Strain Fitness in Sphingobium sp. HT1-2 around GFF1934

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,957,353	+		GFF1932	0.71	-0.5
1,957,356	+		GFF1932	0.72	+0.7
1,957,356	+		GFF1932	0.72	-0.2
1,957,356	+		GFF1932	0.72	+1.6
1,957,361	-		GFF1932	0.72	-0.4
1,957,361	-		GFF1932	0.72	-0.8
1,957,361	-		GFF1932	0.72	+1.0
1,957,363	+		GFF1932	0.72	+0.2
1,957,371	-		GFF1932	0.72	+0.2
1,957,371	-		GFF1932	0.72	+1.3
1,957,371	-		GFF1932	0.72	-1.2
1,957,386	+		GFF1932	0.73	+0.3
1,957,386	+		GFF1932	0.73	-2.4
1,957,413	-		GFF1932	0.74	-0.6
1,957,413	-		GFF1932	0.74	-0.1
1,957,431	-		GFF1932	0.75	+0.2
1,957,520	-		GFF1932	0.79	+1.3
1,957,544	+		GFF1932	0.80	-2.3
1,957,550	-		GFF1932	0.80	-0.4
1,957,552	-		GFF1932	0.80	+0.6
1,957,571	+		GFF1932	0.81	-1.2
1,957,571	+		GFF1932	0.81	-1.2
1,957,571	+		GFF1932	0.81	+0.3
1,957,571	+		GFF1932	0.81	-0.0
1,957,579	-		GFF1932	0.81	-1.1
1,957,579	-		GFF1932	0.81	+0.1
1,957,581	+		GFF1932	0.81	+0.2
1,957,581	+		GFF1932	0.81	+0.3
1,957,581	+		GFF1932	0.81	-0.3
1,957,581	-		GFF1932	0.81	-0.4
1,957,586	+		GFF1932	0.81	+0.1
1,957,586	+		GFF1932	0.81	+0.8
1,957,589	-		GFF1932	0.82	-1.4
1,957,589	-		GFF1932	0.82	+0.5
1,957,591	+		GFF1932	0.82	-1.4
1,957,599	-		GFF1932	0.82	-1.1
1,957,599	-		GFF1932	0.82	+0.7
1,957,610	-		GFF1932	0.82	-0.7
1,957,610	-		GFF1932	0.82	+0.0
1,957,610	-		GFF1932	0.82	-0.1
1,957,611	+		GFF1932	0.83	+1.0
1,957,611	+		GFF1932	0.83	+0.5
1,957,615	+		GFF1932	0.83	-0.8
1,957,636	+		GFF1932	0.84	+0.7
1,957,636	+		GFF1932	0.84	-0.4
1,957,636	+		GFF1932	0.84	+1.4
1,957,636	+		GFF1932	0.84	-0.0
1,957,636	+		GFF1932	0.84	-0.7
1,957,636	+		GFF1932	0.84	+0.6
1,957,636	+		GFF1932	0.84	-0.1
1,957,636	+		GFF1932	0.84	-2.2
1,957,636	+		GFF1932	0.84	+1.6
1,957,636	+		GFF1932	0.84	-0.5
1,957,636	+		GFF1932	0.84	-0.5
1,957,636	+		GFF1932	0.84	-0.4
1,957,636	+		GFF1932	0.84	+0.2
1,957,636	+		GFF1932	0.84	+0.2
1,957,636	+		GFF1932	0.84	-0.8
1,957,636	+		GFF1932	0.84	-1.0
1,957,636	+		GFF1932	0.84	+0.4
1,957,636	+		GFF1932	0.84	+0.2
1,957,636	+		GFF1932	0.84	-0.0
1,957,642	+		GFF1932	0.84	+0.8
1,957,644	-		GFF1932	0.84	-0.0
1,957,644	-		GFF1932	0.84	-1.4
1,957,644	-		GFF1932	0.84	+0.0
1,957,644	-		GFF1932	0.84	-0.7
1,957,644	-		GFF1932	0.84	-0.3
1,957,644	-		GFF1932	0.84	-1.2
1,957,644	-		GFF1932	0.84	+1.0
1,957,644	-		GFF1932	0.84	+0.8
