Strain Fitness in Sphingobium sp. HT1-2 around GFF1665

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,693,358	+		GFF1664	0.21	-0.7
1,693,363	+		GFF1664	0.22	-1.1
1,693,363	+		GFF1664	0.22	-1.3
1,693,363	+		GFF1664	0.22	-1.1
1,693,363	+		GFF1664	0.22	+0.2
1,693,363	+		GFF1664	0.22	-0.5
1,693,363	+		GFF1664	0.22	-0.9
1,693,363	+		GFF1664	0.22	+1.1
1,693,363	+		GFF1664	0.22	-1.2
1,693,364	-		GFF1664	0.22	-2.5
1,693,366	-		GFF1664	0.22	+1.0
1,693,366	-		GFF1664	0.22	+1.0
1,693,371	-		GFF1664	0.23	-1.8
1,693,371	-		GFF1664	0.23	+0.9
1,693,371	-		GFF1664	0.23	-0.7
1,693,397	+		GFF1664	0.25	-1.3
1,693,397	+		GFF1664	0.25	+0.3
1,693,397	+		GFF1664	0.25	+0.8
1,693,397	+		GFF1664	0.25	+0.5
1,693,405	-		GFF1664	0.26	-1.2
1,693,405	-		GFF1664	0.26	-0.3
1,693,405	-		GFF1664	0.26	-1.5
1,693,405	-		GFF1664	0.26	-1.1
1,693,405	-		GFF1664	0.26	-0.4
1,693,405	-		GFF1664	0.26	-0.7
1,693,405	-		GFF1664	0.26	-0.0
1,693,405	-		GFF1664	0.26	-1.0
1,693,405	-		GFF1664	0.26	+0.7
1,693,409	+		GFF1664	0.26	+0.1
1,693,409	-		GFF1664	0.26	-0.0
1,693,414	+		GFF1664	0.26	-0.4
1,693,433	+		GFF1664	0.28	-1.5
1,693,433	+		GFF1664	0.28	+0.9
1,693,433	+		GFF1664	0.28	-0.1
1,693,441	-		GFF1664	0.29	+0.1
1,693,442	+		GFF1664	0.29	+0.3
1,693,514	+		GFF1664	0.35	+0.6
1,693,522	+		GFF1664	0.36	-0.3
1,693,524	+		GFF1664	0.36	-2.4
1,693,532	-		GFF1664	0.37	-0.6
1,693,533	+		GFF1664	0.37	-0.4
1,693,538	+		GFF1664	0.37	-0.4
1,693,541	+		GFF1664	0.38	+0.3
1,693,541	-		GFF1664	0.38	-0.4
1,693,551	-		GFF1664	0.38	+0.8
1,693,566	+		GFF1664	0.40	+0.3
1,693,578	+		GFF1664	0.41	+0.3
1,693,583	+		GFF1664	0.41	+0.3
1,693,583	+		GFF1664	0.41	-0.4
1,693,586	-		GFF1664	0.42	-0.5
1,693,586	-		GFF1664	0.42	-1.4
1,693,586	-		GFF1664	0.42	+0.1
1,693,586	-		GFF1664	0.42	-0.1
1,693,596	-		GFF1664	0.42	+0.2
1,693,631	+		GFF1664	0.45	-0.0
1,693,669	+		GFF1664	0.49	-0.6
1,693,713	-		GFF1664	0.53	-2.1
1,693,744	+		GFF1664	0.55	-1.9
1,693,773	+		GFF1664	0.58	-0.8
1,693,776	-		GFF1664	0.58	-0.1
1,693,776	-		GFF1664	0.58	-0.2
1,693,776	-		GFF1664	0.58	-0.9
1,693,781	-		GFF1664	0.59	+0.5
1,693,792	+		GFF1664	0.60	-0.9
1,693,795	-		GFF1664	0.60	-0.4
1,693,797	+		GFF1664	0.60	-1.8
1,693,797	+		GFF1664	0.60	-1.0
1,693,797	+		GFF1664	0.60	-0.3
1,693,797	+		GFF1664	0.60	-0.2
1,693,797	+		GFF1664	0.60	-2.5
1,693,797	+		GFF1664	0.60	-2.5
1,693,797	+		GFF1664	0.60	+1.0
1,693,805	-		GFF1664	0.61	+0.3
1,693,805	-		GFF1664	0.61	-0.2
1,693,833	+		GFF1664	0.63	-0.5
1,693,836	-		GFF1664	0.64	-1.8
1,693,864	+		GFF1664	0.66	+0.0
1,693,866	+		GFF1664	0.66	+0.1
1,693,877	+		GFF1664	0.67	-0.9
1,693,877	+		GFF1664	0.67	+0.8
1,693,885	+		GFF1664	0.68	-1.0
