Strain Fitness in Sphingobium sp. HT1-2 around GFF1625

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,652,798	+				-0.5
1,652,806	-				-0.9
1,652,806	-				-1.4
1,652,844	-				-1.3
1,652,875	+				-1.1
1,652,878	+				-0.0
1,652,890	+				-0.6
1,652,890	+				-3.2
1,652,893	-				+0.2
1,652,898	-				+1.4
1,652,900	+				+1.9
1,652,900	+				-0.6
1,652,900	+				-1.1
1,652,900	+				-1.4
1,652,908	-				+0.0
1,652,908	-				-1.6
1,652,908	-				-1.1
1,652,908	-				-1.5
1,652,917	+				+0.4
1,652,934	+				-0.6
1,652,942	-				-1.4
1,652,950	+				-0.7
1,653,043	+		GFF1624	0.17	-0.4
1,653,046	-		GFF1624	0.18	+0.9
1,653,046	-		GFF1624	0.18	-1.4
1,653,070	+		GFF1624	0.21	-2.4
1,653,075	+		GFF1624	0.21	-1.8
1,653,099	-		GFF1624	0.24	+1.4
1,653,113	+		GFF1624	0.26	-1.2
1,653,113	+		GFF1624	0.26	-0.5
1,653,122	+		GFF1624	0.27	-0.1
1,653,140	+		GFF1624	0.29	-2.3
1,653,148	-		GFF1624	0.30	-1.1
1,653,148	-		GFF1624	0.30	-0.0
1,653,170	+		GFF1624	0.32	-2.2
1,653,189	+		GFF1624	0.35	+1.1
1,653,189	+		GFF1624	0.35	-1.3
1,653,189	+		GFF1624	0.35	+0.6
1,653,197	-		GFF1624	0.35	+0.3
1,653,197	-		GFF1624	0.35	-1.6
1,653,197	-		GFF1624	0.35	+1.5
1,653,199	+		GFF1624	0.36	+0.4
1,653,199	+		GFF1624	0.36	-0.4
1,653,199	+		GFF1624	0.36	-1.5
1,653,199	+		GFF1624	0.36	-0.4
1,653,199	+		GFF1624	0.36	-0.5
1,653,199	+		GFF1624	0.36	-1.1
1,653,199	+		GFF1624	0.36	-1.1
1,653,199	+		GFF1624	0.36	+1.2
1,653,202	-		GFF1624	0.36	-1.6
1,653,204	+		GFF1624	0.36	+1.0
1,653,207	-		GFF1624	0.37	-1.9
1,653,207	-		GFF1624	0.37	-0.3
1,653,207	-		GFF1624	0.37	-1.2
1,653,207	-		GFF1624	0.37	+0.5
1,653,207	-		GFF1624	0.37	+0.0
1,653,207	-		GFF1624	0.37	-0.0
1,653,207	-		GFF1624	0.37	-1.1
1,653,246	-		GFF1624	0.41	-1.4
1,653,248	+		GFF1624	0.41	-1.2
1,653,268	-		GFF1624	0.44	-0.4
1,653,288	-		GFF1624	0.46	-0.4
1,653,288	-		GFF1624	0.46	+0.7
1,653,330	+		GFF1624	0.51	+0.6
1,653,332	+		GFF1624	0.51	+0.0
1,653,332	+		GFF1624	0.51	-1.2
1,653,332	+		GFF1624	0.51	+0.7
1,653,332	+		GFF1624	0.51	-2.1
1,653,332	+		GFF1624	0.51	+1.2
1,653,332	+		GFF1624	0.51	-1.6
1,653,332	+		GFF1624	0.51	+0.0
1,653,340	-		GFF1624	0.52	+0.3
1,653,340	-		GFF1624	0.52	+1.7
1,653,340	-		GFF1624	0.52	-2.6
1,653,340	-		GFF1624	0.52	-0.0
1,653,340	-		GFF1624	0.52	-1.1
1,653,340	-		GFF1624	0.52	-0.3
1,653,340	-		GFF1624	0.52	-1.3
