	-		GFF2054	0.83	-1.0
2,092,981	-		GFF2054	0.84	-2.7
2,093,005	+		GFF2054	0.85	-2.3
2,093,028	+		GFF2054	0.86	-2.5
2,093,045	+		GFF2054	0.87	-2.9
2,093,053	-		GFF2054	0.88	-1.9
2,093,053	-		GFF2054	0.88	-0.8
2,093,053	-		GFF2054	0.88	-1.1
2,093,158	+				-1.9
2,093,166	-				-2.8
2,093,214	+				+0.0
2,093,214	+				-1.1
2,093,214	+				-0.6
2,093,214	+				-0.6
2,093,214	+				+0.4
2,093,222	-				-2.2
2,093,232	-				-2.7
2,093,237	+				-0.6
2,093,247	+				+1.0
2,093,247	+				+1.0
2,093,248	+				-0.6
2,093,255	-				-0.3
2,093,260	+				-0.3
2,093,260	+				+0.1
2,093,260	+				+1.1
2,093,260	+				-0.5
2,093,263	-				-0.4
2,093,263	-				-0.0
2,093,268	-				-0.5
2,093,268	-				+1.6
2,093,268	-				+0.5
2,093,268	-				-0.2
2,093,268	-				-0.5
2,093,268	-				-3.2
2,093,268	-				+0.7
2,093,268	-				+0.1
2,093,268	-				-1.0
2,093,268	-				-2.0
2,093,273	-				+1.3
2,093,319	+		GFF2055	0.16	-0.6
2,093,327	-		GFF2055	0.18	-0.6
2,093,327	-		GFF2055	0.18	-1.1
2,093,327	-		GFF2055	0.18	-2.3
2,093,338	-		GFF2055	0.22	+0.7
2,093,338	-		GFF2055	0.22	-1.1
2,093,344	+		GFF2055	0.23	+0.7
2,093,365	+		GFF2055	0.29	+0.2
2,093,372	+		GFF2055	0.31	-0.5
2,093,373	-		GFF2055	0.32	-0.7
2,093,392	+		GFF2055	0.37	-0.0
2,093,400	-		GFF2055	0.39	-2.7
2,093,400	-		GFF2055	0.39	-1.0
2,093,414	+		GFF2055	0.43	-0.9
2,093,422	-		GFF2055	0.46	+1.6
2,093,437	+		GFF2055	0.50	-0.9
2,093,465	+		GFF2055	0.58	-1.2
2,093,477	-		GFF2055	0.61	-1.6
2,093,478	-		GFF2055	0.62	+0.1
2,093,499	-		GFF2055	0.68	-0.6
2,093,526	+		GFF2055	0.76	+1.1
2,093,541	-		GFF2055	0.80	-0.2
2,093,541	-		GFF2055	0.80	-0.2
2,093,546	-		GFF2055	0.81	-0.3
2,093,579	-				-0.6
2,093,625	+				-2.4
2,093,658	+				-2.4
2,093,658	+				-1.7
2,093,666	-		GFF2056	0.11	-1.8
2,093,689	+		GFF2056	0.15	-1.9
2,093,697	-		GFF2056	0.17	-1.0
2,093,728	+		GFF2056	0.23	-2.2
2,093,756	-		GFF2056	0.28	-1.4
2,093,756	-		GFF2056	0.28	-1.0
2,093,793	-		GFF2056	0.35	-2.5
2,093,802	-		GFF2056	0.37	-2.6
2,093,813	+		GFF2056	0.39	-2.5
2,093,821	-		GFF2056	0.41	-1.7
2,093,827	-		GFF2056	0.42	-0.2
2,093,864	+		GFF2056	0.49	-3.3
2,093,877	-		GFF2056	0.52	+0.3
2,093,893	+		GFF2056	0.55	-0.4
2,093,893	+		GFF2056	0.55	-1.5
2,093,893	+		GFF2056	0.55	-1.9
2,093,901	-		GFF2056	0.56	-2.1
2,093,901	-		GFF2056	0.56	+0.3
2,093,901	-		GFF2056	0.56	-0.9
2,093,901	-		GFF2056	0.56	-0.6
2,093,903	+		GFF2056	0.57	-1.5
2,093,903	+		GFF2056	0.57	-3.1
2,093,903	+		GFF2056	0.57	-3.1
2,093,903	+		GFF2056	0.57	-2.0
2,093,903	+		GFF2056	0.57	-2.9
2,093,903	+		GFF2056	0.57	-3.5
2,093,903	+		GFF2056	0.57	-0.6
2,093,903	+		GFF2056	0.57	-2.2
2,093,903	+		GFF2056	0.57	-2.8
2,093,903	+		GFF2056	0.57	-2.6
2,093,903	+		GFF2056	0.57	-1.7
2,093,903	+		GFF2056	0.57	-1.7
2,093,903	+		GFF2056	0.57	-3.0
2,093,911	-		GFF2056	0.58	-1.7
2,093,911	-		GFF2056	0.58	-2.1
2,093,911	-		GFF2056	0.58	-2.9
2,093,911	-		GFF2056	0.58	-3.2
2,093,911	-		GFF2056	0.58	-2.0
2,093,911	-		GFF2056	0.58	-2.3
2,093,911	-		GFF2056	0.58	+0.2
2,093,911	-		GFF2056	0.58	-1.4
2,093,911	-		GFF2056	0.58	-2.2
2,093,911	-		GFF2056	0.58	-0.0
2,093,911	-		GFF2056	0.58	-0.0
