Strain Fitness in Sphingobium sp. HT1-2 around GFF1578

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,605,954	+		GFF1577	0.43	+0.7
1,605,962	-		GFF1577	0.44	+0.5
1,605,977	-		GFF1577	0.44	+0.8
1,606,005	+		GFF1577	0.46	+0.8
1,606,008	-		GFF1577	0.46	-0.3
1,606,013	-		GFF1577	0.47	+0.6
1,606,013	-		GFF1577	0.47	-0.1
1,606,020	+		GFF1577	0.47	-0.5
1,606,031	+		GFF1577	0.48	-0.3
1,606,031	+		GFF1577	0.48	-2.5
1,606,067	+		GFF1577	0.50	-1.2
1,606,075	-		GFF1577	0.50	+0.7
1,606,097	+		GFF1577	0.52	-0.4
1,606,102	+		GFF1577	0.52	+0.6
1,606,107	+		GFF1577	0.52	+0.5
1,606,107	+		GFF1577	0.52	-0.6
1,606,107	+		GFF1577	0.52	+0.3
1,606,114	+		GFF1577	0.53	-1.1
1,606,115	-		GFF1577	0.53	+0.5
1,606,115	-		GFF1577	0.53	-1.3
1,606,115	-		GFF1577	0.53	+0.5
1,606,129	+		GFF1577	0.54	-1.0
1,606,129	+		GFF1577	0.54	-1.0
1,606,129	+		GFF1577	0.54	-0.5
1,606,137	-		GFF1577	0.54	-0.1
1,606,137	-		GFF1577	0.54	-0.8
1,606,137	-		GFF1577	0.54	+0.2
1,606,137	-		GFF1577	0.54	-1.1
1,606,137	-		GFF1577	0.54	-0.9
1,606,137	-		GFF1577	0.54	+0.7
1,606,137	-		GFF1577	0.54	+0.2
1,606,154	-		GFF1577	0.55	-0.4
1,606,208	+		GFF1577	0.58	-0.4
1,606,212	-		GFF1577	0.58	-1.5
1,606,216	-		GFF1577	0.59	+0.8
1,606,231	+		GFF1577	0.60	-2.5
1,606,239	-		GFF1577	0.60	-0.7
1,606,239	-		GFF1577	0.60	-1.3
1,606,251	-		GFF1577	0.61	-0.5
1,606,251	-		GFF1577	0.61	+0.1
1,606,261	-		GFF1577	0.61	-0.2
1,606,273	-		GFF1577	0.62	-0.2
1,606,288	-		GFF1577	0.63	-2.0
1,606,325	+		GFF1577	0.65	-0.2
1,606,326	-		GFF1577	0.65	-1.9
1,606,333	-		GFF1577	0.66	-0.8
1,606,335	+		GFF1577	0.66	-0.2
1,606,335	+		GFF1577	0.66	+0.6
1,606,343	-		GFF1577	0.66	+0.6
1,606,343	-		GFF1577	0.66	+1.3
1,606,346	-		GFF1577	0.66	+0.7
1,606,348	-		GFF1577	0.67	-0.9
1,606,391	-		GFF1577	0.69	+0.1
1,606,402	+		GFF1577	0.70	-2.3
1,606,402	+		GFF1577	0.70	-1.1
1,606,402	+		GFF1577	0.70	-1.9
1,606,407	+		GFF1577	0.70	-1.0
1,606,410	-		GFF1577	0.70	+0.4
1,606,410	-		GFF1577	0.70	-0.4
1,606,410	-		GFF1577	0.70	-0.6
1,606,413	+		GFF1577	0.70	-0.6
1,606,413	+		GFF1577	0.70	-0.5
1,606,415	-		GFF1577	0.71	-1.5
1,606,415	-		GFF1577	0.71	-2.0
1,606,421	-		GFF1577	0.71	+1.4
1,606,421	-		GFF1577	0.71	-0.7
1,606,431	+		GFF1577	0.72	+0.5
1,606,439	-		GFF1577	0.72	-0.2
1,606,445	-		GFF1577	0.72	-0.4
1,606,450	-		GFF1577	0.73	+0.4
1,606,455	-		GFF1577	0.73	-2.0
