Strain Fitness in Sphingobium sp. HT1-2 around GFF184

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF182 and GFF183 are separated by 170 nucleotidesGFF183 and GFF184 are separated by 134 nucleotidesGFF184 and GFF185 are separated by 187 nucleotides GFF182 - hypothetical protein, at 185,177 to 185,659 GFF182 GFF183 - Transcriptional regulator, AcrR family, at 185,830 to 186,432 GFF183 GFF184 - Alkyl hydroperoxide reductase protein C (EC 1.11.1.15), at 186,567 to 187,130 GFF184 GFF185 - Alkyl hydroperoxide reductase protein F, at 187,318 to 188,898 GFF185 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 185.572 kb on - strand, within GFF182at 185.591 kb on + strand, within GFF182at 185.613 kb on + strandat 185.629 kb on + strandat 185.631 kb on - strandat 185.650 kb on + strandat 185.658 kb on - strandat 185.745 kb on - strandat 185.750 kb on - strandat 185.750 kb on - strandat 185.750 kb on - strandat 185.819 kb on - strandat 185.824 kb on + strandat 185.824 kb on + strandat 185.824 kb on + strandat 185.832 kb on - strandat 185.832 kb on - strandat 185.832 kb on - strandat 185.850 kb on + strandat 185.913 kb on + strand, within GFF183at 185.924 kb on + strand, within GFF183at 185.927 kb on + strand, within GFF183at 185.927 kb on + strand, within GFF183at 185.927 kb on + strand, within GFF183at 185.935 kb on - strand, within GFF183at 185.935 kb on - strand, within GFF183at 185.935 kb on - strand, within GFF183at 185.945 kb on + strand, within GFF183at 185.963 kb on + strand, within GFF183at 185.973 kb on + strand, within GFF183at 185.993 kb on + strand, within GFF183at 186.001 kb on + strand, within GFF183at 186.009 kb on - strand, within GFF183at 186.014 kb on - strand, within GFF183at 186.036 kb on + strand, within GFF183at 186.036 kb on - strand, within GFF183at 186.056 kb on - strand, within GFF183at 186.063 kb on + strand, within GFF183at 186.065 kb on + strand, within GFF183at 186.136 kb on - strand, within GFF183at 186.140 kb on + strand, within GFF183at 186.148 kb on - strand, within GFF183at 186.156 kb on - strand, within GFF183at 186.159 kb on - strand, within GFF183at 186.180 kb on + strand, within GFF183at 186.219 kb on + strand, within GFF183at 186.227 kb on - strand, within GFF183at 186.232 kb on - strand, within GFF183at 186.241 kb on + strand, within GFF183at 186.243 kb on + strand, within GFF183at 186.276 kb on + strand, within GFF183at 186.276 kb on + strand, within GFF183at 186.284 kb on - strand, within GFF183at 186.284 kb on - strand, within GFF183at 186.297 kb on + strand, within GFF183at 186.297 kb on + strand, within GFF183at 186.297 kb on + strand, within GFF183at 186.300 kb on - strand, within GFF183at 186.305 kb on - strand, within GFF183at 186.324 kb on + strand, within GFF183at 186.346 kb on - strand, within GFF183at 186.358 kb on - strand, within GFF183at 186.391 kb on - strandat 186.402 kb on + strandat 186.408 kb on + strandat 186.410 kb on + strandat 186.410 kb on + strandat 186.410 kb on + strandat 186.410 kb on + strandat 186.410 kb on + strandat 186.410 kb on + strandat 186.410 kb on - strandat 186.410 kb on - strandat 186.416 kb on - strandat 186.416 kb on - strandat 186.417 kb on - strandat 186.418 kb on - strandat 186.418 kb on - strandat 186.418 kb on - strandat 186.418 kb on - strandat 186.431 kb on - strandat 186.516 kb on + strandat 186.558 kb on + strandat 186.575 kb on + strandat 186.618 kb on + strandat 186.742 kb on - strand, within GFF184at 186.742 kb on - strand, within GFF184at 186.744 kb on + strand, within GFF184at 186.747 kb on - strand, within GFF184at 186.752 kb on + strand, within GFF184at 186.752 kb on + strand, within GFF184at 186.760 kb on + strand, within GFF184at 186.760 kb on - strand, within GFF184at 186.760 kb on - strand, within GFF184at 186.760 kb on - strand, within GFF184at 186.768 kb on - strand, within GFF184at 186.772 kb on + strand, within GFF184at 186.772 kb on + strand, within GFF184at 186.855 kb on - strand, within GFF184at 186.869 kb on - strand, within GFF184at 186.885 kb on - strand, within GFF184at 186.907 kb on + strand, within GFF184at 186.907 kb on + strand, within GFF184at 186.915 kb on - strand, within GFF184at 186.920 kb on - strand, within GFF184at 187.019 kb on + strand, within GFF184at 187.027 kb on - strand, within GFF184at 187.034 kb on + strand, within GFF184at 187.034 kb on + strand, within GFF184at 187.042 kb on - strand, within GFF184at 187.043 kb on - strand, within GFF184at 187.305 kb on + strandat 187.305 kb on + strandat 187.305 kb on + strandat 187.305 kb on + strandat 187.313 kb on - strandat 187.344 kb on + strandat 187.344 kb on + strandat 187.352 kb on - strandat 187.358 kb on - strandat 187.358 kb on - strandat 187.359 kb on + strandat 187.398 kb on + strandat 187.406 kb on + strandat 187.464 kb on + strandat 187.472 kb on - strandat 187.473 kb on + strandat 187.492 kb on + strand, within GFF185at 187.494 kb on - strand, within GFF185at 187.504 kb on - strand, within GFF185at 187.510 kb on - strand, within GFF185at 187.534 kb on + strand, within GFF185at 187.534 kb on + strand, within GFF185at 187.548 kb on - strand, within GFF185at 187.599 kb on - strand, within GFF185at 187.614 kb on + strand, within GFF185at 187.614 kb on + strand, within GFF185at 187.622 kb on - strand, within GFF185at 187.622 kb on - strand, within GFF185at 187.622 kb on - strand, within GFF185at 187.629 kb on + strand, within GFF185at 187.637 kb on - strand, within GFF185at 187.637 kb on - strand, within GFF185at 187.639 kb on - strand, within GFF185at 187.644 kb on + strand, within GFF185at 187.644 kb on + strand, within GFF185at 187.644 kb on + strand, within GFF185at 187.651 kb on + strand, within GFF185at 187.652 kb on - strand, within GFF185at 187.652 kb on - strand, within GFF185at 