Strain Fitness in Sphingobium sp. HT1-2 around GFF1921

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,945,225	+		GFF1920	0.38	-0.6
1,945,227	+		GFF1920	0.38	-2.1
1,945,235	-		GFF1920	0.38	-0.5
1,945,235	-		GFF1920	0.38	-1.1
1,945,242	+		GFF1920	0.39	-0.3
1,945,252	-		GFF1920	0.40	-0.9
1,945,268	-		GFF1920	0.41	-0.6
1,945,312	+		GFF1920	0.43	-0.5
1,945,312	+		GFF1920	0.43	-0.4
1,945,312	+		GFF1920	0.43	-0.1
1,945,312	+		GFF1920	0.43	-1.4
1,945,319	-		GFF1920	0.44	-0.8
1,945,320	-		GFF1920	0.44	-1.4
1,945,320	-		GFF1920	0.44	-1.0
1,945,320	-		GFF1920	0.44	-0.9
1,945,320	-		GFF1920	0.44	-0.4
1,945,320	-		GFF1920	0.44	+0.1
1,945,321	+		GFF1920	0.44	-1.2
1,945,378	+		GFF1920	0.48	-3.2
1,945,386	-		GFF1920	0.48	+0.7
1,945,386	-		GFF1920	0.48	-1.6
1,945,412	-		GFF1920	0.50	-2.3
1,945,419	+		GFF1920	0.50	-1.6
1,945,430	+		GFF1920	0.51	+0.8
1,945,433	-		GFF1920	0.51	-0.7
1,945,471	+		GFF1920	0.53	-2.5
1,945,471	+		GFF1920	0.53	-0.8
1,945,471	-		GFF1920	0.53	+0.3
1,945,471	-		GFF1920	0.53	-1.4
1,945,471	-		GFF1920	0.53	-1.8
1,945,479	-		GFF1920	0.54	-1.9
1,945,479	-		GFF1920	0.54	-0.7
1,945,479	-		GFF1920	0.54	-2.1
1,945,485	+		GFF1920	0.54	-0.3
1,945,521	+		GFF1920	0.57	-0.4
1,945,642	-		GFF1920	0.64	-2.6
1,945,703	-		GFF1920	0.68	-1.0
1,945,705	-		GFF1920	0.68	-1.5
1,945,759	-		GFF1920	0.72	-1.0
1,945,772	+		GFF1920	0.73	-1.3
1,945,784	+		GFF1920	0.73	-1.3
1,945,794	+		GFF1920	0.74	-3.5
1,945,794	+		GFF1920	0.74	-1.2
1,945,794	+		GFF1920	0.74	-0.3
1,945,794	+		GFF1920	0.74	-0.7
1,945,802	-		GFF1920	0.75	-0.9
1,945,807	-		GFF1920	0.75	+0.1
1,945,812	+		GFF1920	0.75	-1.9
1,945,840	-		GFF1920	0.77	-0.7
1,945,868	+		GFF1920	0.79	-0.7
1,945,868	+		GFF1920	0.79	-0.5
1,945,880	+		GFF1920	0.80	-0.5
1,945,900	+		GFF1920	0.81	-0.7
1,945,910	+		GFF1920	0.81	-1.4
1,945,918	-		GFF1920	0.82	-1.4
1,945,918	-		GFF1920	0.82	-2.2
1,945,918	-		GFF1920	0.82	+0.6
1,945,918	-		GFF1920	0.82	-0.4
1,945,929	+		GFF1920	0.83	-0.9
1,945,932	-		GFF1920	0.83	-1.0
1,945,932	-		GFF1920	0.83	-2.6
1,945,932	-		GFF1920	0.83	-1.7
1,945,943	+		GFF1920	0.84	-1.2
1,945,948	+		GFF1920	0.84	-0.7
1,945,948	+		GFF1920	0.84	-0.6
1,945,963	+		GFF1920	0.85	+0.5
1,945,968	-		GFF1920	0.85	-3.0
1,945,978	-		GFF1920	0.86	-0.9
1,945,996	-		GFF1920	0.87	-2.0
1,945,996	-		GFF1920	0.87	-0.3
1,946,033	-		GFF1920	0.89	-0.5
1,946,068	-				-0.1
1,946,180	-				-0.3
1,946,196	+				-1.0
1,946,242	+				-1.3
1,946,250	-				-0.9
1,946,250	-				-1.4
1,946,268	+				-2.2
1,946,268	+				-1.7
1,946,276	-				-0.6
1,946,280	-				+0.0
1,946,301	+				-1.1
1,946,301	+				-0.9
1,946,365	-		GFF1921	0.12	-0.7
1,946,376	+		GFF1921	0.13	-0.5
1,946,381	+		GFF1921	0.13	+0.0
1,946,382	+		GFF1921	0.14	-0.4