1,606,455	-		GFF1577	0.73	-0.0
1,606,460	+		GFF1577	0.73	-1.5
1,606,460	+		GFF1577	0.73	-1.6
1,606,460	+		GFF1577	0.73	+0.2
1,606,465	+		GFF1577	0.74	-0.5
1,606,465	+		GFF1577	0.74	-0.4
1,606,465	+		GFF1577	0.74	-0.2
1,606,465	+		GFF1577	0.74	-0.7
1,606,473	-		GFF1577	0.74	-1.1
1,606,473	-		GFF1577	0.74	+0.1
1,606,473	-		GFF1577	0.74	-1.4
1,606,477	+		GFF1577	0.74	-0.1
1,606,477	+		GFF1577	0.74	-0.0
1,606,477	+		GFF1577	0.74	-1.5
1,606,477	+		GFF1577	0.74	-0.0
1,606,477	+		GFF1577	0.74	-2.7
1,606,482	+		GFF1577	0.75	-2.1
1,606,485	-		GFF1577	0.75	-2.5
1,606,493	-		GFF1577	0.75	-1.3
1,606,508	-		GFF1577	0.76	+0.9
1,606,512	-		GFF1577	0.76	+1.0
1,606,513	-		GFF1577	0.76	+0.9
1,606,519	+		GFF1577	0.77	-0.2
1,606,527	-		GFF1577	0.77	+0.8
1,606,539	-		GFF1577	0.78	+0.9
1,606,551	-		GFF1577	0.79	+0.7
1,606,553	-		GFF1577	0.79	-0.4
1,606,555	+		GFF1577	0.79	-0.9
1,606,555	+		GFF1577	0.79	-0.1
1,606,555	+		GFF1577	0.79	-1.3
1,606,555	+		GFF1577	0.79	-1.2
1,606,556	-		GFF1577	0.79	+0.7
1,606,556	-		GFF1577	0.79	-1.1
1,606,558	-		GFF1577	0.79	-1.5
1,606,558	-		GFF1577	0.79	-1.5
1,606,563	+		GFF1577	0.79	-1.3
1,606,563	-		GFF1577	0.79	-0.0
1,606,563	-		GFF1577	0.79	-0.6
1,606,563	-		GFF1577	0.79	-1.0
1,606,563	-		GFF1577	0.79	-0.8
1,606,572	-		GFF1577	0.80	-1.2
1,606,581	+		GFF1577	0.81	+0.2
1,606,581	+		GFF1577	0.81	-1.3
1,606,597	-		GFF1577	0.82	-1.2
1,606,599	+		GFF1577	0.82	+1.2
1,606,599	+		GFF1577	0.82	+0.7
1,606,599	+		GFF1577	0.82	-1.9
1,606,602	-		GFF1577	0.82	-1.0
1,606,607	-		GFF1577	0.82	-0.6
1,606,607	-		GFF1577	0.82	-0.9
1,606,607	-		GFF1577	0.82	-2.1
1,606,607	-		GFF1577	0.82	+0.1
1,606,607	-		GFF1577	0.82	-1.4
1,606,607	-		GFF1577	0.82	+0.8
1,606,607	-		GFF1577	0.82	+0.7
1,606,607	-		GFF1577	0.82	+1.1
1,606,610	+		GFF1577	0.82	-0.7
1,606,613	-		GFF1577	0.82	+0.7
1,606,618	-		GFF1577	0.83	+0.2
1,606,618	-		GFF1577	0.83	+0.6
1,606,649	+		GFF1577	0.85	-1.6
1,606,649	+		GFF1577	0.85	+0.2
1,606,652	-		GFF1577	0.85	+0.8
1,606,659	+		GFF1577	0.85	-0.2
1,606,691	+		GFF1577	0.87	-0.0
1,606,716	-		GFF1577	0.89	+0.3
1,606,790	+				-1.0
1,606,798	-				+0.1
1,606,802	-				-0.4
1,606,837	-				-1.3
1,606,861	+				-2.3
1,606,861	+				-1.1
1,606,861	+				-0.6
1,606,863	-				-0.4
1,606,865	+				-1.7
1,606,871	+				-1.4
1,606,871	+				-2.1
1,606,871	+				+0.1
1,606,871	+				-0.8