1,957,644	-		GFF1932	0.84	-0.6
1,957,644	-		GFF1932	0.84	-0.4
1,957,644	-		GFF1932	0.84	+0.0
1,957,644	-		GFF1932	0.84	-0.7
1,957,644	-		GFF1932	0.84	-0.6
1,957,644	-		GFF1932	0.84	+0.2
1,957,644	-		GFF1932	0.84	-1.1
1,957,644	-		GFF1932	0.84	-1.1
1,957,644	-		GFF1932	0.84	+0.1
1,957,644	-		GFF1932	0.84	+0.3
1,957,644	-		GFF1932	0.84	-0.6
1,957,644	-		GFF1932	0.84	-0.4
1,957,644	-		GFF1932	0.84	+0.4
1,957,644	-		GFF1932	0.84	+0.5
1,957,647	+		GFF1932	0.84	+1.8
1,957,650	-		GFF1932	0.84	-0.3
1,957,685	+		GFF1932	0.86	-0.7
1,957,708	-		GFF1932	0.87	+0.4
1,957,717	-		GFF1932	0.87	-0.2
1,957,717	-		GFF1932	0.87	-2.1
1,957,717	-		GFF1932	0.87	+0.5
1,957,725	-		GFF1932	0.87	+0.6
1,957,725	-		GFF1932	0.87	-0.4
1,957,738	-		GFF1932	0.88	-0.2
1,957,748	-		GFF1932	0.88	-1.7
1,957,748	-		GFF1932	0.88	-0.8
1,957,764	+		GFF1932	0.89	-0.8
1,957,764	+		GFF1932	0.89	-1.1
1,957,772	-		GFF1932	0.89	+0.7
1,957,774	-		GFF1932	0.90	-0.2
1,957,775	+		GFF1932	0.90	-2.3
1,957,781	+		GFF1932	0.90	-1.3
1,957,781	+		GFF1932	0.90	-0.1
1,957,787	+				-0.1
1,957,789	-				+0.5
1,957,789	-				-1.0
1,957,789	-				-0.1
1,957,795	-				+0.7
1,957,826	+				+0.2
1,957,826	+				+0.4
1,957,831	+				-0.6
1,957,834	-				-3.2
1,957,839	-				-0.4
1,957,843	+				+0.5
1,957,857	+				-1.1
1,957,857	+				+0.2
1,957,862	+				+0.3
1,957,893	+				+0.7
1,957,930	+				-0.6
1,957,938	-				-1.1
1,957,938	-				-0.7
1,957,938	-				-1.6
1,957,938	-				+0.5
1,957,938	-				-0.1
1,957,940	+				-1.1
1,957,940	+				-1.1
1,957,943	-				+0.7
1,957,945	+				-0.8
1,957,945	+				+1.5
1,957,953	-				-1.3
1,957,960	+				-0.2
1,957,967	-				-0.1
1,957,967	-				-0.8
1,957,974	+				-0.8
1,957,974	+				-0.5
1,957,974	+				+1.0
1,957,981	+				-1.5
1,957,982	-				-0.3
1,957,982	-				-1.2
1,958,001	-				-0.5
1,958,046	-		GFF1933	0.25	-1.5
1,958,064	+		GFF1933	0.40	+0.1
1,958,064	+		GFF1933	0.40	-0.0
1,958,085	+		GFF1933	0.56	+0.1
1,958,093	-		GFF1933	0.63	-0.2
1,958,135	-				-0.0
1,958,155	+				-1.1
1,958,158	-				-0.1
1,958,163	-				+0.2
1,958,165	+				+0.1
1,958,165	+				-0.9
1,958,165	+				-1.0
1,958,165	-				+0.8
1,958,170	+				+0.6
1,958,173	-				+0.1
1,958,173	-				-0.2
1,958,173	-				-1.2
1,958,173	-				-0.4
1,958,173	-				-0.4
1,958,173	-				-0.9
1,958,173	-				-1.0
1,958,175	+				+1.0
1,958,184	-				-0.9
1,958,220	-				-0.5
1,958,222	+				-0.6
