Strain Fitness in Sphingobium sp. HT1-2 around GFF1492

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,516,071	+				-2.8
1,516,071	+				-1.4
1,516,074	-				-2.1
1,516,079	-				-1.0
1,516,079	-				-0.5
1,516,093	-				-0.1
1,516,169	+				-0.3
1,516,185	-				+1.1
1,516,198	-				-0.7
1,516,217	+				+0.1
1,516,225	-				-0.2
1,516,226	-				+0.8
1,516,242	+				+0.4
1,516,247	+				+0.2
1,516,247	+				-0.0
1,516,247	+				-1.4
1,516,255	-				+0.8
1,516,261	-				-1.4
1,516,261	-				-1.5
1,516,272	+				-2.4
1,516,280	-		GFF1491	0.11	-0.8
1,516,296	+		GFF1491	0.12	-1.2
1,516,301	+		GFF1491	0.13	-0.0
1,516,304	-		GFF1491	0.13	-0.6
1,516,304	-		GFF1491	0.13	+0.1
1,516,304	-		GFF1491	0.13	-0.4
1,516,313	+		GFF1491	0.14	-0.4
1,516,314	-		GFF1491	0.14	+0.0
1,516,314	-		GFF1491	0.14	-1.8
1,516,314	-		GFF1491	0.14	-1.5
1,516,329	+		GFF1491	0.16	-0.1
1,516,329	+		GFF1491	0.16	-1.2
1,516,343	+		GFF1491	0.18	-1.9
1,516,371	+		GFF1491	0.21	+1.0
1,516,398	+		GFF1491	0.24	+0.8
1,516,398	+		GFF1491	0.24	-0.7
1,516,409	+		GFF1491	0.25	+0.7
1,516,409	+		GFF1491	0.25	+1.2
1,516,413	+		GFF1491	0.26	-0.3
1,516,460	+		GFF1491	0.31	-0.1
1,516,466	+		GFF1491	0.32	-2.0
1,516,477	-		GFF1491	0.33	-0.2
1,516,477	-		GFF1491	0.33	+0.4
1,516,515	+		GFF1491	0.38	-1.1
1,516,522	+		GFF1491	0.38	+0.1
1,516,522	+		GFF1491	0.38	+0.9
1,516,526	+		GFF1491	0.39	+0.3
1,516,527	+		GFF1491	0.39	+0.2
1,516,527	+		GFF1491	0.39	-1.0
1,516,527	+		GFF1491	0.39	-0.5
1,516,527	+		GFF1491	0.39	-0.2
1,516,527	+		GFF1491	0.39	-0.2
1,516,527	+		GFF1491	0.39	-2.1
1,516,527	+		GFF1491	0.39	-0.8
1,516,527	+		GFF1491	0.39	-0.1
1,516,527	+		GFF1491	0.39	+0.1
1,516,527	+		GFF1491	0.39	-0.6
1,516,527	+		GFF1491	0.39	-0.1
1,516,527	+		GFF1491	0.39	+0.2
1,516,527	+		GFF1491	0.39	-0.2
1,516,527	+		GFF1491	0.39	+0.2
1,516,527	+		GFF1491	0.39	-1.0
1,516,527	+		GFF1491	0.39	+0.4
1,516,527	+		GFF1491	0.39	+0.7
1,516,527	+		GFF1491	0.39	+0.1
1,516,527	+		GFF1491	0.39	-0.0
1,516,530	-		GFF1491	0.39	-0.4
1,516,530	-		GFF1491	0.39	+0.7
1,516,535	-		GFF1491	0.40	+0.4
1,516,535	-		GFF1491	0.40	-0.5
1,516,535	-		GFF1491	0.40	+0.9
1,516,535	-		GFF1491	0.40	-0.0
1,516,535	-		GFF1491	0.40	+0.8
1,516,535	-		GFF1491	0.40	-0.2
1,516,535	-		GFF1491	0.40	-2.2
1,516,535	-		GFF1491	0.40	+0.2
1,516,535	-		GFF1491	0.40	-0.1
1,516,535	-		GFF1491	0.40	-0.9
1,516,535	-		GFF1491	0.40	-0.5
1,516,535	-		GFF1491	0.40	-0.5
1,516,586	+		GFF1491	0.46	-1.0
1,516,641	+		GFF1491	0.52	+1.3
1,516,641	+		GFF1491	0.52	+0.7