1,693,893	-		GFF1664	0.69	-1.1
1,693,893	-		GFF1664	0.69	+1.4
1,693,893	-		GFF1664	0.69	-1.2
1,693,907	-		GFF1664	0.70	-0.1
1,693,931	+		GFF1664	0.72	+0.1
1,693,946	-		GFF1664	0.73	+0.1
1,693,952	+		GFF1664	0.74	-1.1
1,693,952	+		GFF1664	0.74	+0.5
1,693,952	+		GFF1664	0.74	+0.2
1,693,952	+		GFF1664	0.74	+0.4
1,693,952	+		GFF1664	0.74	-0.2
1,693,952	+		GFF1664	0.74	+0.8
1,693,952	+		GFF1664	0.74	+0.1
1,693,952	+		GFF1664	0.74	+0.0
1,693,952	+		GFF1664	0.74	-2.1
1,693,960	-		GFF1664	0.74	-0.0
1,693,960	-		GFF1664	0.74	+0.2
1,693,960	-		GFF1664	0.74	-1.3
1,693,960	-		GFF1664	0.74	+0.2
1,693,967	+		GFF1664	0.75	-1.2
1,693,967	+		GFF1664	0.75	-0.7
1,693,972	+		GFF1664	0.75	-0.9
1,693,977	+		GFF1664	0.76	-0.6
1,693,985	-		GFF1664	0.77	+1.0
1,693,985	-		GFF1664	0.77	-1.8
1,693,985	-		GFF1664	0.77	-2.6
1,693,986	-		GFF1664	0.77	+0.6
1,693,986	-		GFF1664	0.77	-0.2
1,693,990	-		GFF1664	0.77	-0.7
1,693,995	-		GFF1664	0.77	+0.5
1,693,995	-		GFF1664	0.77	-0.7
1,694,018	-		GFF1664	0.80	+0.2
1,694,030	-		GFF1664	0.81	+0.0
1,694,032	+		GFF1664	0.81	-1.4
1,694,052	-		GFF1664	0.82	+1.4
1,694,065	-		GFF1664	0.84	-1.2
1,694,093	+		GFF1664	0.86	+1.2
1,694,099	+		GFF1664	0.87	-0.1
1,694,101	+		GFF1664	0.87	-0.1
1,694,118	+		GFF1664	0.88	-1.8
1,694,122	+		GFF1664	0.89	-0.4
1,694,127	+		GFF1664	0.89	-1.7
1,694,135	-		GFF1664	0.90	+0.7
1,694,145	-				-2.4
1,694,145	-				-2.4
1,694,176	+				-1.4
1,694,176	+				-0.4
1,694,179	-				-0.6
1,694,184	-				-1.0
1,694,184	-				-0.2
1,694,184	-				+0.1
1,694,191	-				-2.2
1,694,205	-				-0.5
1,694,210	+				-1.2
1,694,210	+				-0.5
1,694,225	+				-0.2
1,694,225	+				-0.7
1,694,233	-				-2.4
1,694,243	-				-0.9
1,694,308	+				-0.5
1,694,320	-				-1.4
1,694,322	+				-0.5
1,694,340	+				-1.2
1,694,340	+				+0.7
1,694,341	+				+0.4
1,694,348	-				+0.6
1,694,366	+				+1.0
1,694,378	+				+0.9
1,694,378	+				-2.0
1,694,378	+				-0.8
1,694,383	+				+1.2
1,694,383	+				-1.1
1,694,386	-				+0.2
1,694,391	-				-0.2
1,694,415	+		GFF1665	0.11	+0.6
1,694,426	-		GFF1665	0.12	-0.6
1,694,431	-		GFF1665	0.13	-1.4
1,694,454	+		GFF1665	0.17	+0.1
1,694,476	+		GFF1665	0.20	-0.3
1,694,484	-		GFF1665	0.21	-0.8
1,694,495	+		GFF1665	0.23	-1.0
1,694,495	-		GFF1665	0.23	+0.5
1,694,510	-		GFF1665	0.25	+1.3
1,694,520	+		GFF1665	0.27	-1.0
1,694,533	-		GFF1665	0.29	-0.2
1,694,536	+		GFF1665	0.29	+0.7
1,694,541	+		GFF1665	0.30	-2.1
1,694,545	+		GFF1665	0.30	-0.4
1,694,549	-		GFF1665	0.31	+1.6
1,694,549	-		GFF1665	0.31	+0.9
1,694,564	-		GFF1665	0.33	+0.3
1,694,594	+		GFF1665	0.38	-1.6
1,694,616	+		GFF1665	0.41	+0.0
1,694,623	+		GFF1665	0.42	-1.8
1,694,629	+		GFF1665	0.43	-2.4
1,694,630	+		GFF1665	0.43	+0.4
