Strain Fitness in Sphingobium sp. HT1-2 around GFF1925

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,949,062	+		GFF1923	0.84	-1.3
1,949,070	-		GFF1923	0.85	-0.5
1,949,072	+		GFF1923	0.85	-1.9
1,949,079	+		GFF1923	0.85	-0.7
1,949,080	-		GFF1923	0.85	-2.5
1,949,102	-		GFF1923	0.87	-0.9
1,949,113	+		GFF1923	0.88	-2.0
1,949,121	-		GFF1923	0.89	-1.0
1,949,129	+		GFF1923	0.90	-0.2
1,949,129	+		GFF1923	0.90	-2.8
1,949,137	-				-0.6
1,949,155	-				-2.0
1,949,164	+				+0.8
1,949,166	-				+1.0
1,949,183	-				+1.0
1,949,197	+				-0.5
1,949,205	-				-0.6
1,949,213	-				-0.1
1,949,213	-				+0.5
1,949,242	-				-1.3
1,949,253	-				-1.3
1,949,284	+				-2.6
1,949,309	+				-0.5
1,949,309	+				-1.6
1,949,335	-				+1.4
1,949,340	+				+0.6
1,949,341	-				+1.0
1,949,347	+				-0.3
1,949,347	+				-0.0
1,949,355	-				+0.8
1,949,355	-				+0.5
1,949,355	-				-0.3
1,949,355	-				+0.6
1,949,368	-				-0.3
1,949,368	-				-0.7
1,949,374	+				+0.5
1,949,374	+				-1.3
1,949,382	-				-0.3
1,949,382	-				-0.0
1,949,440	+				-1.0
1,949,440	+				-1.5
1,949,440	+				+0.6
1,949,440	+				-1.0
1,949,440	+				+1.3
1,949,440	+				-0.0
1,949,440	+				-0.3
1,949,440	+				+0.1
1,949,440	+				-0.8
1,949,440	+				-0.2
1,949,441	-				+0.4
1,949,448	-				-0.2
1,949,448	-				-0.0
1,949,448	-				-0.5
1,949,448	-				-0.2
1,949,448	-				+0.8
1,949,448	-				-1.8
1,949,448	-				-0.1
1,949,485	+				+0.2
1,949,485	+				-0.5
1,949,485	+				-0.3
1,949,493	-				+0.1
1,949,493	-				+1.2
1,949,493	-				+0.2
1,949,493	-				-0.6
1,949,493	-				-0.3
1,949,509	-				+0.3
1,949,511	+				+0.2
1,949,513	+				-0.4
1,949,519	-				+0.6
1,949,530	+				-0.3
1,949,530	+				-1.4
1,949,535	+				-0.5
1,949,569	-				+1.6
1,949,632	-				+0.4
1,949,659	+		GFF1924	0.12	+1.3
1,949,662	-		GFF1924	0.13	+0.2
1,949,667	-		GFF1924	0.14	+0.6
1,949,716	+		GFF1924	0.32	+0.8
1,949,723	-		GFF1924	0.34	+0.2
1,949,723	-		GFF1924	0.34	-0.6
1,949,729	+		GFF1924	0.36	+0.3
1,949,749	-		GFF1924	0.43	-0.3
1,949,777	+		GFF1924	0.53	-1.0
1,949,777	+		GFF1924	0.53	-0.3
1,949,779	+		GFF1924	0.54	+1.1
1,949,781	-		GFF1924	0.54	-0.0
1,949,785	+		GFF1924	0.56	+0.8
1,949,785	+		GFF1924	0.56	-1.2
1,949,785	-		GFF1924	0.56	-1.4
1,949,798	+		GFF1924	0.60	-0.5
1,949,802	+		GFF1924	0.62	+0.7
1,949,802	+		GFF1924	0.62	+0.6
1,949,802	+		GFF1924	0.62	+1.5
1,949,808	+		GFF1924	0.64	+0.7
1,949,810	-		GFF1924	0.65	-0.2
1,949,810	-		GFF1924	0.65	-0.1
1,949,810	-		GFF1924	0.65	-1.3
1,949,810	-		GFF1924	0.65	+0.9