1,653,340	-		GFF1624	0.52	+0.4
1,653,363	-		GFF1624	0.55	+0.3
1,653,406	-		GFF1624	0.60	-1.9
1,653,420	+		GFF1624	0.62	-1.0
1,653,420	+		GFF1624	0.62	-0.1
1,653,427	-		GFF1624	0.62	-1.7
1,653,428	-		GFF1624	0.63	-1.2
1,653,433	+		GFF1624	0.63	-0.4
1,653,433	+		GFF1624	0.63	-0.5
1,653,433	+		GFF1624	0.63	-1.1
1,653,439	-		GFF1624	0.64	-2.1
1,653,441	-		GFF1624	0.64	-1.5
1,653,441	-		GFF1624	0.64	-0.6
1,653,467	+		GFF1624	0.67	-1.2
1,653,480	+		GFF1624	0.69	-1.8
1,653,481	-		GFF1624	0.69	+0.2
1,653,495	+		GFF1624	0.70	+0.3
1,653,503	-		GFF1624	0.71	+0.9
1,653,527	+		GFF1624	0.74	+0.1
1,653,530	-		GFF1624	0.75	-0.2
1,653,530	-		GFF1624	0.75	-1.5
1,653,536	-		GFF1624	0.75	-0.4
1,653,554	+		GFF1624	0.77	-0.2
1,653,565	+		GFF1624	0.79	-1.1
1,653,602	+		GFF1624	0.83	-1.2
1,653,602	+		GFF1624	0.83	+0.4
1,653,607	+		GFF1624	0.84	-1.3
1,653,607	+		GFF1624	0.84	+0.6
1,653,615	-		GFF1624	0.85	-0.6
1,653,615	-		GFF1624	0.85	-0.8
1,653,626	-		GFF1624	0.86	-0.2
1,653,665	-				+0.7
1,653,675	+				+0.3
1,653,676	-				+0.8
1,653,683	-				+0.3
1,653,683	-				-0.2
1,653,688	-				-1.2
1,653,688	-				+0.4
1,653,688	-				-1.1
1,653,693	-				-1.1
1,653,693	-				+0.4
1,653,702	-				-1.4
1,653,706	+				-0.5
1,653,706	+				-0.1
1,653,711	+				-1.2
1,653,719	-				+0.4
1,653,721	+				-0.8
1,653,721	+				-0.4
1,653,721	+				+1.0
1,653,721	+				-1.6
1,653,721	+				+0.3
1,653,721	+				+1.3
1,653,721	+				-2.0
1,653,721	+				+0.7
1,653,721	+				+1.0
1,653,721	+				-0.3
1,653,729	-				+0.6
1,653,729	-				-0.3
1,653,729	-				+0.5
1,653,729	-				+0.8
1,653,729	-				+0.4
1,653,729	-				-2.0
1,653,729	-				-1.7
1,653,729	-				+0.0
1,653,729	-				+0.9
1,653,731	+				-1.0
1,653,731	+				+0.0
1,653,731	+				-1.6
1,653,731	+				-1.1
1,653,731	+				-0.0
1,653,731	+				-0.8
1,653,734	-				+0.0
1,653,734	-				-0.8
1,653,739	-				+0.6
1,653,739	-				-1.2
1,653,739	-				-1.8
1,653,741	+				-1.1
1,653,741	+				+0.4
1,653,741	+				-0.2
1,653,741	+				-0.4
1,653,749	-				-0.2
1,653,749	-				-0.2
1,653,749	-				-1.3
1,653,769	+				-2.3
1,653,769	+				+0.2
1,653,769	+				+0.3
1,653,769	+				-1.0
1,653,769	+				-0.7
1,653,777	-				+1.4
1,653,777	-				+0.5
1,653,777	-				-0.9
1,653,777	-				-0.4
1,653,779	-				-2.1
1,653,800	+				-0.8
1,653,805	+				-1.9
1,653,817	+				-1.3