1,606,879	-				-1.1
1,606,879	-				-0.4
1,606,926	+				+0.1
1,606,959	-				+0.4
1,606,959	-				+0.2
1,606,964	-				-1.1
1,606,974	-				-0.5
1,606,976	+				-0.8
1,606,984	-				+0.6
1,607,001	+				-0.4
1,607,008	+				+0.2
1,607,009	-				-0.3
1,607,064	+		GFF1578	0.15	+0.2
1,607,072	-		GFF1578	0.16	-2.4
1,607,077	+		GFF1578	0.17	+0.8
1,607,085	-		GFF1578	0.18	-0.2
1,607,087	+		GFF1578	0.18	-0.2
1,607,087	+		GFF1578	0.18	-0.1
1,607,087	+		GFF1578	0.18	-1.9
1,607,087	+		GFF1578	0.18	+1.1
1,607,087	+		GFF1578	0.18	+0.1
1,607,087	+		GFF1578	0.18	+0.5
1,607,087	+		GFF1578	0.18	-1.9
1,607,095	-		GFF1578	0.19	-0.8
1,607,095	-		GFF1578	0.19	-0.7
1,607,095	-		GFF1578	0.19	-0.3
1,607,095	-		GFF1578	0.19	+0.3
1,607,095	-		GFF1578	0.19	-1.3
1,607,095	-		GFF1578	0.19	+0.9
1,607,095	-		GFF1578	0.19	+0.7
1,607,095	-		GFF1578	0.19	+0.1
1,607,095	-		GFF1578	0.19	+0.3
1,607,095	-		GFF1578	0.19	-0.8
1,607,097	+		GFF1578	0.20	+0.2
1,607,105	-		GFF1578	0.21	-0.6
1,607,112	+		GFF1578	0.22	-0.3
1,607,120	-		GFF1578	0.23	-1.9
1,607,123	-		GFF1578	0.23	-1.7
1,607,128	+		GFF1578	0.24	-1.2
1,607,133	+		GFF1578	0.24	-0.5
1,607,133	+		GFF1578	0.24	-0.5
1,607,159	+		GFF1578	0.28	+1.8
1,607,159	+		GFF1578	0.28	-0.2
1,607,169	+		GFF1578	0.29	-1.4
1,607,177	-		GFF1578	0.30	-0.9
1,607,216	+		GFF1578	0.36	+0.2
1,607,216	+		GFF1578	0.36	-0.3
1,607,216	+		GFF1578	0.36	-1.1
1,607,222	+		GFF1578	0.37	-0.3
1,607,222	+		GFF1578	0.37	-0.8
1,607,224	-		GFF1578	0.37	-0.4
1,607,227	-		GFF1578	0.37	-3.0
1,607,230	-		GFF1578	0.38	-1.1
1,607,237	+		GFF1578	0.39	+0.8
1,607,238	+		GFF1578	0.39	+1.2
1,607,244	-		GFF1578	0.40	-0.1
1,607,244	-		GFF1578	0.40	+0.2
1,607,246	-		GFF1578	0.40	-1.1
1,607,257	+		GFF1578	0.41	+0.8
1,607,257	+		GFF1578	0.41	-1.1
1,607,257	+		GFF1578	0.41	+0.4
1,607,259	-		GFF1578	0.42	-2.6
1,607,265	-		GFF1578	0.42	-0.3
1,607,282	+		GFF1578	0.45	-0.6
1,607,285	+		GFF1578	0.45	+0.6
1,607,295	+		GFF1578	0.47	+0.4
1,607,295	+		GFF1578	0.47	+0.6
1,607,295	+		GFF1578	0.47	-1.4
1,607,295	+		GFF1578	0.47	+0.3
1,607,343	+		GFF1578	0.53	-1.2
1,607,352	+		GFF1578	0.54	-0.1
1,607,360	-		GFF1578	0.55	-1.0
1,607,435	+		GFF1578	0.66	+1.1
1,607,443	-		GFF1578	0.67	-1.6
1,607,443	-		GFF1578	0.67	+0.1
1,607,467	-		GFF1578	0.70	-0.1
1,607,500	+		GFF1578	0.74	-1.0
1,607,506	-		GFF1578	0.75	+1.0
1,607,523	+		GFF1578	0.78	-0.3