1,946,382	+		GFF1921	0.14	-0.1
1,946,384	-		GFF1921	0.14	-1.2
1,946,384	-		GFF1921	0.14	-0.4
1,946,384	-		GFF1921	0.14	-3.0
1,946,384	-		GFF1921	0.14	-1.5
1,946,389	-		GFF1921	0.14	-2.0
1,946,389	-		GFF1921	0.14	-2.0
1,946,390	-		GFF1921	0.14	-0.8
1,946,390	-		GFF1921	0.14	-2.6
1,946,390	-		GFF1921	0.14	-2.5
1,946,390	-		GFF1921	0.14	-3.4
1,946,390	-		GFF1921	0.14	-1.0
1,946,391	+		GFF1921	0.14	-1.7
1,946,433	-		GFF1921	0.17	+0.6
1,946,437	+		GFF1921	0.18	-3.1
1,946,439	+		GFF1921	0.18	-0.3
1,946,447	-		GFF1921	0.18	-2.7
1,946,488	-		GFF1921	0.21	-2.1
1,946,488	-		GFF1921	0.21	-1.4
1,946,508	+		GFF1921	0.23	-0.9
1,946,516	+		GFF1921	0.23	+0.3
1,946,531	-		GFF1921	0.25	+1.0
1,946,543	-		GFF1921	0.25	-0.9
1,946,560	+		GFF1921	0.27	-2.2
1,946,573	-		GFF1921	0.28	-1.0
1,946,594	+		GFF1921	0.29	-1.1
1,946,605	+		GFF1921	0.30	-1.0
1,946,612	+		GFF1921	0.30	-0.2
1,946,639	+		GFF1921	0.32	-0.3
1,946,683	-		GFF1921	0.36	+0.1
1,946,714	-		GFF1921	0.38	-1.8
1,946,716	+		GFF1921	0.38	-2.3
1,946,716	+		GFF1921	0.38	-2.0
1,946,716	+		GFF1921	0.38	-1.3
1,946,716	+		GFF1921	0.38	-2.8
1,946,716	+		GFF1921	0.38	-1.1
1,946,716	+		GFF1921	0.38	-1.7
1,946,716	+		GFF1921	0.38	-0.6
1,946,716	+		GFF1921	0.38	-0.3
1,946,722	+		GFF1921	0.39	-1.5
1,946,724	-		GFF1921	0.39	-0.4
1,946,724	-		GFF1921	0.39	-0.7
1,946,743	+		GFF1921	0.40	-1.4
1,946,746	-		GFF1921	0.40	+0.0
1,946,751	+		GFF1921	0.41	-2.9
1,946,761	+		GFF1921	0.41	-0.6
1,946,762	+		GFF1921	0.42	-1.2
1,946,797	-		GFF1921	0.44	-2.1
1,946,803	-		GFF1921	0.45	-1.0
1,946,803	-		GFF1921	0.45	+1.0
1,946,808	+		GFF1921	0.45	-0.3
1,946,810	-		GFF1921	0.45	+0.6
1,946,838	+		GFF1921	0.47	-0.8
1,946,838	+		GFF1921	0.47	-0.7
1,946,890	+		GFF1921	0.51	-1.2
1,946,890	+		GFF1921	0.51	-1.4
1,946,903	+		GFF1921	0.52	-1.5
1,946,919	-		GFF1921	0.53	-0.4
1,946,936	+		GFF1921	0.54	+0.0
1,946,944	-		GFF1921	0.55	-0.1
1,946,944	-		GFF1921	0.55	-0.2
1,946,944	-		GFF1921	0.55	-0.5
1,946,945	-		GFF1921	0.55	-1.5
1,947,055	+		GFF1921	0.63	-2.0
1,947,055	+		GFF1921	0.63	-1.0
1,947,075	+		GFF1921	0.65	+0.2
1,947,078	-		GFF1921	0.65	-0.4
1,947,080	+		GFF1921	0.65	-1.4
1,947,088	-		GFF1921	0.65	+0.6
1,947,127	+		GFF1921	0.68	-1.3
1,947,135	-		GFF1921	0.69	-0.1
1,947,135	-		GFF1921	0.69	-1.4
1,947,135	-		GFF1921	0.69	-1.4
1,947,135	-		GFF1921	0.69	-0.5
1,947,147	+		GFF1921	0.70	-0.2
1,947,163	-		GFF1921	0.71	-2.1
1,947,180	+		GFF1921	0.72	-0.3
1,947,180	-		GFF1921	0.72	-0.6
1,947,184	+		GFF1921	0.73	-2.2
1,947,201	-		GFF1921	0.74	-1.1
1,947,233	-		GFF1921	0.76	-1.8
1,947,266	-		GFF1921	0.79	-0.6
1,947,275	-		GFF1921	0.79	-1.3
1,947,348	+		GFF1921	0.85	-1.2
1,947,376	+		GFF1921	0.87	-3.3
1,947,384	-		GFF1921	0.87	-0.4