1,653,825	-				-1.7
1,653,845	-				-2.7
1,653,845	-				-1.2
1,653,850	+		GFF1625	0.10	-2.7
1,653,878	-		GFF1625	0.14	-1.7
1,653,898	-		GFF1625	0.18	-1.7
1,653,906	+		GFF1625	0.19	-1.8
1,653,906	+		GFF1625	0.19	-2.2
1,653,936	-		GFF1625	0.23	-3.9
1,653,938	+		GFF1625	0.24	-2.5
1,653,946	-		GFF1625	0.25	-2.2
1,653,946	-		GFF1625	0.25	-2.3
1,653,946	-		GFF1625	0.25	-1.6
1,653,981	+		GFF1625	0.30	-2.3
1,653,998	+		GFF1625	0.33	-3.0
1,654,003	+		GFF1625	0.34	-1.2
1,654,008	+		GFF1625	0.35	-1.2
1,654,028	+		GFF1625	0.38	-1.8
1,654,034	-		GFF1625	0.39	-2.5
1,654,050	+		GFF1625	0.41	-2.0
1,654,101	+		GFF1625	0.49	-2.8
1,654,110	-		GFF1625	0.50	-1.4
1,654,112	+		GFF1625	0.51	-2.3
1,654,112	+		GFF1625	0.51	-2.6
1,654,112	+		GFF1625	0.51	-3.5
1,654,120	-		GFF1625	0.52	-2.5
1,654,120	-		GFF1625	0.52	-2.3
1,654,139	+		GFF1625	0.55	-3.3
1,654,139	+		GFF1625	0.55	-2.3
1,654,139	+		GFF1625	0.55	-2.3
1,654,139	+		GFF1625	0.55	-1.4
1,654,139	+		GFF1625	0.55	-1.2
1,654,139	+		GFF1625	0.55	-3.2
1,654,139	+		GFF1625	0.55	-1.6
1,654,139	+		GFF1625	0.55	-1.9
1,654,139	+		GFF1625	0.55	-2.0
1,654,139	+		GFF1625	0.55	-1.6
1,654,139	+		GFF1625	0.55	-3.3
1,654,139	+		GFF1625	0.55	+0.4
1,654,139	+		GFF1625	0.55	-2.0
1,654,139	+		GFF1625	0.55	-1.1
1,654,139	+		GFF1625	0.55	-1.7
1,654,139	+		GFF1625	0.55	-1.4
1,654,139	+		GFF1625	0.55	-3.7
1,654,139	+		GFF1625	0.55	-3.2
1,654,139	+		GFF1625	0.55	-2.4
1,654,139	+		GFF1625	0.55	-2.8
1,654,139	+		GFF1625	0.55	-1.4
1,654,139	+		GFF1625	0.55	-2.2
1,654,139	+		GFF1625	0.55	-2.0
1,654,139	+		GFF1625	0.55	-2.1
1,654,139	+		GFF1625	0.55	-1.3
1,654,139	+		GFF1625	0.55	-2.3
1,654,139	+		GFF1625	0.55	-2.0
1,654,139	+		GFF1625	0.55	-2.1
1,654,144	+		GFF1625	0.56	-1.8
1,654,144	+		GFF1625	0.56	-2.2
1,654,147	-		GFF1625	0.56	-1.8
1,654,147	-		GFF1625	0.56	-2.2
1,654,147	-		GFF1625	0.56	-2.3
1,654,147	-		GFF1625	0.56	-1.3
1,654,147	-		GFF1625	0.56	-1.6
1,654,147	-		GFF1625	0.56	-3.0
1,654,147	-		GFF1625	0.56	-2.3
1,654,147	-		GFF1625	0.56	-2.2
1,654,147	-		GFF1625	0.56	-3.3
1,654,147	-		GFF1625	0.56	-2.9
1,654,147	-		GFF1625	0.56	-2.2
1,654,147	-		GFF1625	0.56	-1.6
1,654,147	-		GFF1625	0.56	-3.4
1,654,147	-		GFF1625	0.56	-2.6
1,654,147	-		GFF1625	0.56	-2.7
1,654,147	-		GFF1625	0.56	-2.8
1,654,147	-		GFF1625	0.56	-2.0
1,654,147	-		GFF1625	0.56	-1.3
