Strain Fitness in Sphingobium sp. HT1-2 around GFF1508

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,536,785	+		GFF1507	0.38	+0.2
1,536,785	-		GFF1507	0.38	+0.0
1,536,800	+		GFF1507	0.38	+0.2
1,536,800	+		GFF1507	0.38	-2.5
1,536,800	-		GFF1507	0.38	-0.1
1,536,800	-		GFF1507	0.38	+0.3
1,536,804	-		GFF1507	0.39	-0.0
1,536,804	-		GFF1507	0.39	-1.3
1,536,805	+		GFF1507	0.39	-0.7
1,536,833	-		GFF1507	0.40	-1.0
1,536,836	+		GFF1507	0.41	-0.2
1,536,836	+		GFF1507	0.41	+0.7
1,536,836	+		GFF1507	0.41	-0.3
1,536,844	-		GFF1507	0.41	+0.0
1,536,844	-		GFF1507	0.41	+0.6
1,536,844	-		GFF1507	0.41	-0.9
1,536,844	-		GFF1507	0.41	-0.2
1,536,844	-		GFF1507	0.41	+0.7
1,536,884	+		GFF1507	0.44	+1.3
1,536,886	+		GFF1507	0.44	-2.6
1,536,886	+		GFF1507	0.44	+0.0
1,536,892	-		GFF1507	0.44	+0.5
1,536,894	-		GFF1507	0.44	-1.3
1,536,894	-		GFF1507	0.44	-0.6
1,536,894	-		GFF1507	0.44	-1.2
1,536,909	+		GFF1507	0.45	-0.8
1,536,979	-		GFF1507	0.50	-0.2
1,536,980	+		GFF1507	0.50	+0.8
1,536,984	+		GFF1507	0.50	-2.2
1,537,016	+		GFF1507	0.52	+0.2
1,537,024	-		GFF1507	0.52	+1.1
1,537,024	-		GFF1507	0.52	-1.1
1,537,030	+		GFF1507	0.53	-0.8
1,537,038	-		GFF1507	0.53	-0.2
1,537,038	-		GFF1507	0.53	+1.3
1,537,040	+		GFF1507	0.53	-0.9
1,537,040	+		GFF1507	0.53	+0.3
1,537,048	-		GFF1507	0.54	+1.2
1,537,059	-		GFF1507	0.55	-1.9
1,537,088	-		GFF1507	0.56	+0.4
1,537,089	-		GFF1507	0.56	+0.1
1,537,098	-		GFF1507	0.57	-0.1
1,537,120	-		GFF1507	0.58	+0.5
1,537,131	+		GFF1507	0.59	-0.7
1,537,136	+		GFF1507	0.59	+0.5
1,537,151	+		GFF1507	0.60	-0.4
1,537,160	+		GFF1507	0.61	+0.2
1,537,173	-		GFF1507	0.62	+0.2
1,537,173	-		GFF1507	0.62	+1.3
1,537,175	+		GFF1507	0.62	-1.1
1,537,194	+		GFF1507	0.63	-1.3
1,537,199	+		GFF1507	0.63	+0.8
1,537,199	+		GFF1507	0.63	+0.9
1,537,200	-		GFF1507	0.63	-0.1
1,537,207	-		GFF1507	0.64	-0.5
1,537,207	-		GFF1507	0.64	+0.7
1,537,207	-		GFF1507	0.64	+0.1
1,537,212	+		GFF1507	0.64	-0.4
1,537,220	-		GFF1507	0.65	-1.4
1,537,224	+		GFF1507	0.65	+1.3
1,537,281	+		GFF1507	0.68	+0.8
1,537,281	+		GFF1507	0.68	+0.5
1,537,282	+		GFF1507	0.68	+0.2
1,537,288	-		GFF1507	0.69	+0.0
1,537,289	-		GFF1507	0.69	-1.1
1,537,303	+		GFF1507	0.70	+1.3
1,537,311	-		GFF1507	0.70	-0.2
1,537,325	+		GFF1507	0.71	+0.3
1,537,333	+		GFF1507	0.72	+0.6
1,537,347	+		GFF1507	0.73	+0.7
1,537,347	+		GFF1507	0.73	-0.8
1,537,351	-		GFF1507	0.73	+0.1
1,537,357	+		GFF1507	0.73	-0.8
1,537,357	+		GFF1507	0.73	-0.4
1,537,365	-		GFF1507	0.74	+1.2
1,537,401	+		GFF1507	0.76	+0.4
1,537,431	-		GFF1507	0.78	-0.4
1,537,443	-		GFF1507	0.79	-3.0
1,537,454	+		GFF1507	0.79	+0.9
1,537,454	+		GFF1507	0.79	+0.1
1,537,454	+		GFF1507	0.79	+1.5