1,958,240	+				-1.6
1,958,245	+				+1.6
1,958,252	+				-0.1
1,958,289	-				+0.2
1,958,291	+				-0.5
1,958,292	+				-0.4
1,958,299	-				+0.4
1,958,309	-				-0.1
1,958,311	+				+0.2
1,958,311	+				-0.7
1,958,319	-				+1.3
1,958,319	-				-1.3
1,958,321	-				+0.5
1,958,323	-				+0.9
1,958,336	-				-1.7
1,958,339	-				-2.3
1,958,340	-				+0.2
1,958,340	-				-0.2
1,958,340	-				+0.2
1,958,351	+				-0.9
1,958,351	+				-1.1
1,958,359	-				-1.4
1,958,359	-				+0.2
1,958,366	+				+0.3
1,958,366	+				-0.2
1,958,366	+				+0.0
1,958,366	+				+0.7
1,958,371	+				+0.4
1,958,371	+				-2.0
1,958,371	+				+0.3
1,958,374	-				-0.7
1,958,374	-				-1.0
1,958,374	-				-1.8
1,958,374	-				-1.0
1,958,374	-				-0.9
1,958,374	-				-2.0
1,958,376	+				+1.2
1,958,376	+				+0.1
1,958,385	+				-0.0
1,958,431	-				+0.8
1,958,437	-				+1.3
1,958,440	+				-1.5
1,958,441	+				-0.8
1,958,475	-		GFF1934	0.11	+0.5
1,958,478	-		GFF1934	0.11	-1.7
1,958,540	+		GFF1934	0.16	+0.2
1,958,548	-		GFF1934	0.17	+0.1
1,958,548	-		GFF1934	0.17	-0.3
1,958,559	+		GFF1934	0.18	+1.8
1,958,559	+		GFF1934	0.18	-1.6
1,958,572	+		GFF1934	0.19	-0.5
1,958,575	-		GFF1934	0.19	+0.3
1,958,575	-		GFF1934	0.19	+0.6
1,958,576	+		GFF1934	0.19	-0.8
1,958,642	-		GFF1934	0.25	+0.1
1,958,647	-		GFF1934	0.25	+0.3
1,958,649	+		GFF1934	0.25	+0.9
1,958,669	+		GFF1934	0.27	+0.9
1,958,669	+		GFF1934	0.27	-2.4
1,958,679	+		GFF1934	0.28	-0.1
1,958,684	+		GFF1934	0.28	-0.5
1,958,694	+		GFF1934	0.29	-2.2
1,958,729	-		GFF1934	0.32	-1.3
1,958,731	-		GFF1934	0.32	+0.6
1,958,739	+		GFF1934	0.32	+0.9
1,958,741	+		GFF1934	0.33	-0.0
1,958,749	-		GFF1934	0.33	-1.4
1,958,758	+		GFF1934	0.34	+0.2
1,958,777	+		GFF1934	0.35	-0.3
1,958,785	-		GFF1934	0.36	-1.8
1,958,785	-		GFF1934	0.36	-1.0
1,958,793	+		GFF1934	0.37	-0.5
1,958,820	-		GFF1934	0.39	-0.1
1,958,863	-		GFF1934	0.42	-0.1
1,958,918	-		GFF1934	0.47	+0.1
1,958,918	-		GFF1934	0.47	+0.4
1,958,918	-		GFF1934	0.47	-0.2
1,958,918	-		GFF1934	0.47	+0.0
1,958,918	-		GFF1934	0.47	-0.4
1,958,918	-		GFF1934	0.47	-1.1
1,958,923	-		GFF1934	0.47	-1.0
1,958,923	-		GFF1934	0.47	-0.1
1,958,923	-		GFF1934	0.47	+0.7
1,958,942	-		GFF1934	0.49	+0.6
1,958,953	-		GFF1934	0.50	+0.4
1,958,963	-		GFF1934	0.50	+0.2
1,958,980	+		GFF1934	0.52	-0.9
1,958,980	+		GFF1934	0.52	-1.1
1,958,980	+		GFF1934	0.52	-0.6
1,958,988	-		GFF1934	0.52	-0.8