1,694,630	+		GFF1665	0.43	-0.8
1,694,630	-		GFF1665	0.43	+1.2
1,694,635	+		GFF1665	0.44	-0.9
1,694,678	+		GFF1665	0.51	+0.4
1,694,678	+		GFF1665	0.51	-0.3
1,694,678	+		GFF1665	0.51	+0.2
1,694,683	+		GFF1665	0.51	-0.3
1,694,683	+		GFF1665	0.51	-1.3
1,694,683	+		GFF1665	0.51	-1.2
1,694,683	+		GFF1665	0.51	-0.3
1,694,686	-		GFF1665	0.52	+0.1
1,694,686	-		GFF1665	0.52	+0.6
1,694,686	-		GFF1665	0.52	+0.0
1,694,690	-		GFF1665	0.52	+1.2
1,694,691	-		GFF1665	0.53	-0.5
1,694,691	-		GFF1665	0.53	+0.8
1,694,691	-		GFF1665	0.53	-0.9
1,694,693	+		GFF1665	0.53	+0.2
1,694,696	-		GFF1665	0.53	+0.0
1,694,712	+		GFF1665	0.56	+1.3
1,694,712	+		GFF1665	0.56	-1.6
1,694,712	+		GFF1665	0.56	-1.3
1,694,712	+		GFF1665	0.56	+0.2
1,694,715	-		GFF1665	0.56	-0.6
1,694,720	-		GFF1665	0.57	-1.9
1,694,720	-		GFF1665	0.57	-1.5
1,694,720	-		GFF1665	0.57	+0.7
1,694,720	-		GFF1665	0.57	+1.1
1,694,721	+		GFF1665	0.57	-1.0
1,694,727	-		GFF1665	0.58	-0.9
1,694,736	+		GFF1665	0.59	+0.5
1,694,736	+		GFF1665	0.59	-1.6
1,694,736	+		GFF1665	0.59	-0.3
1,694,744	-		GFF1665	0.61	-0.6
1,694,744	-		GFF1665	0.61	-2.1
1,694,757	-		GFF1665	0.63	-1.5
1,694,791	+		GFF1665	0.68	-1.0
1,694,791	+		GFF1665	0.68	-1.3
1,694,791	+		GFF1665	0.68	-0.5
1,694,791	+		GFF1665	0.68	-1.1
1,694,791	+		GFF1665	0.68	-1.2
1,694,793	+		GFF1665	0.68	-2.1
1,694,799	-		GFF1665	0.69	-0.0
1,694,799	-		GFF1665	0.69	+0.3
1,694,799	-		GFF1665	0.69	-0.5
1,694,799	-		GFF1665	0.69	+0.7
1,694,799	-		GFF1665	0.69	+0.8
1,694,799	-		GFF1665	0.69	-1.7
1,694,801	+		GFF1665	0.69	-0.4
1,694,801	+		GFF1665	0.69	-0.7
1,694,801	+		GFF1665	0.69	-1.0
1,694,801	+		GFF1665	0.69	-0.0
1,694,809	-		GFF1665	0.70	-0.2
1,694,820	-		GFF1665	0.72	+0.0
1,694,823	-		GFF1665	0.73	-0.3
1,694,823	-		GFF1665	0.73	+0.3
1,694,860	+		GFF1665	0.78	-1.6
1,694,866	-		GFF1665	0.79	-1.9
1,694,868	-		GFF1665	0.79	-1.6
1,694,868	-		GFF1665	0.79	+0.5
1,694,875	+		GFF1665	0.80	-0.2
1,694,875	+		GFF1665	0.80	+0.2
1,694,878	-		GFF1665	0.81	+0.3
1,694,880	+		GFF1665	0.81	+0.9
1,694,883	-		GFF1665	0.82	+0.3
1,694,883	-		GFF1665	0.82	-0.6
1,694,904	+		GFF1665	0.85	-1.9
1,694,904	+		GFF1665	0.85	-1.3
1,694,912	-		GFF1665	0.86	-1.2
1,694,912	-		GFF1665	0.86	+0.1
1,694,912	-		GFF1665	0.86	-0.2
1,694,912	-		GFF1665	0.86	+0.9
1,694,918	+		GFF1665	0.87	-0.8
1,694,918	+		GFF1665	0.87	-1.8
1,694,918	+		GFF1665	0.87	+0.4
1,694,918	+		GFF1665	0.87	-1.8
1,694,927	+		GFF1665	0.88	+0.1
1,694,949	+				-1.5
1,694,949	+				+0.6
1,694,954	+				-0.4
1,694,972	-				-0.1
1,694,981	-				-1.2
1,695,032	+				-0.9
1,695,040	-				-0.2
1,695,040	-				-2.2
1,695,040	-				-0.7
1,695,058	+				+0.2
1,695,066	-				-0.2
1,695,066	-				-0.1