1,537,454	+		GFF1507	0.79	+0.4
1,537,454	+		GFF1507	0.79	-0.2
1,537,456	-		GFF1507	0.79	+0.6
1,537,462	-		GFF1507	0.80	+0.5
1,537,462	-		GFF1507	0.80	-1.5
1,537,462	-		GFF1507	0.80	+2.0
1,537,462	-		GFF1507	0.80	-0.1
1,537,462	-		GFF1507	0.80	+0.1
1,537,489	-		GFF1507	0.81	-0.1
1,537,531	-		GFF1507	0.84	-2.1
1,537,542	-		GFF1507	0.85	-0.7
1,537,572	+		GFF1507	0.87	-0.4
1,537,572	+		GFF1507	0.87	-0.7
1,537,572	+		GFF1507	0.87	+0.4
1,537,572	+		GFF1507	0.87	-0.2
1,537,573	+		GFF1507	0.87	-1.7
1,537,573	+		GFF1507	0.87	+0.6
1,537,580	-		GFF1507	0.87	+0.2
1,537,580	-		GFF1507	0.87	-0.2
1,537,580	-		GFF1507	0.87	-0.2
1,537,580	-		GFF1507	0.87	+0.3
1,537,580	-		GFF1507	0.87	-0.0
1,537,580	-		GFF1507	0.87	+0.2
1,537,581	-		GFF1507	0.87	+0.3
1,537,581	-		GFF1507	0.87	-0.1
1,537,581	-		GFF1507	0.87	-0.3
1,537,604	+		GFF1507	0.89	-1.3
1,537,604	+		GFF1507	0.89	+0.1
1,537,604	+		GFF1507	0.89	-2.2
1,537,604	+		GFF1507	0.89	+1.5
1,537,608	+		GFF1507	0.89	-0.6
1,537,612	-		GFF1507	0.89	-0.7
1,537,614	+		GFF1507	0.89	-1.5
1,537,614	+		GFF1507	0.89	-0.1
1,537,615	+		GFF1507	0.89	-1.1
1,537,617	-		GFF1507	0.89	+1.7
1,537,622	-		GFF1507	0.90	-0.3
1,537,622	-		GFF1507	0.90	+0.6
1,537,622	-		GFF1507	0.90	+0.4
1,537,622	-		GFF1507	0.90	+1.0
1,537,627	+				+0.5
1,537,633	+				-0.6
1,537,648	+				+0.7
1,537,648	+				-0.6
1,537,660	-				-0.5
1,537,666	-				+0.4
1,537,670	+				+0.8
1,537,678	-				-0.1
1,537,682	+				-1.8
1,537,688	+				+0.1
1,537,689	-				+0.1
1,537,705	+				+0.3
1,537,713	-				-0.9
1,537,713	-				-1.1
1,537,719	-				-1.6
1,537,740	+				-1.0
1,537,748	-				-0.7
1,537,772	+				-0.4
1,537,789	-				-0.5
1,537,799	-				-1.3
1,537,807	+				-0.2
1,537,820	-				-0.1
1,537,848	+				+0.6
1,537,848	+				-1.0
1,537,848	+				+0.3
1,537,856	-				-0.8
1,537,856	-				-0.1
1,537,856	-				-0.7
1,537,856	-				-0.8
1,537,856	-				-0.1
1,537,860	+				+0.8
1,537,860	+				-0.3
1,537,868	-				+1.2
1,537,868	-				+1.2
1,537,868	-				+0.2
1,537,868	-				-0.2
1,537,868	-				+1.4
1,537,878	+		GFF1508	0.10	+0.1
1,537,878	+		GFF1508	0.10	+0.0
1,537,878	+		GFF1508	0.10	+0.8
1,537,878	+		GFF1508	0.10	-0.2
1,537,878	+		GFF1508	0.10	+0.3
1,537,878	+		GFF1508	0.10	+0.8
1,537,878	+		GFF1508	0.10	-0.8
1,537,878	+		GFF1508	0.10	-1.1
1,537,878	+		GFF1508	0.10	-0.1
1,537,878	+		GFF1508	0.10	+0.4
1,537,878	+		GFF1508	0.10	-0.2
1,537,878	+		GFF1508	0.10	+0.7
1,537,878	+		GFF1508	0.10	+1.7
1,537,883	-		GFF1508	0.11	+0.5
1,537,886	-		GFF1508	0.11	+1.6
1,537,886	-		GFF1508	0.11	+0.2
1,537,886	-		GFF1508	0.11	-0.3
1,537,886	-		GFF1508	0.11	+0.5
1,537,886	-		GFF1508	0.11	-0.2
1,537,886	-		GFF1508	0.11	-1.0