1,516,646	+		GFF1491	0.53	-0.9
1,516,646	+		GFF1491	0.53	+1.2
1,516,646	+		GFF1491	0.53	-2.3
1,516,646	+		GFF1491	0.53	-0.5
1,516,646	+		GFF1491	0.53	+1.1
1,516,646	+		GFF1491	0.53	-0.0
1,516,646	+		GFF1491	0.53	+0.6
1,516,646	+		GFF1491	0.53	-1.1
1,516,646	+		GFF1491	0.53	-2.6
1,516,646	+		GFF1491	0.53	+0.2
1,516,646	+		GFF1491	0.53	+0.4
1,516,646	+		GFF1491	0.53	+0.7
1,516,646	+		GFF1491	0.53	-0.6
1,516,646	+		GFF1491	0.53	-0.9
1,516,646	+		GFF1491	0.53	-0.3
1,516,646	+		GFF1491	0.53	-0.4
1,516,646	+		GFF1491	0.53	-0.6
1,516,646	+		GFF1491	0.53	+0.8
1,516,646	+		GFF1491	0.53	-0.0
1,516,646	+		GFF1491	0.53	-1.9
1,516,646	+		GFF1491	0.53	+0.1
1,516,646	+		GFF1491	0.53	+0.1
1,516,646	+		GFF1491	0.53	-0.2
1,516,646	+		GFF1491	0.53	-0.9
1,516,648	+		GFF1491	0.53	-1.8
1,516,649	-		GFF1491	0.53	-2.1
1,516,649	-		GFF1491	0.53	+1.1
1,516,653	+		GFF1491	0.53	+0.6
1,516,654	-		GFF1491	0.54	+0.4
1,516,654	-		GFF1491	0.54	-0.1
1,516,654	-		GFF1491	0.54	+1.0
1,516,654	-		GFF1491	0.54	-0.4
1,516,654	-		GFF1491	0.54	-0.5
1,516,654	-		GFF1491	0.54	-0.5
1,516,654	-		GFF1491	0.54	-0.6
1,516,654	-		GFF1491	0.54	-0.8
1,516,654	-		GFF1491	0.54	+0.8
1,516,654	-		GFF1491	0.54	-1.4
1,516,654	-		GFF1491	0.54	-1.4
1,516,654	-		GFF1491	0.54	-0.6
1,516,654	-		GFF1491	0.54	+1.0
1,516,654	-		GFF1491	0.54	-0.2
1,516,654	-		GFF1491	0.54	-0.9
1,516,654	-		GFF1491	0.54	+2.1
1,516,654	-		GFF1491	0.54	-0.4
1,516,671	-		GFF1491	0.56	-1.2
1,516,684	+		GFF1491	0.57	-0.2
1,516,687	-		GFF1491	0.57	+1.1
1,516,715	+		GFF1491	0.61	-0.1
1,516,739	+		GFF1491	0.63	+0.5
1,516,745	+		GFF1491	0.64	-1.4
1,516,745	+		GFF1491	0.64	-0.0
1,516,759	+		GFF1491	0.66	-2.1
1,516,767	-		GFF1491	0.67	-0.5
1,516,776	+		GFF1491	0.68	+0.5
1,516,821	+		GFF1491	0.73	-0.8
1,516,824	-		GFF1491	0.73	-0.0
1,516,829	-		GFF1491	0.74	-0.6
1,516,847	+		GFF1491	0.76	+1.3
1,516,860	+		GFF1491	0.77	-1.5
1,516,860	+		GFF1491	0.77	+1.0
1,516,860	+		GFF1491	0.77	+0.8
1,516,868	-		GFF1491	0.78	+1.8
1,516,868	-		GFF1491	0.78	-1.7
1,516,887	+		GFF1491	0.80	-1.6
1,516,908	+		GFF1491	0.83	+1.1
1,516,908	+		GFF1491	0.83	-0.5
1,516,916	-		GFF1491	0.84	+0.0
1,516,916	-		GFF1491	0.84	-0.4
1,516,916	-		GFF1491	0.84	+0.1
1,516,937	+		GFF1491	0.86	-0.7
1,516,945	-		GFF1491	0.87	-1.2
1,517,061	+				+0.2
1,517,061	+				+1.7
1,517,089	+				-0.5
1,517,090	+				-0.9
1,517,095	+				+0.3
1,517,095	+				-0.2
1,517,098	-				+0.1
1,517,130	+				+0.3
1,517,145	+				+2.3
1,517,208	-				+0.4
1,517,229	+				+0.8
