Strain Fitness in Sphingobium sp. HT1-2 around GFF1896

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,918,896	-		GFF1895	0.34	-0.5
1,918,897	+		GFF1895	0.34	-1.3
1,918,917	-		GFF1895	0.36	-0.4
1,918,919	-		GFF1895	0.36	-1.0
1,918,947	+		GFF1895	0.38	+2.0
1,918,948	+		GFF1895	0.38	-1.5
1,918,953	+		GFF1895	0.38	-0.0
1,918,971	+		GFF1895	0.39	-1.8
1,918,979	+		GFF1895	0.40	-0.7
1,918,979	+		GFF1895	0.40	-1.5
1,918,979	+		GFF1895	0.40	-1.0
1,918,979	+		GFF1895	0.40	-1.4
1,918,987	-		GFF1895	0.41	+0.6
1,918,988	-		GFF1895	0.41	-1.0
1,918,989	+		GFF1895	0.41	+0.8
1,919,037	+		GFF1895	0.44	-0.3
1,919,063	+		GFF1895	0.46	-0.7
1,919,071	-		GFF1895	0.47	-0.5
1,919,071	-		GFF1895	0.47	-2.2
1,919,093	+		GFF1895	0.48	-1.4
1,919,093	+		GFF1895	0.48	+0.2
1,919,096	-		GFF1895	0.49	-1.2
1,919,096	-		GFF1895	0.49	-1.0
1,919,096	-		GFF1895	0.49	-1.8
1,919,096	-		GFF1895	0.49	-1.4
1,919,096	-		GFF1895	0.49	+0.4
1,919,126	+		GFF1895	0.51	+0.8
1,919,155	+		GFF1895	0.53	+0.2
1,919,161	+		GFF1895	0.53	-0.0
1,919,161	+		GFF1895	0.53	-3.1
1,919,169	-		GFF1895	0.54	+0.7
1,919,169	-		GFF1895	0.54	-0.5
1,919,171	+		GFF1895	0.54	-1.3
1,919,171	+		GFF1895	0.54	-1.2
1,919,179	-		GFF1895	0.55	+1.3
1,919,204	+		GFF1895	0.57	-0.0
1,919,204	+		GFF1895	0.57	+1.1
1,919,218	+		GFF1895	0.58	+0.4
1,919,248	+		GFF1895	0.60	+0.5
1,919,248	+		GFF1895	0.60	+1.8
1,919,248	+		GFF1895	0.60	-1.0
1,919,248	+		GFF1895	0.60	+0.1
1,919,256	-		GFF1895	0.60	+0.8
1,919,256	-		GFF1895	0.60	-1.0
1,919,311	+		GFF1895	0.64	+0.4
1,919,311	+		GFF1895	0.64	-0.2
1,919,311	+		GFF1895	0.64	-0.0
1,919,311	+		GFF1895	0.64	-0.3
1,919,312	-		GFF1895	0.64	-0.5
1,919,319	-		GFF1895	0.65	-1.0
1,919,353	+		GFF1895	0.67	+0.6
1,919,358	-		GFF1895	0.68	-1.3
1,919,371	+		GFF1895	0.69	-0.5
1,919,376	+		GFF1895	0.69	-0.5
1,919,376	+		GFF1895	0.69	+0.3
1,919,406	+		GFF1895	0.71	-0.4
1,919,411	+		GFF1895	0.72	-0.3
1,919,411	+		GFF1895	0.72	+1.2
1,919,433	+		GFF1895	0.73	-0.0
1,919,444	+		GFF1895	0.74	+0.1
1,919,515	+		GFF1895	0.79	-0.4
1,919,603	+		GFF1895	0.86	+0.2
1,919,611	-		GFF1895	0.86	+0.7
1,919,616	+		GFF1895	0.87	-1.0
1,919,622	+		GFF1895	0.87	+1.4
1,919,628	-		GFF1895	0.88	-0.6
1,919,701	+				-0.6
1,919,706	+				-0.7
1,919,730	-				-0.0
1,919,732	+				+0.0
1,919,732	+				-0.2
1,919,732	+				-0.8
1,919,732	+				+0.3
1,919,732	+				+0.0
1,919,740	-				-0.6
1,919,740	-				+0.6
1,919,788	+				-0.8
1,919,788	+				-0.5
1,919,790	-				-0.2
1,919,793	+				-0.0
1,919,796	-				-0.7
1,919,796	-				+0.3
1,919,802	-				+0.5
1,919,802	-				+0.6
1,919,802	-				-0.2
1,919,846	-				+0.4
1,919,859	+				+0.1
1,919,867	-				-1.3
1,919,867	-				-2.1
1,919,932	+				-1.5