187.659 kb on - strand, within GFF185at 187.696 kb on + strand, within GFF185at 187.696 kb on + strand, within GFF185at 187.704 kb on - strand, within GFF185at 187.706 kb on + strand, within GFF185at 187.714 kb on - strand, within GFF185at 187.731 kb on + strand, within GFF185at 187.749 kb on - strand, within GFF185at 187.760 kb on + strand, within GFF185at 187.768 kb on - strand, within GFF185at 187.783 kb on + strand, within GFF185at 187.785 kb on + strand, within GFF185at 187.785 kb on + strand, within GFF185at 187.785 kb on + strand, within GFF185at 187.785 kb on + strand, within GFF185at 187.785 kb on + strand, within GFF185at 187.791 kb on + strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.793 kb on - strand, within GFF185at 187.806 kb on + strand, within GFF185at 187.812 kb on + strand, within GFF185at 187.820 kb on - strand, within GFF185at 187.820 kb on - strand, within GFF185at 187.820 kb on - strand, within GFF185at 187.850 kb on + strand, within GFF185at 187.863 kb on - strand, within GFF185at 187.919 kb on - strand, within GFF185at 187.945 kb on - strand, within GFF185at 187.954 kb on + strand, within GFF185at 188.107 kb on + strand, within GFF185at 188.116 kb on - strand, within GFF185

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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185,572 - GFF182 0.82 +0.3
185,591 + GFF182 0.86 -0.2
185,613 + +1.0
185,629 + +0.4
185,631 - +0.8
185,650 + -0.3
185,658 - -0.5
185,745 - -0.5
185,750 - -0.3
185,750 - -0.3
185,750 - -0.9
185,819 - -0.9
185,824 + -1.2
185,824 + -0.1
185,824 + +0.3
185,832 - -0.0
185,832 - -1.9
185,832 - -0.4
185,850 + -1.4
185,913 + GFF183 0.14 -1.6
185,924 + GFF183 0.16 -1.1
185,927 + GFF183 0.16 +0.2
185,927 + GFF183 0.16 +0.5
185,927 + GFF183 0.16 -0.6
185,935 - GFF183 0.17 +0.8
185,935 - GFF183 0.17 -0.5
185,935 - GFF183 0.17 -0.2
185,945 + GFF183 0.19 -0.4
185,963 + GFF183 0.22 +0.7
185,973 + GFF183 0.24 -2.0
185,993 + GFF183 0.27 -1.5
186,001 + GFF183 0.28 +0.2
186,009 - GFF183 0.30 -0.1
186,014 - GFF183 0.31 +0.2
186,036 + GFF183 0.34 -0.3
186,036 - GFF183 0.34 -0.3
186,056 - GFF183 0.37 -1.7
186,063 + GFF183 0.39 -2.2
186,065 + GFF183 0.39 +0.6
186,136 - GFF183 0.51 -0.0
186,140 + GFF183 0.51 -1.1
186,148 - GFF183 0.53 -0.2
186,156 - GFF183 0.54 +0.5
186,159 - GFF183 0.55 +0.1
186,180 + GFF183 0.58 -0.6
186,219 + GFF183 0.65 +0.6
186,227 - GFF183 0.66 +0.4
186,232 - GFF183 0.67 +0.3
186,241 + GFF183 0.68 -0.1
186,243 + GFF183 0.68 +0.5
186,276 + GFF183 0.74 -0.3
186,276 + GFF183 0.74 +0.1
186,284 - GFF183 0.75 +0.4
186,284 - GFF183 0.75 +0.5
186,297 + GFF183 0.77 -0.8
186,297 + GFF183 0.77 -1.2
186,297 + GFF183 0.77 -2.2
186,300 - GFF183 0.78 -2.2
186,305 - GFF183 0.79 -0.2
186,324 + GFF183 0.82 -0.8
186,346 - GFF183 0.86 +0.3
186,358 - GFF183 0.88 +0.5
186,391 - -0.8
186,402 + -0.6
186,408 + +0.9
186,410 + -1.4
186,410 + +0.5
186,410 + -0.1