1,517,237	-		GFF1492	0.10	+0.9
1,517,253	-		GFF1492	0.11	+1.1
1,517,275	+		GFF1492	0.12	-1.1
1,517,275	+		GFF1492	0.12	+0.3
1,517,275	+		GFF1492	0.12	+0.3
1,517,275	+		GFF1492	0.12	+0.4
1,517,275	+		GFF1492	0.12	+1.3
1,517,275	+		GFF1492	0.12	-0.7
1,517,275	+		GFF1492	0.12	-0.2
1,517,275	+		GFF1492	0.12	-1.0
1,517,275	+		GFF1492	0.12	+1.1
1,517,275	+		GFF1492	0.12	+0.3
1,517,275	+		GFF1492	0.12	-0.6
1,517,275	+		GFF1492	0.12	-0.9
1,517,275	+		GFF1492	0.12	-1.6
1,517,275	+		GFF1492	0.12	+0.4
1,517,275	+		GFF1492	0.12	+1.1
1,517,275	+		GFF1492	0.12	-0.2
1,517,275	+		GFF1492	0.12	+1.8
1,517,275	+		GFF1492	0.12	+0.8
1,517,275	+		GFF1492	0.12	+0.2
1,517,275	+		GFF1492	0.12	+1.0
1,517,275	+		GFF1492	0.12	-0.6
1,517,275	+		GFF1492	0.12	-0.7
1,517,275	+		GFF1492	0.12	+0.5
1,517,275	+		GFF1492	0.12	-0.7
1,517,275	+		GFF1492	0.12	-0.9
1,517,277	-		GFF1492	0.12	+0.0
1,517,283	-		GFF1492	0.13	-1.5
1,517,283	-		GFF1492	0.13	-2.2
1,517,283	-		GFF1492	0.13	-1.0
1,517,283	-		GFF1492	0.13	-0.7
1,517,283	-		GFF1492	0.13	+0.0
1,517,283	-		GFF1492	0.13	-1.5
1,517,283	-		GFF1492	0.13	-0.2
1,517,283	-		GFF1492	0.13	+0.3
1,517,330	+		GFF1492	0.16	-0.6
1,517,337	+		GFF1492	0.16	+0.6
1,517,373	+		GFF1492	0.18	+1.0
1,517,379	+		GFF1492	0.19	+0.6
1,517,389	+		GFF1492	0.19	+0.2
1,517,389	+		GFF1492	0.19	+0.7
1,517,394	+		GFF1492	0.19	-0.4
1,517,394	+		GFF1492	0.19	+0.7
1,517,394	+		GFF1492	0.19	-0.1
1,517,394	+		GFF1492	0.19	-0.5
1,517,394	+		GFF1492	0.19	-0.6
1,517,394	+		GFF1492	0.19	+1.1
1,517,394	+		GFF1492	0.19	-0.6
1,517,398	+		GFF1492	0.20	+0.8
1,517,402	-		GFF1492	0.20	+2.0
1,517,402	-		GFF1492	0.20	+0.8
1,517,402	-		GFF1492	0.20	+0.9
1,517,402	-		GFF1492	0.20	-2.8
1,517,402	-		GFF1492	0.20	+0.2
1,517,402	-		GFF1492	0.20	-0.6
1,517,402	-		GFF1492	0.20	+0.9
1,517,402	-		GFF1492	0.20	+0.8
1,517,422	+		GFF1492	0.21	+0.6
1,517,448	+		GFF1492	0.23	+0.7
1,517,458	+		GFF1492	0.23	-1.2
1,517,458	+		GFF1492	0.23	-0.4
1,517,458	+		GFF1492	0.23	-2.3
1,517,493	+		GFF1492	0.25	+1.0
1,517,508	+		GFF1492	0.26	+1.2
1,517,508	-		GFF1492	0.26	+0.7
1,517,516	-		GFF1492	0.27	-0.2
1,517,518	+		GFF1492	0.27	+0.5
1,517,524	+		GFF1492	0.27	+0.6
1,517,524	+		GFF1492	0.27	-0.0
1,517,524	+		GFF1492	0.27	-2.2
1,517,524	+		GFF1492	0.27	-0.9
1,517,532	-		GFF1492	0.28	+0.6
1,517,532	-		GFF1492	0.28	-0.5
1,517,545	-		GFF1492	0.28	+0.4
1,517,577	-		GFF1492	0.30	+0.3
1,517,582	-		GFF1492	0.31	-0.6
1,517,582	-		GFF1492	0.31	-0.2
1,517,582	-		GFF1492	0.31	-0.4
1,517,592	-		GFF1492	0.31	-1.2