1,919,932	+				+0.1
1,919,932	+				-0.6
1,919,937	+				+1.8
1,919,938	-				-1.1
1,919,963	-		GFF1896	0.11	-0.1
1,919,966	-		GFF1896	0.11	+0.0
1,919,982	+		GFF1896	0.13	-1.2
1,920,010	+		GFF1896	0.17	+0.8
1,920,010	+		GFF1896	0.17	-1.0
1,920,015	+		GFF1896	0.18	-0.2
1,920,018	-		GFF1896	0.19	-0.1
1,920,018	-		GFF1896	0.19	+1.4
1,920,018	-		GFF1896	0.19	+0.1
1,920,018	-		GFF1896	0.19	-1.4
1,920,018	-		GFF1896	0.19	-0.4
1,920,018	-		GFF1896	0.19	-0.3
1,920,033	+		GFF1896	0.21	-0.2
1,920,040	-		GFF1896	0.22	-1.8
1,920,053	-		GFF1896	0.24	-0.9
1,920,064	+		GFF1896	0.25	+1.6
1,920,071	+		GFF1896	0.26	-1.7
1,920,076	+		GFF1896	0.27	-1.8
1,920,087	+		GFF1896	0.28	+0.4
1,920,089	-		GFF1896	0.29	+0.2
1,920,095	-		GFF1896	0.29	-0.1
1,920,104	+		GFF1896	0.31	-0.4
1,920,104	+		GFF1896	0.31	-0.6
1,920,104	+		GFF1896	0.31	-0.8
1,920,112	-		GFF1896	0.32	-0.8
1,920,112	-		GFF1896	0.32	-1.9
1,920,112	-		GFF1896	0.32	-1.8
1,920,112	-		GFF1896	0.32	+0.0
1,920,163	-		GFF1896	0.39	+0.6
1,920,165	-		GFF1896	0.39	-0.7
1,920,168	+		GFF1896	0.40	-0.3
1,920,195	+		GFF1896	0.44	-2.1
1,920,195	+		GFF1896	0.44	-0.6
1,920,195	+		GFF1896	0.44	+1.2
1,920,195	+		GFF1896	0.44	+1.0
1,920,195	+		GFF1896	0.44	+0.2
1,920,195	+		GFF1896	0.44	-0.3
1,920,203	-		GFF1896	0.45	+0.9
1,920,203	-		GFF1896	0.45	-0.8
1,920,203	-		GFF1896	0.45	-0.6
1,920,203	-		GFF1896	0.45	-1.6
1,920,203	-		GFF1896	0.45	+0.4
1,920,203	-		GFF1896	0.45	-0.5
1,920,203	-		GFF1896	0.45	+0.2
1,920,203	-		GFF1896	0.45	-2.0
1,920,203	-		GFF1896	0.45	-0.6
1,920,203	-		GFF1896	0.45	+0.1
1,920,203	-		GFF1896	0.45	-0.3
1,920,203	-		GFF1896	0.45	-0.0
1,920,203	-		GFF1896	0.45	-0.1
1,920,203	-		GFF1896	0.45	+0.0
1,920,203	-		GFF1896	0.45	+0.4
1,920,238	+		GFF1896	0.50	+0.2
1,920,240	+		GFF1896	0.50	-0.7
1,920,240	+		GFF1896	0.50	-1.5
1,920,240	+		GFF1896	0.50	+0.5
1,920,240	+		GFF1896	0.50	+0.3
1,920,248	-		GFF1896	0.51	-0.3
1,920,248	-		GFF1896	0.51	+0.6
1,920,266	+		GFF1896	0.54	-0.0
1,920,274	-		GFF1896	0.55	-1.4
1,920,276	+		GFF1896	0.55	+0.9
1,920,276	+		GFF1896	0.55	-1.0
1,920,282	+		GFF1896	0.56	+1.0
1,920,284	-		GFF1896	0.56	-0.8
1,920,284	-		GFF1896	0.56	-0.8
1,920,289	-		GFF1896	0.57	-0.0
1,920,289	-		GFF1896	0.57	-1.5
1,920,308	+		GFF1896	0.60	-0.2
1,920,309	+		GFF1896	0.60	+1.3
1,920,313	+		GFF1896	0.61	-0.4
1,920,321	-		GFF1896	0.62	+0.2
1,920,326	+		GFF1896	0.62	+1.3
1,920,326	+		GFF1896	0.62	-0.9
1,920,331	+		GFF1896	0.63	-2.4
1,920,331	+		GFF1896	0.63	-1.9
1,920,331	+		GFF1896	0.63	-0.8
1,920,333	+		GFF1896	0.63	+0.7
1,920,333	+		GFF1896	0.63	-0.6
1,920,333	+		GFF1896	0.63	-1.5
1,920,333	+		GFF1896	0.63	-0.0
1,920,333	+		GFF1896	0.63	-0.1
1,920,333	+		GFF1896	0.63	-0.1
