Strain Fitness in Sphingobium sp. HT1-2 around GFF1753

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,780,522	+		GFF1752	0.56	+0.3
1,780,525	-		GFF1752	0.56	-1.1
1,780,535	-		GFF1752	0.56	+0.0
1,780,585	+		GFF1752	0.59	-1.2
1,780,585	+		GFF1752	0.59	+1.2
1,780,589	-		GFF1752	0.59	-2.2
1,780,593	-		GFF1752	0.59	-0.1
1,780,593	-		GFF1752	0.59	-0.6
1,780,600	+		GFF1752	0.60	-0.3
1,780,616	+		GFF1752	0.60	-0.2
1,780,621	+		GFF1752	0.61	-0.6
1,780,624	-		GFF1752	0.61	-0.6
1,780,661	-		GFF1752	0.63	+0.4
1,780,684	+		GFF1752	0.64	+0.1
1,780,692	-		GFF1752	0.64	-0.2
1,780,702	-		GFF1752	0.65	-1.1
1,780,717	-		GFF1752	0.65	+0.7
1,780,729	+		GFF1752	0.66	+0.3
1,780,729	+		GFF1752	0.66	+0.0
1,780,736	-		GFF1752	0.66	-1.1
1,780,746	-		GFF1752	0.67	+0.2
1,780,747	-		GFF1752	0.67	-0.1
1,780,759	-		GFF1752	0.68	-0.3
1,780,764	+		GFF1752	0.68	+0.5
1,780,764	+		GFF1752	0.68	-0.7
1,780,769	+		GFF1752	0.68	+0.2
1,780,779	+		GFF1752	0.69	+0.2
1,780,779	+		GFF1752	0.69	-0.5
1,780,779	+		GFF1752	0.69	+0.1
1,780,779	+		GFF1752	0.69	-0.5
1,780,787	-		GFF1752	0.69	+0.8
1,780,787	-		GFF1752	0.69	-0.8
1,780,787	-		GFF1752	0.69	-0.4
1,780,808	-		GFF1752	0.70	-1.8
1,780,810	-		GFF1752	0.70	+1.1
1,780,837	+		GFF1752	0.72	+1.5
1,780,837	+		GFF1752	0.72	-0.1
1,780,844	-		GFF1752	0.72	-1.8
1,780,845	-		GFF1752	0.72	-1.2
1,780,845	-		GFF1752	0.72	+0.0
1,780,845	-		GFF1752	0.72	-1.9
1,780,845	-		GFF1752	0.72	+0.2
1,780,847	+		GFF1752	0.72	-0.6
1,780,861	+		GFF1752	0.73	+0.5
1,780,861	+		GFF1752	0.73	-0.4
1,780,861	+		GFF1752	0.73	-1.7
1,780,869	-		GFF1752	0.73	-0.6
1,780,869	-		GFF1752	0.73	-1.5
1,780,871	+		GFF1752	0.73	-0.0
1,780,889	-		GFF1752	0.74	+1.9
1,780,894	+		GFF1752	0.74	+1.1
1,780,947	-		GFF1752	0.77	+0.4
1,780,972	+		GFF1752	0.78	-1.9
1,780,972	+		GFF1752	0.78	-0.7
1,781,041	+		GFF1752	0.82	-1.0
1,781,051	+		GFF1752	0.82	+0.1
1,781,059	-		GFF1752	0.83	-0.6
1,781,059	-		GFF1752	0.83	-0.7
1,781,059	-		GFF1752	0.83	+0.4
1,781,081	+		GFF1752	0.84	-1.8
1,781,083	+		GFF1752	0.84	+0.5
1,781,083	+		GFF1752	0.84	-0.3
1,781,089	-		GFF1752	0.84	+0.4
1,781,089	-		GFF1752	0.84	-1.0
1,781,091	-		GFF1752	0.84	+0.0
1,781,091	-		GFF1752	0.84	-1.1
1,781,091	-		GFF1752	0.84	+0.1
1,781,107	-		GFF1752	0.85	-1.2
1,781,118	+		GFF1752	0.86	-1.3
1,781,126	-		GFF1752	0.86	-0.3
1,781,126	-		GFF1752	0.86	-0.6