1,958,988	-		GFF1934	0.52	+0.3
1,958,988	-		GFF1934	0.52	+1.3
1,958,998	-		GFF1934	0.53	+0.3
1,959,000	+		GFF1934	0.53	-0.2
1,959,022	-		GFF1934	0.55	+0.7
1,959,034	+		GFF1934	0.56	-0.3
1,959,042	+		GFF1934	0.57	-0.8
1,959,042	+		GFF1934	0.57	+0.6
1,959,042	+		GFF1934	0.57	-0.2
1,959,060	+		GFF1934	0.58	-1.8
1,959,068	-		GFF1934	0.59	-0.2
1,959,072	+		GFF1934	0.59	-0.8
1,959,072	+		GFF1934	0.59	-2.4
1,959,080	-		GFF1934	0.60	+0.5
1,959,080	-		GFF1934	0.60	-0.8
1,959,086	+		GFF1934	0.60	-3.5
1,959,099	-		GFF1934	0.61	+0.5
1,959,099	-		GFF1934	0.61	+0.5
1,959,116	+		GFF1934	0.63	-0.7
1,959,124	-		GFF1934	0.63	-0.5
1,959,150	-		GFF1934	0.65	+0.5
1,959,152	+		GFF1934	0.66	+0.6
1,959,170	+		GFF1934	0.67	-0.5
1,959,173	-		GFF1934	0.67	+0.2
1,959,178	-		GFF1934	0.68	-2.1
1,959,200	+		GFF1934	0.69	-0.5
1,959,200	+		GFF1934	0.69	+1.5
1,959,200	+		GFF1934	0.69	-1.8
1,959,208	+		GFF1934	0.70	+1.3
1,959,208	+		GFF1934	0.70	-0.8
1,959,208	+		GFF1934	0.70	-1.3
1,959,208	+		GFF1934	0.70	-0.4
1,959,208	-		GFF1934	0.70	+0.4
1,959,208	-		GFF1934	0.70	-0.6
1,959,208	-		GFF1934	0.70	-1.3
1,959,208	-		GFF1934	0.70	+0.1
1,959,210	-		GFF1934	0.70	-2.5
1,959,215	+		GFF1934	0.71	-0.0
1,959,215	+		GFF1934	0.71	+0.2
1,959,216	-		GFF1934	0.71	-0.7
1,959,223	-		GFF1934	0.71	-0.7
1,959,274	-		GFF1934	0.75	-1.0
1,959,287	-		GFF1934	0.76	+0.4
1,959,293	+		GFF1934	0.77	-1.1
1,959,297	-		GFF1934	0.77	-0.8
1,959,301	-		GFF1934	0.78	-1.3
1,959,301	-		GFF1934	0.78	+0.1
1,959,301	-		GFF1934	0.78	-0.8
1,959,306	+		GFF1934	0.78	+0.4
1,959,321	+		GFF1934	0.79	-2.0
1,959,329	+		GFF1934	0.80	-0.6
1,959,329	+		GFF1934	0.80	+0.2
1,959,329	+		GFF1934	0.80	-0.2
1,959,329	+		GFF1934	0.80	-1.2
1,959,329	+		GFF1934	0.80	-2.1
1,959,329	+		GFF1934	0.80	+0.7
1,959,329	+		GFF1934	0.80	-1.2
1,959,329	+		GFF1934	0.80	-0.0
1,959,329	+		GFF1934	0.80	-1.1
1,959,329	+		GFF1934	0.80	+0.6
1,959,329	+		GFF1934	0.80	+0.0
1,959,329	+		GFF1934	0.80	-0.8
1,959,333	+		GFF1934	0.80	+0.4
1,959,337	-		GFF1934	0.81	-1.8
1,959,337	-		GFF1934	0.81	-0.3
1,959,337	-		GFF1934	0.81	-0.1
1,959,337	-		GFF1934	0.81	-0.6
1,959,337	-		GFF1934	0.81	+0.6
1,959,337	-		GFF1934	0.81	-2.2
1,959,337	-		GFF1934	0.81	-1.7
1,959,337	-		GFF1934	0.81	+0.3
1,959,337	-		GFF1934	0.81	-3.7
1,959,337	-		GFF1934	0.81	-1.0
1,959,337	-		GFF1934	0.81	+0.2
1,959,337	-		GFF1934	0.81	-0.6
