Strain Fitness in Sphingobium sp. HT1-2 around GFF1686

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,711,225	+				-0.2
1,711,235	+		GFF1684	0.18	-1.1
1,711,245	+		GFF1684	0.29	-1.1
1,711,282	-		GFF1684	0.69	-0.1
1,711,320	+				+0.4
1,711,328	-				-0.6
1,711,328	-				-0.2
1,711,328	-				+0.5
1,711,328	-				+0.3
1,711,328	-				-0.7
1,711,328	-				-0.9
1,711,335	+				+0.0
1,711,335	+				-2.6
1,711,343	-				+0.5
1,711,343	-				-0.5
1,711,343	-				-2.1
1,711,343	-				-2.4
1,711,343	-				-0.1
1,711,343	-				-1.6
1,711,350	+				-1.7
1,711,404	-				+0.9
1,711,427	+				+0.4
1,711,427	+				+0.5
1,711,427	+				-2.1
1,711,429	+				-0.2
1,711,429	+				-0.5
1,711,435	-				-0.1
1,711,435	-				+1.0
1,711,437	-				-0.3
1,711,437	-				-2.9
1,711,446	+				-0.1
1,711,446	+				+1.6
1,711,454	-				-0.2
1,711,455	-				-1.2
1,711,460	+				+0.2
1,711,466	+				-0.3
1,711,466	+				+0.6
1,711,466	+				+0.3
1,711,466	+				-0.1
1,711,466	+				-1.2
1,711,466	+				+0.1
1,711,466	+				+0.7
1,711,466	+				+1.0
1,711,466	+				+0.2
1,711,466	+				-0.7
1,711,466	+				+0.3
1,711,466	+				+0.3
1,711,466	+				+1.0
1,711,466	+				-0.6
1,711,466	+				-1.1
1,711,471	+				+0.6
1,711,471	+				-1.7
1,711,474	-				-0.2
1,711,474	-				-0.3
1,711,474	-				-0.1
1,711,474	-				-2.3
1,711,474	-				-1.3
1,711,474	-				-1.1
1,711,474	-				-1.5
1,711,474	-				-1.8
1,711,474	-				+0.5
1,711,474	-				+1.1
1,711,474	-				-1.7
1,711,474	-				-0.5
1,711,474	-				-0.4
1,711,474	-				-1.2
1,711,474	-				+0.3
1,711,474	-				+0.7
1,711,474	-				-1.8
1,711,474	-				-0.7
1,711,476	+				+0.3
1,711,476	+				-0.7
1,711,479	-				+0.2
1,711,484	-				+0.2
1,711,499	+				-0.8
1,711,507	-				+0.9
1,711,525	-		GFF1685	0.12	-0.4
1,711,526	-		GFF1685	0.12	+0.5
1,711,569	-		GFF1685	0.20	-1.5
1,711,594	-		GFF1685	0.25	-0.8
1,711,608	+		GFF1685	0.27	+0.9
1,711,631	+		GFF1685	0.31	+0.7
1,711,636	+		GFF1685	0.32	+0.7
1,711,638	+		GFF1685	0.33	-2.6
1,711,639	-		GFF1685	0.33	-1.0
1,711,649	+		GFF1685	0.35	+1.0
1,711,657	-		GFF1685	0.36	-0.9
1,711,657	-		GFF1685	0.36	-0.2
1,711,682	+		GFF1685	0.41	-0.5
1,711,707	+		GFF1685	0.45	+0.0
1,711,713	+		GFF1685	0.46	+0.1
1,711,736	-		GFF1685	0.50	+0.8
1,711,750	-		GFF1685	0.53	+1.0
1,711,752	+		GFF1685	0.53	-0.2
1,711,757	+		GFF1685	0.54	-0.0
1,711,760	-		GFF1685	0.55	+0.5
1,711,765	-		GFF1685	0.56	-1.4
1,711,769	-		GFF1685	0.56	-0.1
1,711,769	-		GFF1685	0.56	-1.9
1,711,769	-		GFF1685	0.56	-0.1
1,711,785	+		GFF1685	0.59	-0.7
1,711,791	-		GFF1685	0.60	+0.1
1,711,795	+		GFF1685	0.61	-0.1
1,711,798	-		GFF1685	0.62	+0.4
1,711,814	-		GFF1685	0.65	-0.3
1,711,821	+		GFF1685	0.66	+0.3