1,949,810	-		GFF1924	0.65	-1.6
1,949,822	+		GFF1924	0.69	+0.1
1,949,822	+		GFF1924	0.69	-0.6
1,949,822	+		GFF1924	0.69	+0.1
1,949,822	+		GFF1924	0.69	-0.5
1,949,822	+		GFF1924	0.69	+0.0
1,949,822	+		GFF1924	0.69	+0.0
1,949,822	+		GFF1924	0.69	-0.0
1,949,822	+		GFF1924	0.69	+0.5
1,949,822	+		GFF1924	0.69	-1.4
1,949,822	+		GFF1924	0.69	-1.8
1,949,822	+		GFF1924	0.69	+0.1
1,949,822	+		GFF1924	0.69	+0.3
1,949,822	+		GFF1924	0.69	-1.0
1,949,822	+		GFF1924	0.69	+0.4
1,949,822	+		GFF1924	0.69	-1.6
1,949,822	+		GFF1924	0.69	+0.6
1,949,822	+		GFF1924	0.69	-1.0
1,949,822	+		GFF1924	0.69	-1.7
1,949,822	+		GFF1924	0.69	+1.0
1,949,822	+		GFF1924	0.69	+0.5
1,949,822	+		GFF1924	0.69	-0.6
1,949,822	+		GFF1924	0.69	-0.4
1,949,822	+		GFF1924	0.69	-1.2
1,949,825	-		GFF1924	0.70	-0.2
1,949,830	-		GFF1924	0.72	-1.5
1,949,830	-		GFF1924	0.72	-0.4
1,949,830	-		GFF1924	0.72	-0.4
1,949,830	-		GFF1924	0.72	+1.0
1,949,830	-		GFF1924	0.72	+1.3
1,949,830	-		GFF1924	0.72	+1.0
1,949,830	-		GFF1924	0.72	+0.5
1,949,830	-		GFF1924	0.72	+0.5
1,949,830	-		GFF1924	0.72	-1.7
1,949,830	-		GFF1924	0.72	-0.9
1,949,830	-		GFF1924	0.72	-0.8
1,949,830	-		GFF1924	0.72	-0.1
1,949,830	-		GFF1924	0.72	-0.1
1,949,830	-		GFF1924	0.72	+0.5
1,949,830	-		GFF1924	0.72	-0.2
1,949,830	-		GFF1924	0.72	+0.1
1,949,830	-		GFF1924	0.72	-0.4
1,949,830	-		GFF1924	0.72	+1.0
1,949,830	-		GFF1924	0.72	+1.3
1,949,830	-		GFF1924	0.72	+0.1
1,949,830	-		GFF1924	0.72	-0.0
1,949,830	-		GFF1924	0.72	+0.3
1,949,830	-		GFF1924	0.72	+0.0
1,949,830	-		GFF1924	0.72	-1.2
1,949,830	-		GFF1924	0.72	-0.5
1,949,830	-		GFF1924	0.72	+0.0
1,949,830	-		GFF1924	0.72	-1.4
1,949,830	-		GFF1924	0.72	-0.2
1,949,830	-		GFF1924	0.72	+0.0
1,949,830	-		GFF1924	0.72	+0.6
1,949,830	-		GFF1924	0.72	+0.6
1,949,830	-		GFF1924	0.72	-0.5
1,949,830	-		GFF1924	0.72	+1.1
1,949,830	-		GFF1924	0.72	-0.2
1,949,830	-		GFF1924	0.72	+0.5
1,949,830	-		GFF1924	0.72	-0.8
1,949,835	-		GFF1924	0.73	-0.1
1,949,839	-		GFF1924	0.75	+0.9
1,949,843	+		GFF1924	0.76	-0.0
1,949,864	+		GFF1924	0.84	-0.5
1,949,890	+				+0.5
1,949,906	+				-0.0
1,949,906	+				-0.4
1,949,906	+				+0.7
1,949,906	+				+0.3
1,949,906	+				-0.2
1,949,914	-				+1.6
1,949,914	-				-0.1
1,949,914	-				+0.0
1,949,914	-				-0.0
1,949,914	-				-0.7
1,949,919	-				-1.1
1,949,928	-				-1.1
1,949,928	-				-0.7
1,949,928	-				-1.4
1,949,928	-				+0.3
1,949,928	-				-2.1
1,949,928	-				+1.2
1,949,928	-				+0.8
1,949,928	-				-0.3