2,093,911	-		GFF2056	0.58	-1.3
2,093,911	-		GFF2056	0.58	-0.9
2,093,911	-		GFF2056	0.58	-2.5
2,093,911	-		GFF2056	0.58	-0.7
2,093,927	+		GFF2056	0.61	-3.2
2,093,930	-		GFF2056	0.62	-1.8
2,093,941	-		GFF2056	0.64	-2.2
2,093,953	-		GFF2056	0.66	-1.9
2,093,960	-		GFF2056	0.68	-1.1
2,093,965	+		GFF2056	0.69	-2.7
2,093,968	-		GFF2056	0.69	-2.4
2,093,983	+		GFF2056	0.72	-3.3
2,093,983	-		GFF2056	0.72	-1.0
2,093,988	+		GFF2056	0.73	-3.0
2,094,021	+		GFF2056	0.80	-1.9
2,094,029	-		GFF2056	0.81	-2.3
2,094,064	+		GFF2056	0.88	-0.0
2,094,068	+		GFF2056	0.89	-2.1
2,094,076	-				-2.3
2,094,076	-				-2.9
2,094,076	-				-2.1
2,094,076	-				-1.2
2,094,076	-				-2.6
2,094,096	+				-2.5
2,094,104	-				-0.6
2,094,165	+				+0.9
2,094,173	+				-0.5
2,094,173	+				+0.2
2,094,253	+				-2.3
2,094,253	+				-3.3
2,094,261	-				-0.1
2,094,261	-				+0.3
2,094,280	+				-1.7
2,094,296	+				-2.4
2,094,296	+				-1.4
2,094,363	-		GFF2057	0.15	-2.5
2,094,380	-		GFF2057	0.16	-3.3
2,094,396	+		GFF2057	0.18	-1.7
2,094,415	+		GFF2057	0.20	-3.1
2,094,415	+		GFF2057	0.20	-2.8
2,094,534	+		GFF2057	0.31	-3.6
2,094,539	+		GFF2057	0.32	-1.7
2,094,600	+		GFF2057	0.38	-1.5
2,094,608	+		GFF2057	0.39	-2.7
2,094,609	+		GFF2057	0.39	-2.5
2,094,613	+		GFF2057	0.39	-2.8
2,094,613	+		GFF2057	0.39	-1.5
2,094,613	+		GFF2057	0.39	-2.2
2,094,615	+		GFF2057	0.39	-1.7
2,094,621	-		GFF2057	0.40	-3.0
2,094,621	-		GFF2057	0.40	-0.2
2,094,621	-		GFF2057	0.40	-1.9
2,094,638	-		GFF2057	0.41	-1.8
2,094,638	-		GFF2057	0.41	-2.1
2,094,650	+		GFF2057	0.43	-2.6
2,094,650	+		GFF2057	0.43	-1.5
2,094,677	-		GFF2057	0.45	-0.9
2,094,679	-		GFF2057	0.45	-3.2
2,094,683	-		GFF2057	0.46	-1.2
2,094,707	+		GFF2057	0.48	-1.7
2,094,712	+		GFF2057	0.49	-2.2
2,094,712	+		GFF2057	0.49	-1.8
2,094,712	+		GFF2057	0.49	-2.5
2,094,712	+		GFF2057	0.49	-2.2
2,094,715	-		GFF2057	0.49	-4.2
2,094,715	-		GFF2057	0.49	-2.7
2,094,715	-		GFF2057	0.49	-2.3
2,094,715	-		GFF2057	0.49	-3.1
2,094,715	-		GFF2057	0.49	-2.2
2,094,720	-		GFF2057	0.50	-1.5
2,094,720	-		GFF2057	0.50	-1.9
2,094,720	-		GFF2057	0.50	-0.2
2,094,720	-		GFF2057	0.50	-0.2
2,094,720	-		GFF2057	0.50	-0.9
2,094,720	-		GFF2057	0.50	-1.3
2,094,720	-		GFF2057	0.50	-3.4
2,094,720	-		GFF2057	0.50	-1.9
2,094,720	-		GFF2057	0.50	-1.9
2,094,720	-		GFF2057	0.50	-3.4
2,094,720	-		GFF2057	0.50	-0.6
2,094,749	-		GFF2057	0.52	-2.1
2,094,805	-		GFF2057	0.58	-2.9
2,094,809	-		GFF2057	0.58	-0.4
2,094,832	+		GFF2057	0.60	-0.6
2,094,832	+		GFF2057	0.60	-2.9
2,094,840	-		GFF2057	0.61	-1.7
2,094,840	-		GFF2057	0.61	-1.7
2,094,840	-		GFF2057	0.61	-1.9
2,094,840	-		GFF2057	0.61	-1.8
2,094,840	-		GFF2057	0.61	-2.5
2,094,846	-		GFF2057	0.62	-2.8
2,094,851	+		GFF2057	0.62	-1.6
2,094,955	+		GFF2057	0.73	-1.0
2,094,965	+		GFF2057	0.74	-1.0
2,094,965	+		GFF2057	0.74	-2.5
2,094,973	-		GFF2057	0.74	-0.2
2,094,973	-		GFF2057	0.74	-3.1
2,094,973	-		GFF2057	0.74	-1.8
2,094,983	-		GFF2057	0.75	-0.9
2,095,000	-		GFF2057	0.77	-2.1
2,095,091	+		GFF2057	0.86	-3.2
2,095,099	-		GFF2057	0.87	-0.2
2,095,111	+		GFF2057	0.88	-3.0
2,095,117	+		GFF2057	0.88	-1.1
2,095,119	-		GFF2057	0.89	-3.1