1,711,863	+		GFF1685	0.74	-1.1
1,711,870	-		GFF1685	0.75	+1.0
1,711,871	-		GFF1685	0.75	+0.3
1,711,892	+		GFF1685	0.79	+0.3
1,711,900	-		GFF1685	0.80	-0.4
1,711,901	-		GFF1685	0.81	+0.1
1,711,908	-		GFF1685	0.82	-0.1
1,711,922	-		GFF1685	0.84	-1.0
1,711,968	+				-0.1
1,711,969	+				-1.9
1,711,970	+				-1.5
1,711,989	+				-0.7
1,711,997	-				-0.7
1,711,997	-				-1.9
1,711,997	-				+0.9
1,712,017	+				+0.3
1,712,017	-				-0.3
1,712,068	+				+0.5
1,712,076	-				-1.3
1,712,093	+				-1.2
1,712,108	-				+0.4
1,712,162	+				-0.0
1,712,162	-				-0.6
1,712,181	-				-1.1
1,712,245	-		GFF1686	0.22	-2.0
1,712,245	-		GFF1686	0.22	+0.5
1,712,250	-		GFF1686	0.23	-0.7
1,712,295	-		GFF1686	0.35	-0.9
1,712,301	-		GFF1686	0.37	-0.7
1,712,365	-		GFF1686	0.54	-0.4
1,712,399	+		GFF1686	0.63	-0.5
1,712,407	-		GFF1686	0.65	+0.6
1,712,407	-		GFF1686	0.65	-1.2
1,712,408	+		GFF1686	0.65	-1.4
1,712,417	+		GFF1686	0.67	-0.5
1,712,428	+		GFF1686	0.70	-0.9
1,712,431	-		GFF1686	0.71	-0.8
1,712,436	-		GFF1686	0.73	-0.1
1,712,449	+		GFF1686	0.76	+0.8
1,712,449	+		GFF1686	0.76	-0.6
1,712,451	-		GFF1686	0.77	-0.2
1,712,457	-		GFF1686	0.78	-0.7
1,712,479	-		GFF1686	0.84	-0.1
1,712,479	-		GFF1686	0.84	-1.7
1,712,481	+		GFF1686	0.85	+0.2
1,712,489	-		GFF1686	0.87	-1.4
1,712,506	+				-0.2
1,712,506	+				-0.5
1,712,514	-				-0.0
1,712,528	+				+0.4
1,712,538	-				+0.3
1,712,540	+				+0.0
1,712,543	-				+0.7
1,712,545	+				-0.3
1,712,549	+				+0.5
1,712,555	-				+0.0
1,712,596	+				-0.3
1,712,596	+				+0.5
1,712,596	+				-1.1
1,712,604	-				-2.4
1,712,604	-				+0.1
1,712,604	-				-0.7
1,712,609	-				+0.7
1,712,609	-				-1.0
1,712,609	-				+0.4
1,712,609	-				-0.1
1,712,609	-				-0.4
1,712,615	+				-0.4
1,712,618	+				-0.5
1,712,618	+				-0.9
1,712,618	+				-0.4
1,712,626	-				-0.1
1,712,626	-				-0.7
1,712,626	-				-0.0
1,712,636	-		GFF1687	0.13	+0.5
1,712,636	-		GFF1687	0.13	-1.8
1,712,642	+		GFF1687	0.15	-0.4
1,712,642	+		GFF1687	0.15	-0.8
1,712,650	-		GFF1687	0.19	-2.7
1,712,650	-		GFF1687	0.19	-0.1
1,712,658	+		GFF1687	0.22	+0.1
1,712,666	-		GFF1687	0.25	-0.6
1,712,671	-		GFF1687	0.27	-0.4
1,712,693	-		GFF1687	0.36	-1.9
1,712,693	-		GFF1687	0.36	-1.0
1,712,699	+		GFF1687	0.38	-2.4
1,712,707	-		GFF1687	0.41	+1.1
1,712,707	-		GFF1687	0.41	-0.0
1,712,707	-		GFF1687	0.41	+0.4
1,712,728	+		GFF1687	0.50	-0.5
1,712,728	+		GFF1687	0.50	+0.4
1,712,736	-		GFF1687	0.53	+1.0
1,712,741	-		GFF1687	0.55	-2.0
1,712,746	-		GFF1687	0.57	-0.1
1,712,792	+		GFF1687	0.75	-1.8
1,712,796	-		GFF1687	0.77	-0.2
1,712,800	-		GFF1687	0.78	+0.8
1,712,856	+				+0.7
1,712,866	+				-0.9
1,712,866	-				-1.8
1,712,903	+				+0.7
1,712,903	+				-1.2