1,607,523	+		GFF1578	0.78	-0.8
1,607,531	-		GFF1578	0.79	-0.8
1,607,531	-		GFF1578	0.79	+1.0
1,607,531	-		GFF1578	0.79	+0.7
1,607,552	+		GFF1578	0.81	-0.2
1,607,552	+		GFF1578	0.81	+1.5
1,607,565	-		GFF1578	0.83	+0.6
1,607,570	-		GFF1578	0.84	-0.1
1,607,576	+		GFF1578	0.85	+0.4
1,607,600	+		GFF1578	0.88	-0.7
1,607,600	+		GFF1578	0.88	+0.5
1,607,608	-		GFF1578	0.89	-0.7
1,607,608	-		GFF1578	0.89	+0.5
1,607,608	-		GFF1578	0.89	-0.4
1,607,608	-		GFF1578	0.89	-0.5
1,607,630	+				-0.6
1,607,633	-				+0.3
1,607,633	-				-2.0
1,607,635	+				-0.0
1,607,645	+				-1.3
1,607,688	-				+0.2
1,607,688	-				+1.0
1,607,714	+				-1.8
1,607,714	+				-1.1
1,607,714	+				+0.8
1,607,719	+				-0.5
1,607,719	+				-1.3
1,607,719	+				-1.7
1,607,722	-				-1.1
1,607,722	-				+0.4
1,607,722	-				-1.3
1,607,724	+				-0.1
1,607,727	-				+0.2
1,607,727	-				-0.5
1,607,727	-				+0.3
1,607,730	+				-1.9
1,607,730	+				+1.1
1,607,732	-				-0.7
1,607,742	+				-0.5
1,607,748	+				-0.1
1,607,814	+				+0.6
1,607,816	+				-1.1
1,607,819	-				+0.5
1,607,824	-				-0.4
1,607,874	+				-1.0
1,607,874	-				-0.3
1,607,901	-				+0.1
1,607,901	-				-0.1
1,607,904	+				-0.5
1,607,904	+				+0.2
1,607,904	+				+1.6
1,607,912	-				-1.7
1,607,912	-				-0.7
1,607,912	-				-0.0
1,607,936	+				-1.2
1,607,936	+				-1.7
1,607,938	-				+0.9
1,607,939	-				+0.1
1,607,940	+				+0.3
1,607,946	+				-0.6
1,607,953	+				-0.1
1,607,978	+				+0.2
1,607,978	+				-1.0
1,607,978	+				+0.4
1,607,978	+				-0.1
1,607,979	-				+0.2
1,607,986	-		GFF1579	0.10	+0.5
1,607,986	-		GFF1579	0.10	+0.1
1,607,986	-		GFF1579	0.10	-1.0
1,607,986	-		GFF1579	0.10	+2.8
1,607,986	-		GFF1579	0.10	-1.2
1,607,986	-		GFF1579	0.10	+0.5
1,607,986	-		GFF1579	0.10	-0.4
1,607,986	-		GFF1579	0.10	-0.4
1,607,988	+		GFF1579	0.11	-0.3
1,607,996	-		GFF1579	0.11	-0.3
1,607,996	-		GFF1579	0.11	+0.2
1,607,996	-		GFF1579	0.11	-0.2
1,607,996	-		GFF1579	0.11	-1.1
1,607,996	-		GFF1579	0.11	-0.7
1,607,996	-		GFF1579	0.11	-0.0
1,607,998	+		GFF1579	0.11	-1.3
1,607,998	+		GFF1579	0.11	-0.7
1,608,006	-		GFF1579	0.12	-0.2
1,608,011	+		GFF1579	0.12	+1.0
1,608,016	+		GFF1579	0.13	-0.4
1,608,016	+		GFF1579	0.13	+0.0
1,608,016	+		GFF1579	0.13	+0.0
1,608,016	+		GFF1579	0.13	-0.9
1,608,016	+		GFF1579	0.13	-0.3
1,608,016	+		GFF1579	0.13	-1.1
1,608,016	+		GFF1579	0.13	+1.0