186,410 + +0.1
186,410 + +0.6
186,410 + +0.8
186,410 - +0.5
186,410 - -0.8
186,416 - +0.0
186,416 - +0.0
186,417 - -1.4
186,418 - -0.8
186,418 - +0.2
186,418 - -1.4
186,418 - -0.5
186,431 - -0.2
186,516 + +0.1
186,558 + +0.4
186,575 + +2.0
186,618 + +0.1
186,742 - GFF184 0.31 -2.7
186,742 - GFF184 0.31 -0.8
186,744 + GFF184 0.31 -1.3
186,747 - GFF184 0.32 +0.7
186,752 + GFF184 0.33 -1.2
186,752 + GFF184 0.33 +0.0
186,760 + GFF184 0.34 -1.6
186,760 - GFF184 0.34 +1.0
186,760 - GFF184 0.34 -0.7
186,760 - GFF184 0.34 -1.2
186,768 - GFF184 0.36 +0.7
186,772 + GFF184 0.36 -1.2
186,772 + GFF184 0.36 +0.5
186,855 - GFF184 0.51 -0.1
186,869 - GFF184 0.54 +0.4
186,885 - GFF184 0.56 +0.2
186,907 + GFF184 0.60 -0.2
186,907 + GFF184 0.60 +0.3
186,915 - GFF184 0.62 +0.2
186,920 - GFF184 0.63 -1.0
187,019 + GFF184 0.80 -1.5
187,027 - GFF184 0.82 -0.6
187,034 + GFF184 0.83 -2.0
187,034 + GFF184 0.83 +1.2
187,042 - GFF184 0.84 -0.5
187,043 - GFF184 0.84 -0.5
187,305 + -0.6
187,305 + +0.6
187,305 + -0.5
187,305 + -1.0
187,313 - +0.1
187,344 + +0.4
187,344 + +0.5
187,352 - +1.1
187,358 - -0.0
187,358 - +0.1
187,359 + -1.0
187,398 + +0.5
187,406 + +0.2
187,464 + +0.0
187,472 - +0.7
187,473 + +0.2
187,492 + GFF185 0.11 +1.8
187,494 - GFF185 0.11 +0.1
187,504 - GFF185 0.12 -0.8
187,510 - GFF185 0.12 +1.8
187,534 + GFF185 0.14 +2.2
187,534 + GFF185 0.14 +0.2
187,548 - GFF185 0.15 +0.1
187,599 - GFF185 0.18 -0.5
187,614 + GFF185 0.19 -0.4
187,614 + GFF185 0.19 -0.9
187,622 - GFF185 0.19 -0.8
187,622 - GFF185 0.19 -0.6
187,622 - GFF185 0.19 +0.5
187,629 + GFF185 0.20 +1.3
187,637 - GFF185 0.20 -0.0
187,637 - GFF185 0.20 +0.8
187,639 - GFF185 0.20 +0.1
187,644 + GFF185 0.21 +0.2
187,644 + GFF185 0.21 +0.9
187,644 + GFF185 0.21 +0.0
187,651 + GFF185 0.21 +0.0
187,652 - GFF185 0.21 +0.0
187,652 - GFF185 0.21 -0.3
187,659 - GFF185 0.22 -0.3
187,696 + GFF185 0.24 +0.7
187,696 + GFF185 0.24 +1.4
187,704 - GFF185 0.24 +0.1
187,706 + GFF185 0.25 +0.1
187,714 - GFF185 0.25 -0.8
187,731 + GFF185 0.26 +1.0
187,749 - GFF185 0.27 +0.4
187,760 + GFF185 0.28 +0.6
187,768 - GFF185 0.28 -0.7
187,783 + GFF185 0.29 -0.8
187,785 + GFF185 0.30 -0.8
187,785 + GFF185 0.30 +0.3
187,785 + GFF185 0.30 +0.9
187,785 + GFF185 0.30 +1.3
187,785 + GFF185 0.30 +0.3
187,791 + GFF185 0.30 +1.4
187,793 - GFF185 0.30 +0.6
187,793 - GFF185 0.30 +0.8
187,793 - GFF185 0.30 -0.4
187,793 - GFF185 0.30 -0.0
187,793 - GFF185 0.30 +1.3
187,793 - GFF185 0.30 +0.8
187,793 - GFF185 0.30 -1.4
187,793 - GFF185 0.30 -0.7
187,793 - GFF185 0.30 -0.6
187,806 + GFF185 0.31 +0.0
187,812 + GFF185 0.31 +0.6
187,820 - GFF185 0.32 +0.1
187,820 - GFF185 0.32 +1.7
187,820 - GFF185 0.32 +1.2
187,850 + GFF185 0.34 +0.5
187,863 - GFF185 0.34 +0.4
187,919 - GFF185 0.38 -0.8
187,945 - GFF185 0.40 -1.2
187,954 + GFF185 0.40 -0.3
188,107 + GFF185 0.50 +0.1
188,116 - GFF185 0.50 +1.1

Or see this region's nucleotide sequence