1,959,337	-		GFF1934	0.81	+0.0
1,959,337	-		GFF1934	0.81	-1.5
1,959,337	-		GFF1934	0.81	+0.7
1,959,337	-		GFF1934	0.81	+0.6
1,959,351	+		GFF1934	0.82	-0.1
1,959,351	+		GFF1934	0.82	+0.9
1,959,376	-		GFF1934	0.84	+0.5
1,959,378	+		GFF1934	0.84	+0.2
1,959,381	-		GFF1934	0.84	-0.8
1,959,388	+		GFF1934	0.85	+1.3
1,959,391	-		GFF1934	0.85	-0.6
1,959,391	-		GFF1934	0.85	-1.8
1,959,394	+		GFF1934	0.85	+0.0
1,959,399	+		GFF1934	0.86	-0.2
1,959,407	-		GFF1934	0.86	-1.5
1,959,418	-		GFF1934	0.87	+0.3
1,959,439	+		GFF1934	0.89	+0.2
1,959,454	-				+1.0
1,959,470	+				+1.2
1,959,470	-				-0.4
1,959,478	-				-1.1
1,959,481	+				-0.1
1,959,482	+				+0.8
1,959,489	-				+0.2
1,959,489	-				+0.4
1,959,489	-				+1.1
1,959,489	-				-0.6
1,959,516	-				+0.3
1,959,539	+				+1.0
1,959,601	+				-0.1
1,959,609	-				-0.4
1,959,629	+				-0.1
1,959,637	-				+0.2
1,959,643	+				+0.2
1,959,652	-				-0.3
1,959,661	-				-0.6
1,959,701	+				-0.4
1,959,701	+				-0.1
1,959,701	+				-1.6
1,959,709	-				-1.2
1,959,709	-				-0.4
1,959,720	+				-0.3
1,959,720	+				-1.6
1,959,724	+				-1.7
1,959,732	-				+0.7
1,959,732	-				-0.2
1,959,766	+				-0.8
1,959,772	-				-1.4
1,959,774	-				+0.2
1,959,809	+				-0.2
1,959,812	-				-0.1
1,959,817	-				+0.4
1,959,817	-				+0.1
1,959,845	-				+0.8
1,959,847	-				-0.4
1,959,874	+				-0.1
1,959,893	+				-0.1
1,959,893	+				+1.9
1,959,893	+				+0.2
1,959,901	-				+0.4
1,959,901	-				-0.3
1,959,945	+				+1.0
1,959,946	-				-0.4
1,959,959	-				-0.4
1,959,966	+				-0.1
1,959,966	+				-3.2
1,959,974	-		GFF1935	0.10	-0.1
1,959,974	-		GFF1935	0.10	-0.3
1,959,974	-		GFF1935	0.10	-1.6
1,959,975	+		GFF1935	0.10	-0.4
1,959,988	-		GFF1935	0.12	+0.6
1,960,008	+		GFF1935	0.14	-1.8
1,960,008	+		GFF1935	0.14	+0.7
1,960,013	+		GFF1935	0.15	-0.0
1,960,013	+		GFF1935	0.15	+0.7
1,960,031	+		GFF1935	0.17	+0.1
1,960,039	-		GFF1935	0.18	+0.1
1,960,107	+		GFF1935	0.25	+0.8
1,960,115	-		GFF1935	0.26	+0.6
1,960,115	-		GFF1935	0.26	-1.3
1,960,116	-		GFF1935	0.27	-0.4
1,960,132	+		GFF1935	0.28	+0.3
1,960,132	+		GFF1935	0.28	+0.7
1,960,134	+		GFF1935	0.29	-0.2
1,960,140	-		GFF1935	0.29	-0.6
1,960,140	-		GFF1935	0.29	-0.6
1,960,140	-		GFF1935	0.29	-1.6
1,960,140	-		GFF1935	0.29	+1.0
1,960,140	-		GFF1935	0.29	-1.7
1,960,140	-		GFF1935	0.29	-1.9
1,960,140	-		GFF1935	0.29	-1.1
1,960,140	-		GFF1935	0.29	-0.0
