Strain Fitness in Sphingobium sp. HT1-2 around GFF1759

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,787,500	+		GFF1758	0.47	-0.7
1,787,504	-		GFF1758	0.47	-0.2
1,787,515	+		GFF1758	0.48	-1.3
1,787,523	-		GFF1758	0.48	+1.3
1,787,523	-		GFF1758	0.48	-0.1
1,787,523	-		GFF1758	0.48	-0.8
1,787,527	-		GFF1758	0.49	-0.8
1,787,553	+		GFF1758	0.50	+0.2
1,787,565	-		GFF1758	0.51	+0.1
1,787,592	+		GFF1758	0.53	-0.5
1,787,592	+		GFF1758	0.53	-1.0
1,787,592	+		GFF1758	0.53	+0.5
1,787,592	+		GFF1758	0.53	+0.8
1,787,600	+		GFF1758	0.53	-1.3
1,787,600	+		GFF1758	0.53	+0.5
1,787,600	+		GFF1758	0.53	-0.6
1,787,600	+		GFF1758	0.53	+0.3
1,787,600	+		GFF1758	0.53	-0.5
1,787,600	-		GFF1758	0.53	+0.2
1,787,600	-		GFF1758	0.53	-0.6
1,787,602	+		GFF1758	0.53	-0.3
1,787,608	-		GFF1758	0.54	-0.3
1,787,608	-		GFF1758	0.54	+0.9
1,787,608	-		GFF1758	0.54	-0.0
1,787,610	+		GFF1758	0.54	-0.2
1,787,610	+		GFF1758	0.54	-0.2
1,787,618	-		GFF1758	0.54	-1.2
1,787,618	-		GFF1758	0.54	-1.5
1,787,626	-		GFF1758	0.55	-1.5
1,787,660	+		GFF1758	0.57	+1.4
1,787,660	+		GFF1758	0.57	-1.3
1,787,665	+		GFF1758	0.57	-1.2
1,787,665	+		GFF1758	0.57	+0.8
1,787,668	-		GFF1758	0.57	-0.6
1,787,668	-		GFF1758	0.57	-0.2
1,787,670	-		GFF1758	0.57	-0.8
1,787,693	-		GFF1758	0.59	-1.7
1,787,721	-		GFF1758	0.60	+0.2
1,787,721	-		GFF1758	0.60	-0.6
1,787,747	+		GFF1758	0.62	+0.1
1,787,752	+		GFF1758	0.62	+1.0
1,787,757	+		GFF1758	0.62	-1.9
1,787,767	+		GFF1758	0.63	-0.5
1,787,775	-		GFF1758	0.64	-1.3
1,787,785	+		GFF1758	0.64	+0.9
1,787,793	-		GFF1758	0.65	-0.2
1,787,835	-		GFF1758	0.67	+0.0
1,787,886	-		GFF1758	0.70	+0.7
1,787,896	+		GFF1758	0.71	-0.2
1,787,912	+		GFF1758	0.72	-1.0
1,787,920	-		GFF1758	0.72	-1.5
1,787,929	+		GFF1758	0.73	+0.4
1,787,929	+		GFF1758	0.73	-0.6
1,787,929	+		GFF1758	0.73	-1.3
1,787,929	+		GFF1758	0.73	-0.1
1,787,929	+		GFF1758	0.73	-0.1
1,787,937	+		GFF1758	0.73	+0.4
1,787,937	-		GFF1758	0.73	-0.4
1,787,937	-		GFF1758	0.73	+1.2
1,787,937	-		GFF1758	0.73	-0.1
1,787,937	-		GFF1758	0.73	-1.3
1,787,937	-		GFF1758	0.73	+0.5
1,787,937	-		GFF1758	0.73	+2.4
1,787,947	+		GFF1758	0.74	-0.3
1,787,947	+		GFF1758	0.74	-1.8
1,787,947	+		GFF1758	0.74	-1.2
1,787,955	-		GFF1758	0.74	-0.5
1,787,956	-		GFF1758	0.74	-0.1
1,787,963	-		GFF1758	0.75	-1.3
1,787,976	+		GFF1758	0.76	+0.5
1,788,062	+		GFF1758	0.81	-2.1
1,788,062	+		GFF1758	0.81	-0.9
1,788,064	+		GFF1758	0.81	+0.8
1,788,070	-		GFF1758	0.81	+0.3
1,788,070	-		GFF1758	0.81	+0.8
1,788,070	-		GFF1758	0.81	+0.1
1,788,123	-		GFF1758	0.84	+0.6
1,788,138	+		GFF1758	0.85	+1.5