1,537,886	-		GFF1508	0.11	+1.2
1,537,886	-		GFF1508	0.11	-0.2
1,537,891	+		GFF1508	0.11	+0.3
1,537,932	+		GFF1508	0.16	-2.5
1,537,953	-		GFF1508	0.18	-0.6
1,537,954	+		GFF1508	0.18	+0.6
1,537,954	+		GFF1508	0.18	+0.7
1,537,964	+		GFF1508	0.19	+0.1
1,537,964	+		GFF1508	0.19	-0.1
1,537,964	+		GFF1508	0.19	+0.2
1,537,967	-		GFF1508	0.19	+1.5
1,537,969	+		GFF1508	0.20	-0.6
1,537,969	+		GFF1508	0.20	+1.0
1,537,972	-		GFF1508	0.20	-0.7
1,537,987	-		GFF1508	0.22	-0.3
1,538,041	-		GFF1508	0.27	-0.6
1,538,046	-		GFF1508	0.28	-0.9
1,538,076	-		GFF1508	0.31	-1.0
1,538,100	-		GFF1508	0.34	-0.6
1,538,100	-		GFF1508	0.34	-1.8
1,538,102	+		GFF1508	0.34	-1.0
1,538,107	+		GFF1508	0.34	+0.4
1,538,110	-		GFF1508	0.35	-0.6
1,538,120	-		GFF1508	0.36	+0.7
1,538,144	+		GFF1508	0.38	-0.5
1,538,192	+		GFF1508	0.43	-1.8
1,538,197	+		GFF1508	0.44	-0.3
1,538,200	-		GFF1508	0.44	-0.1
1,538,200	-		GFF1508	0.44	-0.2
1,538,200	-		GFF1508	0.44	+0.8
1,538,202	+		GFF1508	0.45	+1.2
1,538,202	+		GFF1508	0.45	-0.4
1,538,205	-		GFF1508	0.45	+1.0
1,538,205	-		GFF1508	0.45	-1.2
1,538,205	-		GFF1508	0.45	-0.2
1,538,210	-		GFF1508	0.45	+0.1
1,538,215	+		GFF1508	0.46	+0.2
1,538,215	+		GFF1508	0.46	-1.3
1,538,299	+		GFF1508	0.55	+1.1
1,538,299	+		GFF1508	0.55	-0.1
1,538,307	-		GFF1508	0.56	+0.1
1,538,307	-		GFF1508	0.56	-0.1
1,538,307	-		GFF1508	0.56	-0.3
1,538,322	+		GFF1508	0.57	-0.3
1,538,322	+		GFF1508	0.57	+0.6
1,538,329	-		GFF1508	0.58	-0.7
1,538,344	-		GFF1508	0.60	+0.4
1,538,349	+		GFF1508	0.60	-0.4
1,538,351	+		GFF1508	0.60	-1.5
1,538,351	-		GFF1508	0.60	+0.2
1,538,354	-		GFF1508	0.61	-0.8
1,538,378	+		GFF1508	0.63	+0.5
1,538,386	-		GFF1508	0.64	+0.2
1,538,398	-		GFF1508	0.65	+1.1
1,538,411	-		GFF1508	0.67	-1.2
1,538,411	-		GFF1508	0.67	+1.2
1,538,411	-		GFF1508	0.67	-1.1
1,538,413	+		GFF1508	0.67	-0.3
1,538,421	-		GFF1508	0.68	-0.5
1,538,422	-		GFF1508	0.68	-0.4
1,538,429	-		GFF1508	0.69	-0.6
1,538,484	+		GFF1508	0.75	-1.7
1,538,497	+		GFF1508	0.76	-0.4
1,538,497	+		GFF1508	0.76	+0.1
1,538,497	+		GFF1508	0.76	-0.4
1,538,497	+		GFF1508	0.76	+0.3
1,538,497	+		GFF1508	0.76	-0.8
1,538,503	+		GFF1508	0.77	-0.7
1,538,507	+		GFF1508	0.77	+0.9
1,538,507	+		GFF1508	0.77	+0.9
1,538,507	+		GFF1508	0.77	-0.5
1,538,507	+		GFF1508	0.77	-0.5
1,538,508	+		GFF1508	0.77	+2.0
1,538,508	+		GFF1508	0.77	-0.3
1,538,508	+		GFF1508	0.77	-0.3
1,538,508	+		GFF1508	0.77	+0.1
1,538,508	+		GFF1508	0.77	+0.6
1,538,508	+		GFF1508	0.77	-0.1
1,538,508	+		GFF1508	0.77	-0.3
1,538,508	+		GFF1508	0.77	+0.7
1,538,508	+		GFF1508	0.77	-0.8
1,538,508	+		GFF1508	0.77	-1.9
1,538,508	+		GFF1508	0.77	-1.2
1,538,508	+		GFF1508	0.77	-1.4
1,538,511	-		GFF1508	0.77	-0.0