1,781,128	+		GFF1752	0.86	-1.5
1,781,133	+		GFF1752	0.86	+0.2
1,781,133	+		GFF1752	0.86	-1.1
1,781,136	-		GFF1752	0.87	+1.5
1,781,136	-		GFF1752	0.87	-2.2
1,781,138	+		GFF1752	0.87	-0.3
1,781,156	-		GFF1752	0.88	+1.1
1,781,161	-		GFF1752	0.88	-1.0
1,781,161	-		GFF1752	0.88	-1.4
1,781,161	-		GFF1752	0.88	-1.3
1,781,163	+		GFF1752	0.88	-0.5
1,781,163	+		GFF1752	0.88	-0.5
1,781,174	+		GFF1752	0.89	-0.8
1,781,178	+		GFF1752	0.89	+0.8
1,781,201	-		GFF1752	0.90	-0.0
1,781,216	+				+0.8
1,781,216	+				-2.2
1,781,216	+				-0.5
1,781,219	-				-2.5
1,781,219	-				-0.3
1,781,221	+				-0.3
1,781,221	+				+0.6
1,781,224	-				-1.5
1,781,224	-				+0.9
1,781,224	-				+0.0
1,781,224	-				-1.5
1,781,224	-				-1.1
1,781,224	-				-0.6
1,781,224	-				+0.3
1,781,224	-				+1.0
1,781,224	-				+1.2
1,781,229	-				-0.8
1,781,229	-				-0.3
1,781,229	-				-0.5
1,781,229	-				+0.2
1,781,229	-				-0.1
1,781,229	-				-0.5
1,781,229	-				-0.1
1,781,262	-				+1.3
1,781,271	+				-1.0
1,781,302	-				-1.9
1,781,324	-				+0.1
1,781,329	-				-0.4
1,781,343	+				+0.3
1,781,348	+				+0.2
1,781,348	+				+0.1
1,781,401	-				-1.1
1,781,527	+				-0.9
1,781,535	-				+0.9
1,781,538	-				-0.1
1,781,545	-				-0.0
1,781,587	+				-1.1
1,781,596	+				+1.1
1,781,599	-				-0.4
1,781,637	+		GFF1753	0.13	+0.4
1,781,656	+		GFF1753	0.15	-1.1
1,781,660	+		GFF1753	0.16	-0.8
1,781,660	+		GFF1753	0.16	+0.5
1,781,660	+		GFF1753	0.16	-0.8
1,781,660	+		GFF1753	0.16	+0.1
1,781,664	-		GFF1753	0.16	-0.1
1,781,665	+		GFF1753	0.16	-0.3
1,781,665	+		GFF1753	0.16	-1.7
1,781,668	-		GFF1753	0.17	-0.0
1,781,668	-		GFF1753	0.17	+0.6
1,781,689	+		GFF1753	0.19	-0.5
1,781,692	+		GFF1753	0.19	+0.8
1,781,704	+		GFF1753	0.21	-1.8
1,781,704	+		GFF1753	0.21	-1.1
1,781,704	+		GFF1753	0.21	+0.9
1,781,704	+		GFF1753	0.21	-0.1
1,781,704	+		GFF1753	0.21	-0.5
1,781,704	+		GFF1753	0.21	-0.9
1,781,712	-		GFF1753	0.22	+0.8
1,781,712	-		GFF1753	0.22	-0.6
1,781,712	-		GFF1753	0.22	-1.1
1,781,712	-		GFF1753	0.22	-0.1
1,781,712	-		GFF1753	0.22	-1.3
1,781,719	+		GFF1753	0.22	-2.6
1,781,727	-		GFF1753	0.23	+0.3
1,781,749	+		GFF1753	0.26	-1.5
1,781,749	+		GFF1753	0.26	-0.1
1,781,757	-		GFF1753	0.27	-0.2
1,781,772	+		GFF1753	0.28	-1.8
1,781,778	+		GFF1753	0.29	-0.0
1,781,780	-		GFF1753	0.29	-1.1
1,781,783	+		GFF1753	0.30	-2.0
1,781,858	+		GFF1753	0.38	+0.6