1,960,142	+		GFF1935	0.29	-0.4
1,960,150	+		GFF1935	0.30	-1.1
1,960,150	-		GFF1935	0.30	+0.8
1,960,193	-		GFF1935	0.35	-0.1
1,960,193	-		GFF1935	0.35	-0.5
1,960,254	-		GFF1935	0.42	+0.7
1,960,261	+		GFF1935	0.43	-2.2
1,960,269	-		GFF1935	0.44	-0.7
1,960,269	-		GFF1935	0.44	-1.6
1,960,269	-		GFF1935	0.44	-0.8
1,960,269	-		GFF1935	0.44	-1.4
1,960,280	-		GFF1935	0.45	+1.0
1,960,291	+		GFF1935	0.46	-0.0
1,960,304	+		GFF1935	0.48	-0.9
1,960,317	-		GFF1935	0.49	-1.2
1,960,322	+		GFF1935	0.50	+0.8
1,960,340	-		GFF1935	0.52	+0.1
1,960,340	-		GFF1935	0.52	-0.3
1,960,347	-		GFF1935	0.53	+0.8
1,960,347	-		GFF1935	0.53	+0.3
1,960,374	+		GFF1935	0.56	-2.2
1,960,374	+		GFF1935	0.56	-0.3
1,960,374	+		GFF1935	0.56	-0.5
1,960,382	-		GFF1935	0.57	-0.4
1,960,382	-		GFF1935	0.57	-0.4
1,960,382	-		GFF1935	0.57	-1.4
1,960,382	-		GFF1935	0.57	-1.2
1,960,382	-		GFF1935	0.57	-0.3
1,960,385	+		GFF1935	0.57	-1.8
1,960,387	+		GFF1935	0.57	+0.1
1,960,387	-		GFF1935	0.57	-0.3
1,960,387	-		GFF1935	0.57	-1.2
1,960,393	-		GFF1935	0.58	+1.4
1,960,395	-		GFF1935	0.58	-0.4
1,960,395	-		GFF1935	0.58	+0.6
1,960,395	-		GFF1935	0.58	-0.9
1,960,405	-		GFF1935	0.59	-0.6
1,960,422	-		GFF1935	0.61	+1.0
1,960,422	-		GFF1935	0.61	-0.2
1,960,430	+		GFF1935	0.62	+0.8
1,960,435	+		GFF1935	0.63	-0.6
1,960,442	-		GFF1935	0.64	-0.0
1,960,442	-		GFF1935	0.64	-0.4
1,960,450	-		GFF1935	0.65	+0.2
1,960,455	-		GFF1935	0.65	-0.1
1,960,456	+		GFF1935	0.65	-1.7
1,960,459	+		GFF1935	0.66	+1.0
1,960,468	-		GFF1935	0.67	-0.3
1,960,477	-		GFF1935	0.68	+0.9
1,960,478	-		GFF1935	0.68	-0.9
1,960,478	-		GFF1935	0.68	+0.4
1,960,482	+		GFF1935	0.68	-1.3
1,960,482	+		GFF1935	0.68	+1.8
1,960,482	+		GFF1935	0.68	+0.8
1,960,482	+		GFF1935	0.68	+1.4
1,960,487	+		GFF1935	0.69	-0.1
1,960,487	+		GFF1935	0.69	-1.0
1,960,487	+		GFF1935	0.69	-0.1
1,960,490	-		GFF1935	0.69	-0.3
1,960,490	-		GFF1935	0.69	-1.2
1,960,495	+		GFF1935	0.70	-0.8
1,960,495	-		GFF1935	0.70	-0.1
1,960,495	-		GFF1935	0.70	+0.3
1,960,495	-		GFF1935	0.70	-0.4
1,960,495	-		GFF1935	0.70	+0.1
1,960,503	-		GFF1935	0.71	-0.1
1,960,523	-		GFF1935	0.73	-1.9
1,960,523	-		GFF1935	0.73	-0.3
1,960,568	+		GFF1935	0.78	+1.1
1,960,568	+		GFF1935	0.78	+0.5
1,960,568	+		GFF1935	0.78	+0.7
1,960,568	+		GFF1935	0.78	-1.6
1,960,576	-		GFF1935	0.79	-0.2
1,960,576	-		GFF1935	0.79	-0.4
1,960,576	-		GFF1935	0.79	-2.3