1,949,945	-				+0.7
1,949,954	-				+0.7
1,949,957	+				+1.3
1,949,967	+				-0.2
1,949,984	+				-0.7
1,949,986	-				+1.7
1,949,987	+				+0.6
1,950,000	-				+0.3
1,950,021	-				-0.3
1,950,031	+				+0.6
1,950,038	+				-0.1
1,950,039	-				-1.0
1,950,044	-				-0.7
1,950,046	-				-2.3
1,950,054	-				+0.2
1,950,064	-				-0.0
1,950,134	+		GFF1925	0.14	-1.0
1,950,134	+		GFF1925	0.14	+0.4
1,950,136	+		GFF1925	0.14	+0.2
1,950,136	+		GFF1925	0.14	+0.2
1,950,142	-		GFF1925	0.15	+1.9
1,950,151	+		GFF1925	0.16	+1.1
1,950,156	+		GFF1925	0.17	+0.7
1,950,159	-		GFF1925	0.17	-1.0
1,950,164	+		GFF1925	0.18	-0.4
1,950,164	+		GFF1925	0.18	-0.8
1,950,164	+		GFF1925	0.18	-0.0
1,950,166	+		GFF1925	0.18	+0.4
1,950,166	+		GFF1925	0.18	+0.0
1,950,174	-		GFF1925	0.20	-1.6
1,950,174	-		GFF1925	0.20	+0.9
1,950,174	-		GFF1925	0.20	+0.3
1,950,185	+		GFF1925	0.21	+1.5
1,950,190	+		GFF1925	0.22	+0.7
1,950,211	-		GFF1925	0.25	+0.4
1,950,211	-		GFF1925	0.25	+0.0
1,950,220	+		GFF1925	0.26	-0.9
1,950,223	-		GFF1925	0.27	+0.0
1,950,223	-		GFF1925	0.27	-0.1
1,950,224	+		GFF1925	0.27	-1.4
1,950,224	+		GFF1925	0.27	-0.9
1,950,245	+		GFF1925	0.30	-0.1
1,950,270	+		GFF1925	0.34	-0.6
1,950,284	+		GFF1925	0.36	+0.2
1,950,287	+		GFF1925	0.36	-0.8
1,950,287	+		GFF1925	0.36	-0.1
1,950,300	+		GFF1925	0.38	-0.4
1,950,300	-		GFF1925	0.38	-1.6
1,950,300	-		GFF1925	0.38	-0.6
1,950,318	-		GFF1925	0.41	+0.8
1,950,321	+		GFF1925	0.41	+0.8
1,950,328	+		GFF1925	0.42	-0.0
1,950,328	+		GFF1925	0.42	+0.1
1,950,328	+		GFF1925	0.42	-1.1
1,950,328	+		GFF1925	0.42	-2.2
1,950,336	-		GFF1925	0.44	-2.3
1,950,341	-		GFF1925	0.44	+0.2
1,950,344	-		GFF1925	0.45	-0.8
1,950,353	+		GFF1925	0.46	+0.5
1,950,355	-		GFF1925	0.46	-1.0
1,950,356	+		GFF1925	0.46	-0.1
1,950,381	+		GFF1925	0.50	+1.4
1,950,436	+		GFF1925	0.58	-1.6
1,950,436	+		GFF1925	0.58	-2.0
1,950,436	+		GFF1925	0.58	-1.0
1,950,436	+		GFF1925	0.58	-0.5
1,950,436	+		GFF1925	0.58	+0.1
1,950,436	+		GFF1925	0.58	-1.0
1,950,436	+		GFF1925	0.58	+0.2
1,950,436	+		GFF1925	0.58	-1.6
1,950,436	+		GFF1925	0.58	-0.2
1,950,436	+		GFF1925	0.58	-0.9
1,950,439	-		GFF1925	0.59	+0.2
1,950,444	-		GFF1925	0.59	-1.0
1,950,444	-		GFF1925	0.59	-0.2
1,950,444	-		GFF1925	0.59	-1.6
1,950,444	-		GFF1925	0.59	+0.3
1,950,444	-		GFF1925	0.59	-1.2
1,950,444	-		GFF1925	0.59	+0.2
1,950,449	-		GFF1925	0.60	-1.2
1,950,484	+		GFF1925	0.65	-0.3
1,950,499	-		GFF1925	0.68	-0.2
1,950,504	-		GFF1925	0.68	-1.3
1,950,518	+		GFF1925	0.70	+0.0