1,781,858	+		GFF1753	0.38	-0.1
1,781,858	+		GFF1753	0.38	+0.8
1,781,862	-		GFF1753	0.39	-1.8
1,781,863	+		GFF1753	0.39	-1.1
1,781,863	+		GFF1753	0.39	-0.1
1,781,866	-		GFF1753	0.39	-2.1
1,781,866	-		GFF1753	0.39	+0.4
1,781,870	+		GFF1753	0.40	+1.2
1,781,910	+		GFF1753	0.44	-1.1
1,781,911	+		GFF1753	0.44	-0.2
1,781,911	+		GFF1753	0.44	+0.9
1,781,911	+		GFF1753	0.44	+0.7
1,781,943	-		GFF1753	0.48	+0.4
1,781,951	+		GFF1753	0.49	+0.5
1,781,958	+		GFF1753	0.49	-0.3
1,781,970	+		GFF1753	0.51	-0.8
1,781,976	-		GFF1753	0.52	+0.8
1,781,986	+		GFF1753	0.53	-1.6
1,781,998	+		GFF1753	0.54	+1.0
1,781,999	-		GFF1753	0.54	-1.3
1,782,001	-		GFF1753	0.54	-0.5
1,782,057	+		GFF1753	0.61	+0.1
1,782,093	+		GFF1753	0.65	-1.0
1,782,098	-		GFF1753	0.65	+0.2
1,782,105	-		GFF1753	0.66	-1.8
1,782,110	-		GFF1753	0.67	-2.1
1,782,122	-		GFF1753	0.68	-1.6
1,782,136	+		GFF1753	0.70	+0.6
1,782,149	+		GFF1753	0.71	+0.4
1,782,182	+		GFF1753	0.75	+1.0
1,782,182	+		GFF1753	0.75	-1.0
1,782,182	+		GFF1753	0.75	-2.0
1,782,185	-		GFF1753	0.75	-1.1
1,782,190	-		GFF1753	0.76	-2.0
1,782,190	-		GFF1753	0.76	-1.8
1,782,190	-		GFF1753	0.76	-2.0
1,782,190	-		GFF1753	0.76	-1.2
1,782,190	-		GFF1753	0.76	-0.3
1,782,190	-		GFF1753	0.76	-0.5
1,782,192	+		GFF1753	0.76	+0.8
1,782,227	-		GFF1753	0.80	-0.4
1,782,229	+		GFF1753	0.80	-0.3
1,782,237	-		GFF1753	0.81	+0.7
1,782,239	+		GFF1753	0.81	-0.7
1,782,239	+		GFF1753	0.81	-1.8
1,782,239	+		GFF1753	0.81	+0.6
1,782,239	+		GFF1753	0.81	-1.1
1,782,239	+		GFF1753	0.81	+0.9
1,782,239	+		GFF1753	0.81	-0.2
1,782,244	+		GFF1753	0.82	-0.4
1,782,244	+		GFF1753	0.82	+1.7
1,782,247	-		GFF1753	0.82	-1.5
1,782,247	-		GFF1753	0.82	-0.3
1,782,247	-		GFF1753	0.82	+0.6
1,782,247	-		GFF1753	0.82	-0.6
1,782,251	+		GFF1753	0.83	+0.5
1,782,252	-		GFF1753	0.83	+1.6
1,782,265	+		GFF1753	0.84	+0.0
1,782,308	+		GFF1753	0.89	-0.3
1,782,451	+				+0.4
1,782,459	-				+1.5
1,782,459	-				-0.1
1,782,502	+				-0.5
1,782,502	+				-0.3
1,782,507	+		GFF1754	0.10	+0.6
1,782,507	+		GFF1754	0.10	-1.4
1,782,507	+		GFF1754	0.10	+0.6
1,782,507	+		GFF1754	0.10	-2.1
1,782,507	+		GFF1754	0.10	+1.4
1,782,507	+		GFF1754	0.10	+0.5
1,782,507	+		GFF1754	0.10	-2.1
1,782,507	+		GFF1754	0.10	-0.9
1,782,507	+		GFF1754	0.10	+0.1
1,782,507	+		GFF1754	0.10	+1.5
1,782,507	+		GFF1754	0.10	+0.5
1,782,507	+		GFF1754	0.10	+0.0