1,712,903	+				-0.3
1,712,903	+				-1.2
1,712,908	+				-0.3
1,712,911	-				-1.3
1,712,916	-				-1.4
1,713,006	-		GFF1688	0.28	-1.8
1,713,016	-		GFF1688	0.34	-1.0
1,713,041	+		GFF1688	0.49	-0.8
1,713,052	+		GFF1688	0.56	-0.7
1,713,052	+		GFF1688	0.56	-1.4
1,713,052	+		GFF1688	0.56	-0.5
1,713,052	+		GFF1688	0.56	-1.2
1,713,060	-		GFF1688	0.61	+0.1
1,713,060	-		GFF1688	0.61	-1.9
1,713,060	-		GFF1688	0.61	-2.6
1,713,060	-		GFF1688	0.61	-0.5
1,713,060	-		GFF1688	0.61	+0.0
1,713,060	-		GFF1688	0.61	-0.4
1,713,063	+		GFF1688	0.62	-1.4
1,713,069	-		GFF1688	0.66	-0.1
1,713,069	-		GFF1688	0.66	-0.3
1,713,071	-		GFF1688	0.67	-0.7
1,713,071	-		GFF1688	0.67	-0.5
1,713,071	-		GFF1688	0.67	-1.9
1,713,071	-		GFF1688	0.67	-0.7
1,713,085	+		GFF1688	0.76	+1.0
1,713,091	+		GFF1688	0.79	-0.7
1,713,092	-		GFF1688	0.80	+0.1
1,713,093	-		GFF1688	0.81	-1.5
1,713,094	-		GFF1688	0.81	-1.9
1,713,104	+		GFF1688	0.87	+0.5
1,713,112	+				-3.4
1,713,117	+				-1.0
1,713,118	-				-0.5
1,713,125	-				-0.8
1,713,130	-				+1.1
1,713,143	-				+0.3
1,713,155	+				+0.1
1,713,167	-		GFF1689	0.12	+0.3
1,713,167	-		GFF1689	0.12	-2.0
1,713,179	+		GFF1689	0.21	+0.4
1,713,197	-		GFF1689	0.35	+0.5
1,713,212	+		GFF1689	0.47	+0.5
1,713,222	+		GFF1689	0.54	-0.5
1,713,230	-		GFF1689	0.60	+0.5
1,713,230	-		GFF1689	0.60	+0.6
1,713,232	+		GFF1689	0.62	-1.0
1,713,235	-		GFF1689	0.64	-0.2
1,713,244	+		GFF1689	0.71	-0.3
1,713,244	+		GFF1689	0.71	+0.2
1,713,244	+		GFF1689	0.71	-0.9
1,713,250	-		GFF1689	0.76	-0.7
1,713,252	-		GFF1689	0.78	-1.5
1,713,252	-		GFF1689	0.78	+0.4
1,713,252	-		GFF1689	0.78	+1.5
1,713,252	-		GFF1689	0.78	-0.7
1,713,252	-		GFF1689	0.78	-0.6
1,713,257	+		GFF1689	0.81	-0.2
1,713,275	-				-0.8
1,713,276	-				-1.1
1,713,281	-				-2.1
1,713,281	-				-0.9
1,713,287	-				+0.8
1,713,304	-				-0.7
1,713,304	-				-1.5
1,713,314	+				-0.1
1,713,334	+				+0.9
1,713,342	-				-3.4
1,713,344	-				+1.0
1,713,344	-				-1.7
1,713,359	-				-0.8
1,713,360	+				+0.8
1,713,365	+				-0.4
1,713,370	+				-1.8
1,713,370	+				-0.8
1,713,370	+				-0.3
1,713,370	+				+0.6
1,713,370	+				+0.1
1,713,370	+				-0.9
1,713,370	+				+0.7
1,713,370	+				-1.0
1,713,370	+				+0.3
1,713,370	+				+0.8
1,713,370	+				-0.3
1,713,370	+				-0.9
1,713,378	-				+0.6
1,713,378	-				+0.6
1,713,378	-				+0.2
1,713,378	-				+0.1
1,713,378	-				-0.4
1,713,380	-				-1.5
1,713,380	-				-0.6
1,713,401	-		GFF1690	0.11	-0.6
1,713,401	-		GFF1690	0.11	-2.8
1,713,444	-		GFF1690	0.15	-1.9
1,713,468	-		GFF1690	0.17	-0.6
1,713,484	+		GFF1690	0.18	-1.0
1,713,508	-		GFF1690	0.20	+0.2
1,713,508	-		GFF1690	0.20	+1.2
1,713,517	+		GFF1690	0.21	+0.5