1,920,333	+		GFF1896	0.63	-0.8
1,920,334	-		GFF1896	0.64	-2.0
1,920,334	-		GFF1896	0.64	+1.6
1,920,339	-		GFF1896	0.64	-1.0
1,920,339	-		GFF1896	0.64	-1.2
1,920,339	-		GFF1896	0.64	-0.4
1,920,339	-		GFF1896	0.64	+0.2
1,920,339	-		GFF1896	0.64	-0.8
1,920,339	-		GFF1896	0.64	+0.5
1,920,339	-		GFF1896	0.64	-0.0
1,920,339	-		GFF1896	0.64	+0.4
1,920,341	-		GFF1896	0.65	+0.1
1,920,341	-		GFF1896	0.65	-1.9
1,920,341	-		GFF1896	0.65	-0.6
1,920,341	-		GFF1896	0.65	+1.2
1,920,341	-		GFF1896	0.65	-0.4
1,920,341	-		GFF1896	0.65	-2.2
1,920,341	-		GFF1896	0.65	-0.1
1,920,341	-		GFF1896	0.65	-0.8
1,920,341	-		GFF1896	0.65	+0.2
1,920,341	-		GFF1896	0.65	+0.7
1,920,350	+		GFF1896	0.66	+0.7
1,920,350	+		GFF1896	0.66	-0.4
1,920,352	+		GFF1896	0.66	-0.5
1,920,358	-		GFF1896	0.67	-0.8
1,920,413	+		GFF1896	0.75	-0.2
1,920,421	-		GFF1896	0.76	-1.0
1,920,421	-		GFF1896	0.76	-0.1
1,920,428	-		GFF1896	0.77	-1.5
1,920,428	-		GFF1896	0.77	-0.1
1,920,428	-		GFF1896	0.77	-1.2
1,920,449	-		GFF1896	0.80	+1.3
1,920,450	+		GFF1896	0.80	+0.7
1,920,471	-		GFF1896	0.83	-2.1
1,920,501	+		GFF1896	0.87	-1.4
1,920,521	+				-0.3
1,920,528	+				-2.8
1,920,545	+				-0.4
1,920,546	-				+1.2
1,920,553	-				-1.9
1,920,553	-				-1.2
1,920,553	-				-0.0
1,920,557	+				-1.4
1,920,565	-				+0.6
1,920,567	+				-0.3
1,920,574	+				-0.2
1,920,574	+				+0.9
1,920,574	+				-0.2
1,920,574	+				+0.6
1,920,574	+				+0.7
1,920,574	+				-1.0
1,920,574	+				-1.3
1,920,574	+				-0.4
1,920,582	-				-1.0
1,920,582	-				-2.1
1,920,582	-				+0.2
1,920,585	+				+0.2
1,920,585	+				-1.5
1,920,585	+				-1.4
1,920,585	+				+0.8
1,920,585	+				-1.6
1,920,585	+				-1.9
1,920,585	+				-1.6
1,920,585	+				-2.1
1,920,585	+				-1.0
1,920,585	+				-0.5
1,920,585	+				+1.2
1,920,593	-				+0.7
1,920,593	-				-1.1
1,920,593	-				+0.2
1,920,608	+				-1.2
1,920,608	+				-2.3
1,920,615	+				+0.6
1,920,615	+				+0.8
1,920,615	+				-1.0
1,920,616	-				-1.0
1,920,616	-				-0.1
1,920,616	-				-2.2
1,920,623	-				-0.9
1,920,626	+				-0.7
1,920,627	+				-1.4
1,920,632	+				+0.5
1,920,634	-				-1.6
1,920,659	+				+1.1
1,920,659	+				-1.6
1,920,659	+				+0.4
1,920,659	+				-0.6
1,920,659	+				-0.2
1,920,659	+				+0.0
1,920,659	+				+0.6
1,920,659	+				-0.0
1,920,660	+				-2.0
1,920,667	-				-0.6
1,920,667	-				+0.0
1,920,667	-				+0.5
1,920,667	-				-0.3
1,920,667	-				-1.4
1,920,675	+				-0.9
1,920,680	+				-0.0
1,920,680	+				-0.8
1,920,683	-				+0.2
1,920,685	+				+0.8
1,920,685	-				-0.6
1,920,687	+				+0.6
1,920,688	-				-0.0
1,920,688	-				-0.5
1,920,688	-				-0.9
1,920,695	+				-0.3
1,920,697	+				-0.8
1,920,701	-				-0.8
1,920,705	-				+0.0
1,920,741	+				-1.0