1,538,511	-		GFF1508	0.77	-0.8
1,538,511	-		GFF1508	0.77	-0.4
1,538,513	+		GFF1508	0.78	-0.4
1,538,513	+		GFF1508	0.78	+1.4
1,538,515	-		GFF1508	0.78	-0.9
1,538,515	-		GFF1508	0.78	-1.7
1,538,515	-		GFF1508	0.78	-0.6
1,538,515	-		GFF1508	0.78	+0.9
1,538,516	-		GFF1508	0.78	+1.3
1,538,516	-		GFF1508	0.78	+0.3
1,538,516	-		GFF1508	0.78	-0.8
1,538,516	-		GFF1508	0.78	+0.3
1,538,516	-		GFF1508	0.78	-0.5
1,538,516	-		GFF1508	0.78	-1.1
1,538,516	-		GFF1508	0.78	+0.1
1,538,516	-		GFF1508	0.78	-2.0
1,538,516	-		GFF1508	0.78	+0.6
1,538,516	-		GFF1508	0.78	+0.6
1,538,521	-		GFF1508	0.78	-0.2
1,538,521	-		GFF1508	0.78	-1.6
1,538,526	-		GFF1508	0.79	+1.6
1,538,531	-		GFF1508	0.80	-1.1
1,538,536	-		GFF1508	0.80	-0.1
1,538,547	-		GFF1508	0.81	+0.7
1,538,550	+		GFF1508	0.82	-0.9
1,538,614	-		GFF1508	0.88	+0.8
1,538,614	-		GFF1508	0.88	-0.2
1,538,621	+		GFF1508	0.89	+0.6
1,538,639	+				+0.1
1,538,642	-				+0.8
1,538,647	-				-0.6
1,538,701	+				+0.4
1,538,704	-				-0.7
1,538,706	+				-0.1
1,538,706	+				+0.2
1,538,711	+				-1.4
1,538,714	-				+0.6
1,538,714	-				+1.3
1,538,714	-				+0.2
1,538,714	-				+0.2
1,538,716	+				-0.6
1,538,724	+				-0.4
1,538,730	+				-1.1
1,538,732	-				+0.0
1,538,734	+				-1.7
1,538,734	+				+0.8
1,538,734	+				+0.4
1,538,734	+				-0.7
1,538,734	+				+0.0
1,538,734	+				+0.8
1,538,734	+				-0.1
1,538,734	+				-0.2
1,538,734	+				-0.3
1,538,742	-				-0.1
1,538,742	-				-1.1
1,538,742	-				+1.0
1,538,742	-				+0.3
1,538,742	-				+0.1
1,538,742	-				-0.9
1,538,744	+				-0.8
1,538,744	+				+0.4
1,538,744	+				-1.7
1,538,744	+				+0.6
1,538,762	-				+0.8
1,538,762	-				-0.8
1,538,785	-				+0.5
1,538,824	+				-0.3
1,538,827	-				-0.6
1,538,836	+				-0.0
1,538,845	+				-1.6
1,538,845	+				-0.5
1,538,845	+				-0.8
1,538,845	+				-1.5
1,538,853	-				-0.0
1,538,853	-				-1.3
1,538,855	+				-1.4
1,538,866	-				+0.3
1,538,894	+		GFF1509	0.10	-1.6
1,538,902	-		GFF1509	0.11	-0.2
1,538,933	+		GFF1509	0.13	-0.4
1,538,933	+		GFF1509	0.13	+0.7
1,538,933	+		GFF1509	0.13	+0.9
1,538,933	+		GFF1509	0.13	-1.1
1,538,941	-		GFF1509	0.13	+0.6
1,538,996	+		GFF1509	0.17	-1.2
1,539,032	+		GFF1509	0.19	+0.4
1,539,042	+		GFF1509	0.20	-0.8
1,539,058	-		GFF1509	0.21	-0.1
1,539,059	+		GFF1509	0.21	-1.1
1,539,064	+		GFF1509	0.21	+0.9
1,539,064	+		GFF1509	0.21	-0.5
1,539,064	+		GFF1509	0.21	-0.7
1,539,064	+		GFF1509	0.21	-1.1
1,539,064	+		GFF1509	0.21	+1.0
1,539,064	+		GFF1509	0.21	-0.8
1,539,064	+		GFF1509	0.21	-2.5
1,539,067	-		GFF1509	0.22	-0.2
1,539,067	-		GFF1509	0.22	-1.2
1,539,067	-		GFF1509	0.22	-1.5
1,539,067	-		GFF1509	0.22	-2.0
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