1,947,422	+				-2.8
1,947,449	-				-0.7
1,947,471	+				-1.3
1,947,479	-				-2.5
1,947,479	-				-2.8
1,947,539	+				+1.2
1,947,541	+				-1.2
1,947,549	-				-0.2
1,947,549	-				-1.6
1,947,549	-				-0.9
1,947,549	-				+0.3
1,947,549	-				+0.0
1,947,549	-				-0.8
1,947,549	-				-2.1
1,947,590	-				-0.9
1,947,607	+				-0.1
1,947,615	-				-0.6
1,947,657	-				-0.4
1,947,657	-				+1.0
1,947,657	-				+0.5
1,947,657	-				-0.2
1,947,657	-				-0.7
1,947,657	-				+1.6
1,947,657	-				+0.8
1,947,750	+		GFF1922	0.17	-1.6
1,947,785	+		GFF1922	0.26	-0.7
1,947,797	+		GFF1922	0.29	-2.0
1,947,799	+		GFF1922	0.30	-2.0
1,947,799	+		GFF1922	0.30	-0.1
1,947,805	-		GFF1922	0.31	-1.3
1,947,815	-		GFF1922	0.34	-1.0
1,947,861	+		GFF1922	0.47	-2.2
1,947,871	-		GFF1922	0.49	-1.7
1,947,881	+		GFF1922	0.52	-0.6
1,947,945	+		GFF1922	0.69	+0.6
1,947,968	+		GFF1922	0.75	+0.2
1,947,983	-		GFF1922	0.79	-1.4
1,948,001	-		GFF1922	0.84	-1.6
1,948,009	-		GFF1922	0.86	-0.6
1,948,029	+				-0.9
1,948,059	+				-1.6
1,948,059	+				+0.4
1,948,059	+				-1.7
1,948,059	+				-0.2
1,948,062	-				+0.7
1,948,067	-				-0.1
1,948,067	-				-0.1
1,948,117	+				-2.1
1,948,160	+				-3.7
1,948,167	+				-0.6
1,948,185	-				-2.1
1,948,187	-				-0.7
1,948,189	+				-1.6
1,948,189	+				-0.9
1,948,189	+				-1.3
1,948,197	-				-0.2
1,948,197	-				-1.4
1,948,197	-				-1.0
1,948,197	-				-2.1
1,948,199	+				+0.6
1,948,211	-		GFF1923	0.11	-1.0
1,948,255	-		GFF1923	0.15	-1.8
1,948,256	-		GFF1923	0.15	-1.2
1,948,274	-		GFF1923	0.16	+1.1
1,948,290	-		GFF1923	0.18	+0.5
1,948,431	+		GFF1923	0.30	-1.7
1,948,431	+		GFF1923	0.30	-0.1
1,948,431	+		GFF1923	0.30	-0.2
1,948,431	+		GFF1923	0.30	-1.3
1,948,431	+		GFF1923	0.30	-1.1
1,948,431	+		GFF1923	0.30	-1.2
1,948,431	+		GFF1923	0.30	-1.5
1,948,431	+		GFF1923	0.30	+0.5
1,948,431	+		GFF1923	0.30	-0.6
1,948,431	+		GFF1923	0.30	-3.0
1,948,434	-		GFF1923	0.30	-1.1
1,948,436	+		GFF1923	0.30	+0.2
1,948,436	+		GFF1923	0.30	-1.2
1,948,436	+		GFF1923	0.30	-2.7
1,948,439	-		GFF1923	0.30	-1.4
1,948,439	-		GFF1923	0.30	-0.7
1,948,439	-		GFF1923	0.30	-1.7
1,948,469	+		GFF1923	0.33	-2.0
1,948,470	-		GFF1923	0.33	-0.4
1,948,477	-		GFF1923	0.34	+0.0
1,948,477	-		GFF1923	0.34	-1.3
1,948,482	-		GFF1923	0.34	-1.5
1,948,520	+		GFF1923	0.37	-0.8
1,948,520	+		GFF1923	0.37	-1.8
1,948,520	+		GFF1923	0.37	-2.4
1,948,520	+		GFF1923	0.37	-0.5
1,948,520	+		GFF1923	0.37	-1.0
1,948,520	+		GFF1923	0.37	-0.6
1,948,528	-		GFF1923	0.38	-1.0
1,948,528	-		GFF1923	0.38	+0.0
1,948,534	+		GFF1923	0.38	-1.7
1,948,534	+		GFF1923	0.38	-2.1
1,948,534	+		GFF1923	0.38	-2.1
1,948,542	-		GFF1923	0.39	-1.1
1,948,542	-		GFF1923	0.39	-1.0
1,948,544	+		GFF1923	0.39	-2.2
1,948,548	-		GFF1923	0.40	-0.3