1,608,019	-		GFF1579	0.13	+0.4
1,608,024	-		GFF1579	0.14	-0.1
1,608,024	-		GFF1579	0.14	-0.4
1,608,024	-		GFF1579	0.14	-0.3
1,608,027	+		GFF1579	0.14	-1.1
1,608,035	-		GFF1579	0.14	-0.1
1,608,035	-		GFF1579	0.14	+1.4
1,608,040	+		GFF1579	0.15	-1.2
1,608,048	-		GFF1579	0.16	-0.4
1,608,048	-		GFF1579	0.16	-2.3
1,608,048	-		GFF1579	0.16	+1.1
1,608,070	+		GFF1579	0.17	-0.3
1,608,075	+		GFF1579	0.18	+1.3
1,608,078	-		GFF1579	0.18	+0.9
1,608,083	-		GFF1579	0.18	-0.6
1,608,083	-		GFF1579	0.18	-0.6
1,608,083	-		GFF1579	0.18	-0.7
1,608,086	+		GFF1579	0.19	-0.6
1,608,091	+		GFF1579	0.19	-0.3
1,608,091	+		GFF1579	0.19	+0.8
1,608,099	-		GFF1579	0.20	+0.2
1,608,107	-		GFF1579	0.20	+0.5
1,608,114	+		GFF1579	0.21	-1.1
1,608,122	-		GFF1579	0.22	-0.5
1,608,122	-		GFF1579	0.22	-0.1
1,608,145	-		GFF1579	0.24	-1.3
1,608,155	-		GFF1579	0.24	-1.1
1,608,158	-		GFF1579	0.25	-2.9
1,608,163	+		GFF1579	0.25	-0.5
1,608,168	+		GFF1579	0.25	-1.0
1,608,176	-		GFF1579	0.26	+0.7
1,608,176	-		GFF1579	0.26	+1.2
1,608,303	-		GFF1579	0.37	-0.5
1,608,308	+		GFF1579	0.37	-0.3
1,608,338	-		GFF1579	0.40	-1.4
1,608,352	+		GFF1579	0.41	-1.1
1,608,352	+		GFF1579	0.41	-0.6
1,608,360	-		GFF1579	0.41	-0.3
1,608,381	-		GFF1579	0.43	+0.6
1,608,384	+		GFF1579	0.43	-1.4
1,608,384	+		GFF1579	0.43	-2.6
1,608,400	+		GFF1579	0.45	-0.1
1,608,400	+		GFF1579	0.45	-0.5
1,608,403	-		GFF1579	0.45	-0.9
1,608,467	+		GFF1579	0.50	-1.2
1,608,475	+		GFF1579	0.51	-1.2
1,608,477	+		GFF1579	0.51	-0.1
1,608,512	+		GFF1579	0.54	+0.7
1,608,520	-		GFF1579	0.55	+0.2
1,608,527	+		GFF1579	0.55	-2.1
1,608,531	+		GFF1579	0.56	+0.6
1,608,532	+		GFF1579	0.56	-0.1
1,608,570	-		GFF1579	0.59	+0.4
1,608,571	+		GFF1579	0.59	-0.9
1,608,571	+		GFF1579	0.59	+0.4
1,608,571	+		GFF1579	0.59	+0.8
1,608,571	-		GFF1579	0.59	-0.7
1,608,576	+		GFF1579	0.59	-0.9
1,608,576	+		GFF1579	0.59	-1.3
1,608,576	+		GFF1579	0.59	+0.4
1,608,579	-		GFF1579	0.59	+0.4
1,608,579	-		GFF1579	0.59	+0.1
1,608,581	+		GFF1579	0.60	+0.7
1,608,584	-		GFF1579	0.60	-0.6
1,608,589	-		GFF1579	0.60	-0.0
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1,608,591	+		GFF1579	0.60	-1.2
1,608,591	+		GFF1579	0.60	-2.2
1,608,597	+		GFF1579	0.61	-0.3
1,608,597	+		GFF1579	0.61	-1.1
1,608,624	+		GFF1579	0.63	+0.7
1,608,624	+		GFF1579	0.63	-1.6
1,608,632	-		GFF1579	0.64	+0.2
1,608,668	-		GFF1579	0.67	-0.2