1,788,146	-		GFF1758	0.86	-1.7
1,788,148	+		GFF1758	0.86	-0.6
1,788,170	+		GFF1758	0.87	+0.1
1,788,175	+		GFF1758	0.88	+1.7
1,788,175	+		GFF1758	0.88	+0.4
1,788,175	+		GFF1758	0.88	-0.0
1,788,175	+		GFF1758	0.88	-0.1
1,788,175	+		GFF1758	0.88	+1.3
1,788,175	+		GFF1758	0.88	+1.3
1,788,175	+		GFF1758	0.88	-1.7
1,788,183	-		GFF1758	0.88	+0.7
1,788,183	-		GFF1758	0.88	-0.3
1,788,183	-		GFF1758	0.88	-1.4
1,788,183	-		GFF1758	0.88	-0.6
1,788,183	-		GFF1758	0.88	-1.1
1,788,183	-		GFF1758	0.88	-0.3
1,788,184	-		GFF1758	0.88	+0.8
1,788,196	-		GFF1758	0.89	+0.0
1,788,209	+		GFF1758	0.90	+0.8
1,788,214	+		GFF1758	0.90	-1.1
1,788,217	-				-2.7
1,788,217	-				-0.7
1,788,217	-				+0.1
1,788,222	-				-1.2
1,788,245	-				-0.3
1,788,247	+				+0.3
1,788,260	-				+0.8
1,788,264	+				-0.2
1,788,264	+				-0.9
1,788,264	+				-0.5
1,788,264	+				+0.4
1,788,269	+				-1.1
1,788,272	-				-1.5
1,788,272	-				-0.1
1,788,272	-				+1.1
1,788,272	-				-0.3
1,788,272	-				-0.8
1,788,272	-				-0.5
1,788,277	-				+1.6
1,788,277	-				+0.6
1,788,348	-				-1.3
1,788,361	+				+0.5
1,788,371	+				+0.5
1,788,402	+				-1.0
1,788,402	+				+1.3
1,788,402	+				-0.1
1,788,402	+				-0.7
1,788,402	+				-0.1
1,788,410	-				-2.3
1,788,410	-				+1.1
1,788,410	-				-1.2
1,788,412	-				+0.2
1,788,414	+				-0.8
1,788,414	+				+0.5
1,788,414	+				+0.9
1,788,414	+				-0.1
1,788,415	+				-0.7
1,788,422	-				-0.8
1,788,422	-				-0.3
1,788,429	-				+0.9
1,788,446	+				-2.0
1,788,454	-				+0.7
1,788,454	-				-0.2
1,788,458	+				-0.7
1,788,469	+				-1.1
1,788,490	+				-1.4
1,788,494	-				-0.4
1,788,501	+				-0.5
1,788,504	-				-0.3
1,788,506	+				+0.1
1,788,506	+				-0.6
1,788,509	-				-0.5
1,788,514	-				-2.0
1,788,522	+				+0.1
1,788,530	-				-0.1
1,788,570	+				-0.0
1,788,572	+				+0.2
1,788,577	+				+0.5
1,788,584	-				-0.4
1,788,584	-				-0.7
1,788,587	+				-0.5
1,788,587	+				-1.3
1,788,599	+				-0.6
1,788,603	-				-0.0
1,788,606	+				-0.9
1,788,611	+				+0.4
1,788,611	+				+0.4
1,788,614	-				-0.1
1,788,616	+				-1.8
1,788,616	+				-0.5
1,788,621	+				-1.0
1,788,621	+				-0.3
1,788,624	-				-0.3
1,788,629	-				-1.0
1,788,629	-				+0.4
1,788,636	+		GFF1759	0.10	-0.8
1,788,636	+		GFF1759	0.10	+1.3
1,788,636	+		GFF1759	0.10	-0.8
1,788,636	+		GFF1759	0.10	-0.5
1,788,640	+		GFF1759	0.10	-1.7
1,788,644	-		GFF1759	0.11	-0.0
1,788,648	-		GFF1759	0.11	+0.8
1,788,648	-		GFF1759	0.11	-0.0
1,788,648	-		GFF1759	0.11	-0.8
1,788,648	-		GFF1759	0.11	-2.2
1,788,648	-		GFF1759	0.11	+0.4
1,788,648	-		GFF1759	0.11	-0.1
1,788,676	-		GFF1759	0.13	-1.2
