Strain Fitness in Sphingobium sp. HT1-2 around GFF1856

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,885,235	+		GFF1855	0.18	-1.6
1,885,255	+		GFF1855	0.20	-0.6
1,885,317	+		GFF1855	0.25	-0.7
1,885,346	-		GFF1855	0.28	-0.1
1,885,357	+		GFF1855	0.29	-0.4
1,885,357	+		GFF1855	0.29	-1.0
1,885,372	+		GFF1855	0.30	-1.9
1,885,372	+		GFF1855	0.30	+0.0
1,885,376	+		GFF1855	0.31	-1.4
1,885,380	-		GFF1855	0.31	-2.7
1,885,381	+		GFF1855	0.31	-0.9
1,885,389	-		GFF1855	0.32	+0.6
1,885,389	-		GFF1855	0.32	-1.8
1,885,404	-		GFF1855	0.33	-0.9
1,885,467	-		GFF1855	0.38	-0.4
1,885,500	+		GFF1855	0.41	-2.3
1,885,508	-		GFF1855	0.42	-1.1
1,885,508	-		GFF1855	0.42	-1.0
1,885,508	-		GFF1855	0.42	-0.2
1,885,576	+		GFF1855	0.48	-0.4
1,885,576	+		GFF1855	0.48	-0.9
1,885,576	+		GFF1855	0.48	-1.1
1,885,576	+		GFF1855	0.48	-2.2
1,885,576	+		GFF1855	0.48	-0.9
1,885,581	+		GFF1855	0.48	-1.0
1,885,581	+		GFF1855	0.48	-1.0
1,885,581	+		GFF1855	0.48	+0.3
1,885,584	-		GFF1855	0.49	-1.6
1,885,584	-		GFF1855	0.49	-1.9
1,885,589	-		GFF1855	0.49	-0.2
1,885,589	-		GFF1855	0.49	-0.4
1,885,589	-		GFF1855	0.49	-0.6
1,885,589	-		GFF1855	0.49	-1.8
1,885,602	+		GFF1855	0.50	-1.1
1,885,602	+		GFF1855	0.50	+0.4
1,885,602	+		GFF1855	0.50	-1.7
1,885,602	+		GFF1855	0.50	-0.3
1,885,610	-		GFF1855	0.51	-0.6
1,885,610	-		GFF1855	0.51	-0.9
1,885,610	-		GFF1855	0.51	-0.7
1,885,610	-		GFF1855	0.51	-1.7
1,885,694	-		GFF1855	0.58	-1.6
1,885,823	+		GFF1855	0.69	-0.9
1,885,866	+		GFF1855	0.73	+1.0
1,885,911	-		GFF1855	0.77	-1.9
1,885,935	-		GFF1855	0.79	-1.3
1,885,957	+		GFF1855	0.81	-1.0
1,885,997	+		GFF1855	0.84	-1.0
1,886,013	+		GFF1855	0.86	-1.2
1,886,061	-				-1.1
1,886,079	+				-0.2
1,886,097	+				-1.9
1,886,112	-				-0.1
1,886,112	-				-1.0
1,886,112	-				-1.1
1,886,145	-				-1.4
1,886,177	-				-1.1
1,886,199	+				-1.4
1,886,216	+				-1.3
1,886,224	-				+0.7
1,886,241	-				-0.5
1,886,259	+				-1.9
1,886,259	-				-1.7
1,886,294	-				-1.2
1,886,312	+		GFF1856	0.12	-1.2
1,886,320	-		GFF1856	0.13	-2.3
1,886,320	-		GFF1856	0.13	-2.3
1,886,353	+		GFF1856	0.17	-1.9
1,886,353	+		GFF1856	0.17	-1.3
1,886,353	+		GFF1856	0.17	-3.0
1,886,353	+		GFF1856	0.17	-1.9
1,886,353	+		GFF1856	0.17	+0.0
1,886,353	+		GFF1856	0.17	-1.3
1,886,353	+		GFF1856	0.17	+0.4
1,886,353	+		GFF1856	0.17	-0.6
1,886,353	+		GFF1856	0.17	-1.0
1,886,353	+		GFF1856	0.17	+0.2
1,886,353	+		GFF1856	0.17	-0.7
1,886,353	+		GFF1856	0.17	+1.0
1,886,353	+		GFF1856	0.17	-1.4
1,886,361	-		GFF1856	0.18	+0.0
1,886,361	-		GFF1856	0.18	-0.9
1,886,361	-		GFF1856	0.18	-1.0
1,886,361	-		GFF1856	0.18	+0.0
1,886,361	-		GFF1856	0.18	-2.3
1,886,361	-		GFF1856	0.18	-1.0
1,886,389	+		GFF1856	0.22	+0.0
1,886,406	-		GFF1856	0.24	-0.9
1,886,421	+		GFF1856	0.26	+0.6
1,886,434	+		GFF1856	0.27	-1.4
1,886,439	+		GFF1856	0.28	-1.6
1,886,444	+		GFF1856	0.29	+0.3