1,695,082	-				-0.2
1,695,093	+				-0.7
1,695,093	+				-1.2
1,695,093	+				-1.1
1,695,093	+				-1.0
1,695,093	+				-1.9
1,695,095	+				-2.1
1,695,095	+				+1.1
1,695,095	+				+0.2
1,695,095	+				-0.2
1,695,095	+				-2.3
1,695,095	+				-2.4
1,695,095	+				-0.2
1,695,095	+				+0.6
1,695,095	+				-1.4
1,695,095	+				-1.8
1,695,095	+				+0.4
1,695,095	+				-2.7
1,695,095	+				-1.9
1,695,095	+				-1.6
1,695,095	+				+0.5
1,695,095	+				-1.7
1,695,095	+				-1.1
1,695,095	+				-0.3
1,695,095	+				+0.1
1,695,095	+				-2.5
1,695,095	+				+0.1
1,695,095	+				-0.5
1,695,095	+				-0.2
1,695,101	-				-1.0
1,695,101	-				-0.3
1,695,101	-				+0.6
1,695,101	-				+1.1
1,695,101	-				-0.2
1,695,101	-				-0.2
1,695,101	-				-0.1
1,695,102	-				-1.5
1,695,103	-				+0.7
1,695,103	-				-0.9
1,695,103	-				-2.1
1,695,103	-				-1.4
1,695,103	-				+0.7
1,695,103	-				-0.8
1,695,103	-				-1.6
1,695,103	-				-0.3
1,695,103	-				+1.0
1,695,103	-				-2.5
1,695,103	-				-0.5
1,695,103	-				+0.4
1,695,103	-				+0.9
1,695,103	-				-1.1
1,695,103	-				+0.3
1,695,103	-				-1.1
1,695,103	-				-0.8
1,695,103	-				-0.2
1,695,103	-				-1.4
1,695,103	-				-1.2
1,695,103	-				-0.2
1,695,103	-				+0.3
1,695,103	-				+0.2
1,695,103	-				+0.4
1,695,103	-				-0.3
1,695,103	-				+0.5
1,695,103	-				-1.7
1,695,103	-				+0.4
1,695,103	-				-1.2
1,695,103	-				-0.0
1,695,103	-				-0.6
1,695,103	-				+1.6
1,695,103	-				+0.6
1,695,110	+				-2.5
1,695,115	+				+1.6
1,695,118	-				-0.4
1,695,118	-				-2.2
1,695,119	+				-3.0
1,695,123	-				-1.0
1,695,150	-				+0.6
1,695,160	-				-0.1
1,695,174	-				+0.8
1,695,184	+				-0.6
1,695,192	-				-0.2
1,695,207	+		GFF1666	0.10	-0.1
1,695,216	-		GFF1666	0.11	+0.6
1,695,246	+		GFF1666	0.13	+0.6
1,695,265	-		GFF1666	0.14	-0.5
1,695,312	+		GFF1666	0.18	+0.9
1,695,312	+		GFF1666	0.18	+0.1
1,695,312	+		GFF1666	0.18	-0.9
1,695,312	+		GFF1666	0.18	+0.4
1,695,312	+		GFF1666	0.18	-0.5
1,695,318	+		GFF1666	0.19	-1.5
1,695,318	+		GFF1666	0.19	-1.0
1,695,318	+		GFF1666	0.19	+0.3
1,695,318	+		GFF1666	0.19	-0.9
1,695,318	+		GFF1666	0.19	+0.5
1,695,318	+		GFF1666	0.19	+1.8
1,695,320	-		GFF1666	0.19	+0.0
1,695,320	-		GFF1666	0.19	-1.1
1,695,320	-		GFF1666	0.19	+0.1
1,695,320	-		GFF1666	0.19	+0.5
1,695,320	-		GFF1666	0.19	+0.6
1,695,326	-		GFF1666	0.19	+0.4
1,695,326	-		GFF1666	0.19	-0.4
1,695,333	+		GFF1666	0.20	+1.3
1,695,333	+		GFF1666	0.20	-0.1
1,695,341	+		GFF1666	0.20	-0.0
1,695,349	-		GFF1666	0.21	-1.3
1,695,382	+		GFF1666	0.23	-0.4
1,695,382	+		GFF1666	0.23	-1.5
1,695,382	+		GFF1666	0.23	-0.2
1,695,385	-		GFF1666	0.24	-0.6
1,695,396	-		GFF1666	0.25	-0.8
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