1,950,526	-		GFF1925	0.72	+0.6
1,950,526	-		GFF1925	0.72	+0.3
1,950,526	-		GFF1925	0.72	+0.0
1,950,536	-		GFF1925	0.73	-0.7
1,950,538	+		GFF1925	0.73	+1.6
1,950,541	+		GFF1925	0.74	+0.5
1,950,549	-		GFF1925	0.75	-1.0
1,950,549	-		GFF1925	0.75	-0.5
1,950,549	-		GFF1925	0.75	+0.2
1,950,549	-		GFF1925	0.75	-0.8
1,950,549	-		GFF1925	0.75	+0.7
1,950,549	-		GFF1925	0.75	-1.6
1,950,549	-		GFF1925	0.75	-1.0
1,950,550	+		GFF1925	0.75	-0.6
1,950,559	-		GFF1925	0.76	-0.5
1,950,566	+		GFF1925	0.77	-1.6
1,950,574	-		GFF1925	0.79	-0.8
1,950,574	-		GFF1925	0.79	+0.2
1,950,597	+		GFF1925	0.82	-0.4
1,950,605	-		GFF1925	0.83	+1.5
1,950,605	-		GFF1925	0.83	-0.5
1,950,605	-		GFF1925	0.83	-1.2
1,950,606	-		GFF1925	0.83	+1.1
1,950,614	-		GFF1925	0.85	+0.7
1,950,652	+				-0.9
1,950,707	+				+0.4
1,950,707	+				+0.6
1,950,726	+				+0.0
1,950,726	+				-2.4
1,950,726	+				-0.4
1,950,726	+				-0.5
1,950,726	+				-0.2
1,950,726	+				-1.4
1,950,726	+				-0.2
1,950,734	-				+1.1
1,950,734	-				-0.4
1,950,734	-				-0.8
1,950,734	-				+0.3
1,950,734	-				-0.8
1,950,742	-				-0.8
1,950,749	-				-0.3
1,950,772	+				+0.3
1,950,778	-				+0.4
1,950,779	-				+0.1
1,950,782	-				+1.0
1,950,796	+				-0.1
1,950,796	+				+1.7
1,950,796	+				-0.5
1,950,801	+				-1.0
1,950,801	+				+0.6
1,950,801	+				+0.2
1,950,801	+				-1.0
1,950,801	+				+0.4
1,950,801	+				-0.1
1,950,801	+				-0.3
1,950,801	+				+0.9
1,950,804	-				-0.6
1,950,805	+				+0.5
1,950,809	-				-1.6
1,950,809	-				-0.4
1,950,809	-				+0.3
1,950,809	-				-0.9
1,950,809	-				+0.0
1,950,809	-				-0.1
1,950,827	+				+0.7
1,950,832	+				-1.0
1,950,875	+				-0.3
1,950,875	+				-1.2
1,950,876	+				+0.4
1,950,876	+				+1.4
1,950,876	+				-0.5
1,950,883	-				-1.9
1,950,884	-				-0.6
1,950,884	-				+0.5
1,950,884	-				-1.4
1,950,884	-				-0.7
1,950,911	+				+0.3
1,950,951	-		GFF1926	0.11	-1.3
1,950,969	-		GFF1926	0.12	+1.7
1,951,019	+		GFF1926	0.16	+0.5
1,951,019	+		GFF1926	0.16	-1.5
1,951,024	+		GFF1926	0.16	-1.2
1,951,027	-		GFF1926	0.17	-0.5
1,951,056	-		GFF1926	0.19	-0.4
1,951,079	+		GFF1926	0.20	-1.9
1,951,079	+		GFF1926	0.20	-0.0
1,951,085	+		GFF1926	0.21	+0.7
1,951,093	-		GFF1926	0.22	-0.2
1,951,108	+		GFF1926	0.23	+0.8
1,951,108	-		GFF1926	0.23	-1.8
1,951,108	-		GFF1926	0.23	+0.9
1,951,140	+		GFF1926	0.25	+0.0
1,951,145	-		GFF1926	0.25	-1.7
1,951,172	-		GFF1926	0.27	+0.6
1,951,177	-		GFF1926	0.28	-0.4
1,951,182	-		GFF1926	0.28	+1.0
1,951,218	-		GFF1926	0.31	-0.2
1,951,219	-		GFF1926	0.31	+0.8