1,654,147	-		GFF1625	0.56	-2.0
1,654,147	-		GFF1625	0.56	-3.3
1,654,147	-		GFF1625	0.56	-3.2
1,654,147	-		GFF1625	0.56	-1.7
1,654,147	-		GFF1625	0.56	-2.0
1,654,147	-		GFF1625	0.56	-1.7
1,654,147	-		GFF1625	0.56	-3.4
1,654,147	-		GFF1625	0.56	-2.0
1,654,147	-		GFF1625	0.56	-2.8
1,654,147	-		GFF1625	0.56	-2.2
1,654,147	-		GFF1625	0.56	-1.3
1,654,147	-		GFF1625	0.56	-2.1
1,654,147	-		GFF1625	0.56	-2.0
1,654,147	-		GFF1625	0.56	-1.7
1,654,147	-		GFF1625	0.56	-3.0
1,654,147	-		GFF1625	0.56	-1.4
1,654,147	-		GFF1625	0.56	-3.3
1,654,147	-		GFF1625	0.56	-2.8
1,654,147	-		GFF1625	0.56	-1.7
1,654,152	-		GFF1625	0.57	-1.6
1,654,152	-		GFF1625	0.57	-2.0
1,654,152	-		GFF1625	0.57	-2.7
1,654,174	+		GFF1625	0.60	-2.3
1,654,192	+		GFF1625	0.63	-1.4
1,654,202	+		GFF1625	0.65	-1.9
1,654,205	-		GFF1625	0.65	-2.2
1,654,210	-		GFF1625	0.66	-2.9
1,654,220	+		GFF1625	0.67	-1.5
1,654,220	+		GFF1625	0.67	-2.2
1,654,223	-		GFF1625	0.68	-3.5
1,654,223	-		GFF1625	0.68	-2.2
1,654,228	-		GFF1625	0.69	-2.5
1,654,228	-		GFF1625	0.69	-2.9
1,654,228	-		GFF1625	0.69	-2.3
1,654,236	+		GFF1625	0.70	-2.3
1,654,239	-		GFF1625	0.70	-2.2
1,654,259	-		GFF1625	0.73	-2.2
1,654,259	-		GFF1625	0.73	-2.4
1,654,269	+		GFF1625	0.75	-1.6
1,654,274	+		GFF1625	0.76	-1.0
1,654,282	-		GFF1625	0.77	-1.4
1,654,300	-		GFF1625	0.80	-3.4
1,654,362	+		GFF1625	0.89	-1.2
1,654,362	+		GFF1625	0.89	-1.3
1,654,363	-		GFF1625	0.90	-2.6
1,654,363	-		GFF1625	0.90	-4.3
1,654,367	+				-2.1
1,654,373	+				-2.1
1,654,373	+				-1.1
1,654,381	-				-2.2
1,654,381	-				-2.3
1,654,383	-				-2.5
1,654,383	-				-2.7
1,654,383	-				-1.7
1,654,383	-				+0.2
1,654,391	-				-1.7
1,654,391	-				-2.6
1,654,393	+				+0.8
1,654,393	+				+0.8
1,654,393	+				+0.1
1,654,393	+				+0.1
1,654,401	-				-1.5
1,654,401	-				+0.3
1,654,402	+				+1.4
1,654,417	+				+0.5
1,654,432	-				+0.2
1,654,439	+				-1.4
1,654,439	+				+0.9
1,654,439	+				-1.0
1,654,444	+				+1.1
1,654,445	-				-0.0
1,654,447	-				-0.6
1,654,447	-				-1.4
1,654,530	-				+0.3
1,654,534	+				-3.1
1,654,536	+				-1.3
1,654,541	+				-1.8
1,654,934	+		GFF1626	0.33	-1.7
1,654,972	+		GFF1626	0.36	-1.3
1,655,119	+		GFF1626	0.47	+0.1
1,655,124	+		GFF1626	0.48	-1.3
1,655,227	+		GFF1626	0.56	-1.5
1,655,317	+		GFF1626	0.63	-2.4
1,655,317	+		GFF1626	0.63	-1.1