1,920,741	+				+0.3
1,920,741	+				-0.8
1,920,741	+				+2.3
1,920,741	+				+0.7
1,920,741	+				-1.2
1,920,749	-				-2.0
1,920,749	-				-2.0
1,920,780	+				-1.0
1,920,780	+				+0.3
1,920,788	-				-0.2
1,920,788	-				-1.3
1,920,797	+				+0.3
1,920,799	+				-0.1
1,920,854	+		GFF1897	0.12	+0.3
1,920,854	+		GFF1897	0.12	-0.5
1,920,854	+		GFF1897	0.12	-1.1
1,920,854	+		GFF1897	0.12	+0.2
1,920,860	-		GFF1897	0.14	-1.4
1,920,862	-		GFF1897	0.15	-0.6
1,920,910	+		GFF1897	0.29	+0.6
1,920,946	+		GFF1897	0.40	-0.5
1,920,952	+		GFF1897	0.42	-1.8
1,920,952	+		GFF1897	0.42	-0.5
1,920,952	+		GFF1897	0.42	-0.3
1,920,952	+		GFF1897	0.42	-0.2
1,920,954	-		GFF1897	0.43	-1.5
1,920,954	-		GFF1897	0.43	+1.3
1,920,958	+		GFF1897	0.44	-0.7
1,920,958	+		GFF1897	0.44	+0.4
1,920,958	+		GFF1897	0.44	-2.0
1,920,958	+		GFF1897	0.44	+0.2
1,920,958	+		GFF1897	0.44	+0.5
1,920,960	-		GFF1897	0.45	-0.2
1,920,960	-		GFF1897	0.45	+0.0
1,920,960	-		GFF1897	0.45	+0.8
1,920,966	-		GFF1897	0.46	-0.2
1,920,966	-		GFF1897	0.46	+0.6
1,920,966	-		GFF1897	0.46	-0.3
1,920,966	-		GFF1897	0.46	+1.1
1,920,966	-		GFF1897	0.46	+0.5
1,920,966	-		GFF1897	0.46	-0.4
1,920,973	+		GFF1897	0.48	-0.5
1,920,979	-		GFF1897	0.50	-0.2
1,920,984	+		GFF1897	0.52	+0.6
1,921,011	+		GFF1897	0.60	+1.0
1,921,056	-		GFF1897	0.74	+0.8
1,921,083	+		GFF1897	0.82	+1.3
1,921,083	+		GFF1897	0.82	+1.3
1,921,091	-		GFF1897	0.84	-0.2
1,921,129	+				-0.1
1,921,143	+				-1.5
1,921,160	-				+1.2
1,921,160	-				+0.6
1,921,160	-				-0.3
1,921,160	-				-1.4
1,921,195	+				-1.9
1,921,195	+				-0.9
1,921,203	-				-1.4
1,921,203	-				+0.5
1,921,203	-				-0.3
1,921,203	-				-0.1
1,921,203	-				-0.4
1,921,203	-				-1.0
1,921,206	+				+1.0
1,921,238	-				+0.5
1,921,250	+				-1.5
1,921,251	-				-0.2
1,921,269	-				-2.3
1,921,274	-				+0.8
1,921,280	+				-0.3
1,921,330	+				+0.1
1,921,330	+				-1.3
1,921,343	-				+1.0
1,921,343	-				-0.4
1,921,348	+				+0.4
1,921,361	-				-1.2
1,921,363	+				-2.3
1,921,365	+				+0.1
1,921,365	+				+0.0
1,921,365	+				+0.3
1,921,365	+				-1.5
1,921,365	+				+0.5
1,921,365	+				-0.3
1,921,373	-				-0.5
1,921,373	-				+0.0
1,921,373	-				-1.9
1,921,373	-				+0.3
1,921,373	-				-1.1
1,921,373	-				-1.3
1,921,373	-				+0.7
1,921,385	+				-1.0
1,921,388	-				-0.2
1,921,403	-				-0.2
1,921,408	+				-0.6
1,921,426	-				-0.2
1,921,432	+				-0.4
1,921,440	-				-0.2
1,921,440	-				-1.6
1,921,444	+				+0.0
1,921,444	+				-0.2
1,921,454	+				-0.2
1,921,457	-				+1.0
1,921,457	-				-1.4
1,921,462	-				-0.3
1,921,467	-				-0.5
1,921,477	+				-0.2
1,921,521	+				-0.2
1,921,573	+				-0.6
1,921,577	+				+0.6
1,921,585	-				-1.6
1,921,585	-				-2.7
1,921,585	-				+1.3