1,951,242	+		GFF1926	0.33	+1.3
1,951,249	-		GFF1926	0.33	-1.7
1,951,289	+		GFF1926	0.36	+0.2
1,951,290	+		GFF1926	0.36	-0.7
1,951,298	-		GFF1926	0.37	-1.9
1,951,298	-		GFF1926	0.37	+0.7
1,951,322	-		GFF1926	0.39	+0.2
1,951,327	-		GFF1926	0.39	-0.8
1,951,330	+		GFF1926	0.39	-0.4
1,951,348	+		GFF1926	0.40	-1.0
1,951,348	+		GFF1926	0.40	-1.9
1,951,356	-		GFF1926	0.41	-0.1
1,951,356	-		GFF1926	0.41	-2.2
1,951,392	+		GFF1926	0.44	+0.2
1,951,400	-		GFF1926	0.44	-0.7
1,951,402	+		GFF1926	0.44	+0.4
1,951,402	+		GFF1926	0.44	+0.3
1,951,402	+		GFF1926	0.44	-0.0
1,951,405	-		GFF1926	0.45	-0.6
1,951,405	-		GFF1926	0.45	+0.1
1,951,469	-		GFF1926	0.49	-0.0
1,951,476	+		GFF1926	0.50	+1.0
1,951,479	-		GFF1926	0.50	-0.6
1,951,484	-		GFF1926	0.51	+0.1
1,951,484	-		GFF1926	0.51	-0.4
1,951,484	-		GFF1926	0.51	+0.2
1,951,507	+		GFF1926	0.52	+0.1
1,951,507	+		GFF1926	0.52	-2.4
1,951,510	-		GFF1926	0.52	+0.3
1,951,510	-		GFF1926	0.52	-1.2
1,951,510	-		GFF1926	0.52	-0.7
1,951,515	-		GFF1926	0.53	+0.6
1,951,515	-		GFF1926	0.53	-1.4
1,951,532	+		GFF1926	0.54	-1.5
1,951,532	+		GFF1926	0.54	-1.9
1,951,532	+		GFF1926	0.54	-0.9
1,951,532	-		GFF1926	0.54	-0.5
1,951,540	-		GFF1926	0.55	+1.0
1,951,540	-		GFF1926	0.55	+0.3
1,951,544	-		GFF1926	0.55	-0.3
1,951,582	-		GFF1926	0.58	-0.4
1,951,591	+		GFF1926	0.59	-0.8
1,951,591	+		GFF1926	0.59	-1.2
1,951,591	+		GFF1926	0.59	-1.7
1,951,591	+		GFF1926	0.59	-1.0
1,951,593	-		GFF1926	0.59	-0.1
1,951,599	-		GFF1926	0.59	+1.2
1,951,603	+		GFF1926	0.59	-2.2
1,951,618	+		GFF1926	0.61	+0.7
1,951,618	+		GFF1926	0.61	-1.4
1,951,623	-		GFF1926	0.61	+0.4
1,951,623	-		GFF1926	0.61	-0.4
1,951,631	-		GFF1926	0.61	-0.8
1,951,633	+		GFF1926	0.62	-1.2
1,951,649	-		GFF1926	0.63	+0.0
1,951,651	+		GFF1926	0.63	-0.9
1,951,675	+		GFF1926	0.65	-0.4
1,951,675	+		GFF1926	0.65	-0.4
1,951,693	+		GFF1926	0.66	-0.4
1,951,693	+		GFF1926	0.66	+1.2
1,951,698	+		GFF1926	0.66	-0.7
1,951,698	+		GFF1926	0.66	-2.0
1,951,698	+		GFF1926	0.66	-0.0
1,951,699	+		GFF1926	0.67	+0.5
1,951,701	-		GFF1926	0.67	+0.7
1,951,701	-		GFF1926	0.67	-0.9
1,951,701	-		GFF1926	0.67	-0.5
1,951,706	-		GFF1926	0.67	-1.7
1,951,706	-		GFF1926	0.67	+0.5
1,951,706	-		GFF1926	0.67	-1.8
1,951,706	-		GFF1926	0.67	-0.5
1,951,706	-		GFF1926	0.67	-1.4
1,951,706	-		GFF1926	0.67	-0.3
1,951,706	-		GFF1926	0.67	+0.3
1,951,706	-		GFF1926	0.67	-1.8
1,951,706	-		GFF1926	0.67	+1.5
1,951,706	-		GFF1926	0.67	+0.4
1,951,706	-		GFF1926	0.67	-0.2