1,782,515	-		GFF1754	0.11	-0.5
1,782,515	-		GFF1754	0.11	+0.3
1,782,515	-		GFF1754	0.11	-1.3
1,782,515	-		GFF1754	0.11	+0.5
1,782,515	-		GFF1754	0.11	+0.8
1,782,515	-		GFF1754	0.11	-0.9
1,782,515	-		GFF1754	0.11	+1.6
1,782,515	-		GFF1754	0.11	-1.3
1,782,515	-		GFF1754	0.11	+0.5
1,782,561	+		GFF1754	0.16	+0.4
1,782,569	-		GFF1754	0.17	-1.4
1,782,580	+		GFF1754	0.18	-0.5
1,782,580	+		GFF1754	0.18	+1.0
1,782,580	+		GFF1754	0.18	+0.8
1,782,600	+		GFF1754	0.20	+0.0
1,782,600	+		GFF1754	0.20	+1.2
1,782,659	+		GFF1754	0.26	+1.8
1,782,659	+		GFF1754	0.26	-1.4
1,782,659	+		GFF1754	0.26	+0.3
1,782,667	-		GFF1754	0.27	+0.0
1,782,667	-		GFF1754	0.27	-0.5
1,782,688	+		GFF1754	0.29	-0.3
1,782,697	+		GFF1754	0.30	+0.5
1,782,705	-		GFF1754	0.31	+0.2
1,782,739	+		GFF1754	0.35	+0.5
1,782,762	+		GFF1754	0.37	+0.5
1,782,767	+		GFF1754	0.38	-0.7
1,782,770	-		GFF1754	0.38	+0.2
1,782,775	-		GFF1754	0.39	-2.3
1,782,859	+		GFF1754	0.48	+0.3
1,782,859	+		GFF1754	0.48	-0.9
1,782,859	+		GFF1754	0.48	-0.1
1,782,859	+		GFF1754	0.48	-0.3
1,782,864	+		GFF1754	0.48	-1.1
1,782,867	-		GFF1754	0.49	+1.4
1,782,876	+		GFF1754	0.50	+1.1
1,782,884	-		GFF1754	0.51	+0.3
1,782,899	-		GFF1754	0.52	+1.0
1,782,965	-		GFF1754	0.59	-0.9
1,782,969	+		GFF1754	0.60	+0.4
1,782,976	+		GFF1754	0.60	+0.4
1,782,977	-		GFF1754	0.61	-0.7
1,782,989	-		GFF1754	0.62	+0.1
1,782,989	-		GFF1754	0.62	-0.5
1,783,002	+		GFF1754	0.63	-0.9
1,783,002	+		GFF1754	0.63	-1.1
1,783,003	-		GFF1754	0.63	+0.7
1,783,015	+		GFF1754	0.65	-1.9
1,783,021	+		GFF1754	0.65	-3.1
1,783,029	-		GFF1754	0.66	-0.4
1,783,085	+		GFF1754	0.72	-0.3
1,783,089	-		GFF1754	0.73	-0.7
1,783,105	+		GFF1754	0.74	-0.9
1,783,124	+		GFF1754	0.76	+1.0
1,783,152	+		GFF1754	0.79	+0.5
1,783,160	-		GFF1754	0.80	-1.4
1,783,162	+		GFF1754	0.80	+1.3
1,783,165	-		GFF1754	0.81	-1.5
1,783,165	-		GFF1754	0.81	+0.4
1,783,183	+		GFF1754	0.83	+0.2
1,783,193	+		GFF1754	0.84	-0.3
1,783,193	+		GFF1754	0.84	+0.0
1,783,202	+		GFF1754	0.85	+0.5
1,783,233	-		GFF1754	0.88	+0.4
1,783,240	+		GFF1754	0.89	-1.6
1,783,245	+		GFF1754	0.89	+0.0
1,783,248	-		GFF1754	0.90	-1.1
1,783,248	-		GFF1754	0.90	+0.3
1,783,253	-				-0.2
1,783,253	-				-0.2
1,783,253	-				-0.2
1,783,317	+				-0.8
1,783,325	-				-0.7
1,783,325	-				+0.4
1,783,330	+				+0.4
1,783,338	-				+0.6
1,783,357	+				+0.4