1,886,444	+		GFF1856	0.29	-0.2
1,886,452	-		GFF1856	0.30	-0.4
1,886,487	-		GFF1856	0.34	-0.6
1,886,516	+		GFF1856	0.38	-2.4
1,886,522	-		GFF1856	0.39	-0.4
1,886,524	-		GFF1856	0.39	-1.2
1,886,524	-		GFF1856	0.39	-1.5
1,886,524	-		GFF1856	0.39	+1.6
1,886,524	-		GFF1856	0.39	-1.7
1,886,524	-		GFF1856	0.39	+0.3
1,886,524	-		GFF1856	0.39	-0.6
1,886,531	-		GFF1856	0.40	-1.0
1,886,554	+		GFF1856	0.43	-1.9
1,886,575	-		GFF1856	0.46	-1.6
1,886,630	-		GFF1856	0.53	-0.4
1,886,651	-		GFF1856	0.55	-0.2
1,886,711	+		GFF1856	0.63	-2.4
1,886,727	+		GFF1856	0.65	-0.9
1,886,735	-		GFF1856	0.66	-1.5
1,886,735	-		GFF1856	0.66	+0.3
1,886,772	+		GFF1856	0.71	+1.0
1,886,772	+		GFF1856	0.71	-0.9
1,886,772	+		GFF1856	0.71	-1.8
1,886,777	+		GFF1856	0.72	+0.0
1,886,780	-		GFF1856	0.72	-0.6
1,886,780	-		GFF1856	0.72	+0.6
1,886,780	-		GFF1856	0.72	-0.4
1,886,780	-		GFF1856	0.72	+0.0
1,886,780	-		GFF1856	0.72	-1.2
1,886,780	-		GFF1856	0.72	-1.2
1,886,848	+		GFF1856	0.81	-1.2
1,886,848	+		GFF1856	0.81	-1.3
1,886,856	-		GFF1856	0.82	-1.7
1,886,865	+		GFF1856	0.83	-1.4
1,886,865	+		GFF1856	0.83	-1.0
1,886,865	+		GFF1856	0.83	-0.2
1,886,865	+		GFF1856	0.83	-2.0
1,886,865	+		GFF1856	0.83	-2.0
1,886,869	+		GFF1856	0.84	-1.6
1,886,873	-		GFF1856	0.84	+0.5
1,886,873	-		GFF1856	0.84	+0.3
1,886,873	-		GFF1856	0.84	-1.8
1,886,877	-		GFF1856	0.85	-0.2
1,886,912	+		GFF1856	0.89	-0.4
1,886,918	+				+0.2
1,886,929	+				-0.2
1,886,931	+				-1.1
1,886,939	+				-1.0
1,886,947	-				-0.7
1,886,947	-				-0.1
1,886,965	-				-0.9
1,886,970	+				-1.0
1,886,990	+				+1.3
1,886,996	-				-0.7
1,886,996	-				-2.2
1,886,997	+				-0.4
1,886,997	+				+0.3
1,886,997	+				+0.3
1,886,998	-				-1.3
1,887,000	-				+0.7
1,887,011	-				+0.4
1,887,028	+				-1.3
1,887,036	-		GFF1857	0.10	+0.4
1,887,080	-		GFF1857	0.16	-1.4
1,887,090	-		GFF1857	0.17	-0.5
1,887,136	+		GFF1857	0.23	-1.9
1,887,201	-		GFF1857	0.31	-1.6
1,887,237	-		GFF1857	0.36	-1.3
1,887,445	-		GFF1857	0.62	-0.1
1,887,445	-		GFF1857	0.62	-1.7
1,887,445	-		GFF1857	0.62	-0.7
1,887,455	-		GFF1857	0.64	-0.1
1,887,498	+		GFF1857	0.69	-2.3
1,887,536	+		GFF1857	0.74	-1.9
1,887,541	+		GFF1857	0.75	-1.2
1,887,541	+		GFF1857	0.75	-0.7
1,887,541	+		GFF1857	0.75	-0.7
1,887,541	+		GFF1857	0.75	-1.2
1,887,546	+		GFF1857	0.75	-1.0
1,887,549	-		GFF1857	0.76	-1.3
1,887,589	-		GFF1857	0.81	-1.1
1,887,605	+		GFF1857	0.83	+0.6
1,887,613	-		GFF1857	0.84	-1.2
1,887,620	-		GFF1857	0.85	+0.4
1,887,639	-		GFF1857	0.87	-0.7
1,887,645	+		GFF1857	0.88	-0.7
1,887,658	-		GFF1857	0.90	-1.4
1,887,658	-		GFF1857	0.90	-0.9
1,887,667	+				-2.1
1,887,724	-				-1.3
1,887,733	+				-1.7
1,887,735	-				-1.5
1,887,754	+				-1.1
1,887,790	-				-1.7
1,887,821	+		GFF1858	0.12	-1.5
1,887,886	-		GFF1858	0.21	-0.7
1,887,965	-		GFF1858	0.32	-1.3
1,887,982	-		GFF1858	0.34	-0.5