1,788,700	+		GFF1759	0.15	-3.7
1,788,700	+		GFF1759	0.15	-0.4
1,788,700	+		GFF1759	0.15	-1.8
1,788,709	-		GFF1759	0.15	-0.1
1,788,724	-		GFF1759	0.17	+1.1
1,788,724	-		GFF1759	0.17	-1.4
1,788,761	-		GFF1759	0.19	+0.0
1,788,779	-		GFF1759	0.21	+0.4
1,788,794	-		GFF1759	0.22	-0.6
1,788,804	-		GFF1759	0.22	-1.4
1,788,819	+		GFF1759	0.24	-0.5
1,788,870	+		GFF1759	0.27	-1.2
1,788,877	+		GFF1759	0.28	-0.1
1,788,878	-		GFF1759	0.28	-1.9
1,788,910	-		GFF1759	0.30	-1.7
1,788,919	-		GFF1759	0.31	+0.2
1,788,938	-		GFF1759	0.32	+0.1
1,788,938	-		GFF1759	0.32	-0.7
1,788,955	+		GFF1759	0.34	+0.3
1,788,966	+		GFF1759	0.34	-1.3
1,788,986	-		GFF1759	0.36	-0.5
1,788,986	-		GFF1759	0.36	-0.1
1,789,061	+		GFF1759	0.41	-0.6
1,789,061	+		GFF1759	0.41	-1.5
1,789,069	-		GFF1759	0.42	-1.5
1,789,074	-		GFF1759	0.42	+0.6
1,789,086	+		GFF1759	0.43	-1.8
1,789,099	+		GFF1759	0.44	+0.2
1,789,103	+		GFF1759	0.44	-2.0
1,789,117	-		GFF1759	0.45	-0.4
1,789,126	+		GFF1759	0.46	-1.4
1,789,131	+		GFF1759	0.47	+0.6
1,789,133	-		GFF1759	0.47	-0.5
1,789,139	-		GFF1759	0.47	-0.2
1,789,172	+		GFF1759	0.50	-1.5
1,789,172	+		GFF1759	0.50	+0.2
1,789,180	-		GFF1759	0.50	+0.5
1,789,180	-		GFF1759	0.50	+0.8
1,789,180	-		GFF1759	0.50	-1.4
1,789,180	-		GFF1759	0.50	+1.4
1,789,180	-		GFF1759	0.50	-0.9
1,789,204	-		GFF1759	0.52	+0.6
1,789,246	+		GFF1759	0.55	-0.4
1,789,246	-		GFF1759	0.55	-1.4
1,789,271	+		GFF1759	0.57	-0.5
1,789,276	+		GFF1759	0.57	+0.7
1,789,279	-		GFF1759	0.57	+0.2
1,789,279	-		GFF1759	0.57	-0.1
1,789,291	-		GFF1759	0.58	+1.8
1,789,299	+		GFF1759	0.59	+0.9
1,789,315	-		GFF1759	0.60	-1.6
1,789,315	-		GFF1759	0.60	+1.0
1,789,339	-		GFF1759	0.62	-2.5
1,789,345	-		GFF1759	0.62	+0.9
1,789,423	-		GFF1759	0.68	-0.2
1,789,481	-		GFF1759	0.72	+1.6
1,789,484	-		GFF1759	0.72	+0.4
1,789,486	-		GFF1759	0.73	-0.4
1,789,486	-		GFF1759	0.73	+0.8
1,789,491	-		GFF1759	0.73	+0.2
1,789,492	-		GFF1759	0.73	+0.1
1,789,531	-		GFF1759	0.76	+0.7
1,789,538	+		GFF1759	0.76	-0.2
1,789,553	+		GFF1759	0.78	-0.3
1,789,553	+		GFF1759	0.78	+0.4
1,789,553	+		GFF1759	0.78	-1.8
1,789,554	+		GFF1759	0.78	-1.2
1,789,558	+		GFF1759	0.78	+1.2
1,789,558	+		GFF1759	0.78	+0.3
1,789,561	-		GFF1759	0.78	-2.1
1,789,566	-		GFF1759	0.79	-0.6
1,789,569	+		GFF1759	0.79	-0.7
1,789,574	+		GFF1759	0.79	+0.3
1,789,577	-		GFF1759	0.79	+0.6
1,789,582	-		GFF1759	0.80	-0.5
1,789,592	+		GFF1759	0.80	-1.4
1,789,600	-		GFF1759	0.81	-0.3
1,789,600	-		GFF1759	0.81	-0.1
1,789,616	+		GFF1759	0.82	+0.8
1,789,616	+		GFF1759	0.82	-0.8
1,789,624	-		GFF1759	0.83	+0.2
1,789,631	-		GFF1759	0.83	+0.3
1,789,641	-		GFF1759	0.84	-0.8
1,789,675	+		GFF1759	0.87	-1.8
1,789,698	+		GFF1759	0.88	-0.6
1,789,706	-		GFF1759	0.89	+1.1
1,789,708	+		GFF1759	0.89	+0.3
1,789,716	-		GFF1759	0.90	-1.3
1,789,717	+		GFF1759	0.90	-0.7
1,789,740	+				-2.3
1,789,775	+				+0.9
1,789,775	+				-0.6
1,789,780	+				-1.5
1,789,780	+				-0.8
1,789,780	+				-0.8
1,789,817	-				-0.5
1,789,845	+				-0.0
1,789,903	+				+0.0
1,789,912	+				-0.6
1,789,923	+				+0.6
1,789,931	-				-0.3
1,789,936	+				-0.3
1,789,936	+				-1.1
1,789,944	-				-1.1
1,789,954	-				+0.3
1,789,954	-				+0.2
1,789,980	+				+0.5
1,789,991	+				-1.7
1,790,027	-				+1.3
1,790,033	-				-1.1
1,790,033	-				+0.7
1,790,035	+				+0.1
1,790,040	+				+0.4
1,790,043	-				-0.4
1,790,052	+				-0.5
1,790,068	+				+0.4
1,790,084	-				+0.9
1,790,124	-				-0.8
1,790,126	-				-0.7
1,790,126	-				-0.7
1,790,128	+				-2.3
1,790,128	+				+1.3
1,790,130	+				-0.4
1,790,130	+				-0.9
1,790,130	+				+0.6
1,790,175	-				-1.9
1,790,218	+		GFF1760	0.12	-1.1
1,790,223	-		GFF1760	0.13	-0.3
1,790,226	-		GFF1760	0.13	-0.9
1,790,226	-		GFF1760	0.13	+2.0
1,790,232	+		GFF1760	0.14	-1.8
1,790,328	-		GFF1760	0.27	+0.0
1,790,332	-		GFF1760	0.28	-0.5
1,790,367	+		GFF1760	0.33	-0.3
1,790,367	+		GFF1760	0.33	-1.3
1,790,400	-		GFF1760	0.37	-0.3
1,790,404	+		GFF1760	0.38	+1.9
1,790,404	+		GFF1760	0.38	-1.6
1,790,404	+		GFF1760	0.38	+1.5
1,790,412	-		GFF1760	0.39	-1.3
1,790,419	-		GFF1760	0.40	+0.2
1,790,420	+		GFF1760	0.40	+0.2
1,790,428	-		GFF1760	0.41	-0.1
1,790,446	+		GFF1760	0.43	-0.3
1,790,451	+		GFF1760	0.44	+0.7
1,790,451	+		GFF1760	0.44	+0.7
1,790,451	+		GFF1760	0.44	-0.7
1,790,451	+		GFF1760	0.44	-1.2
1,790,454	-		GFF1760	0.45	-0.2
1,790,454	-		GFF1760	0.45	+0.9
1,790,459	-		GFF1760	0.45	+1.4
1,790,459	-		GFF1760	0.45	-0.5
1,790,459	-		GFF1760	0.45	+0.5
1,790,459	-		GFF1760	0.45	+0.4
1,790,469	-		GFF1760	0.47	-1.1
1,790,496	+		GFF1760	0.50	-0.0
1,790,496	+		GFF1760	0.50	-1.2
1,790,496	+		GFF1760	0.50	-0.3
1,790,496	+		GFF1760	0.50	-1.1
1,790,504	-		GFF1760	0.51	-1.5
1,790,504	-		GFF1760	0.51	+1.1
1,790,506	+		GFF1760	0.52	+0.9
1,790,506	+		GFF1760	0.52	-0.7
1,790,506	+		GFF1760	0.52	-0.4
1,790,506	+		GFF1760	0.52	-0.3
1,790,506	+		GFF1760	0.52	-0.8
1,790,506	+		GFF1760	0.52	+0.0
1,790,506	+		GFF1760	0.52	+0.7
1,790,506	+		GFF1760	0.52	+1.0
1,790,506	+		GFF1760	0.52	+0.7
1,790,506	+		GFF1760	0.52	+0.0
1,790,506	+		GFF1760	0.52	-0.8
1,790,508	-		GFF1760	0.52	-0.8
1,790,514	-		GFF1760	0.53	-0.3
1,790,514	-		GFF1760	0.53	-1.8
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