1,517,602	-		GFF1492	0.32	-1.0
1,517,761	-		GFF1492	0.41	-1.8
1,517,770	-		GFF1492	0.42	-1.8
1,517,787	-		GFF1492	0.43	+0.0
1,517,858	+		GFF1492	0.47	-0.3
1,517,878	+		GFF1492	0.48	+0.2
1,517,905	+		GFF1492	0.50	+1.2
1,517,912	+		GFF1492	0.50	-1.1
1,517,926	-		GFF1492	0.51	+0.2
1,517,926	-		GFF1492	0.51	+1.1
1,517,936	-		GFF1492	0.52	+2.0
1,517,936	-		GFF1492	0.52	-0.0
1,517,938	-		GFF1492	0.52	-0.4
1,517,946	+		GFF1492	0.52	-0.4
1,517,973	+		GFF1492	0.54	+1.4
1,518,002	-		GFF1492	0.55	+1.0
1,518,013	-		GFF1492	0.56	-2.0
1,518,041	-		GFF1492	0.58	-0.6
1,518,041	-		GFF1492	0.58	-0.3
1,518,050	+		GFF1492	0.58	-0.0
1,518,058	-		GFF1492	0.59	+0.1
1,518,071	-		GFF1492	0.60	+0.9
1,518,113	+		GFF1492	0.62	+0.3
1,518,113	+		GFF1492	0.62	-0.1
1,518,121	-		GFF1492	0.62	-0.9
1,518,121	-		GFF1492	0.62	-0.8
1,518,208	+		GFF1492	0.68	+1.3
1,518,216	+		GFF1492	0.68	-0.2
1,518,223	-		GFF1492	0.69	-0.6
1,518,256	+		GFF1492	0.70	+0.9
1,518,280	-		GFF1492	0.72	-0.8
1,518,292	+		GFF1492	0.73	+0.3
1,518,328	-		GFF1492	0.75	-1.0
1,518,364	-		GFF1492	0.77	+0.3
1,518,366	+		GFF1492	0.77	-1.4
1,518,371	+		GFF1492	0.77	+0.2
1,518,373	+		GFF1492	0.77	-0.0
1,518,374	-		GFF1492	0.77	+0.8
1,518,374	-		GFF1492	0.77	+0.4
1,518,381	-		GFF1492	0.78	-1.1
1,518,381	-		GFF1492	0.78	-0.7
1,518,396	+		GFF1492	0.79	+1.0
1,518,401	+		GFF1492	0.79	+2.1
1,518,404	-		GFF1492	0.79	+0.8
1,518,409	+		GFF1492	0.80	+0.8
1,518,409	-		GFF1492	0.80	-0.3
1,518,417	-		GFF1492	0.80	+0.1
1,518,417	-		GFF1492	0.80	+0.5
1,518,440	-		GFF1492	0.81	+0.3
1,518,440	-		GFF1492	0.81	+0.4
1,518,453	+		GFF1492	0.82	+0.4
1,518,454	+		GFF1492	0.82	+0.7
1,518,461	-		GFF1492	0.83	+2.0
1,518,461	-		GFF1492	0.83	-0.4
1,518,462	-		GFF1492	0.83	+0.5
1,518,554	-		GFF1492	0.88	+0.1
1,518,567	+		GFF1492	0.89	-0.7
1,518,575	-		GFF1492	0.89	+0.7
1,518,618	+				+0.8
1,518,618	+				+0.7
1,518,618	+				+0.3
1,518,688	+				+1.1
1,518,693	+				+0.6
1,518,696	+				-0.3
1,518,696	+				+0.8
1,518,704	-				+0.8
1,518,704	-				-0.4
1,518,704	-				+0.1
1,518,754	-				+0.8
1,518,851	+				+0.4
1,518,851	+				-0.6
1,518,896	-				-1.0
1,518,915	-				+1.2
1,518,915	-				-0.5
1,518,953	+				-0.1
1,519,048	+		GFF1493	0.10	+1.7
1,519,049	+		GFF1493	0.10	+0.1
1,519,054	+		GFF1493	0.11	-0.1
1,519,054	+		GFF1493	0.11	+1.0
1,519,054	+		GFF1493	0.11	-1.4
1,519,054	+		GFF1493	0.11	+1.0
1,519,054	+		GFF1493	0.11	+1.1
1,519,057	-		GFF1493	0.11	-0.0
1,519,057	-		GFF1493	0.11	+0.5
1,519,062	-		GFF1493	0.11	-0.2
1,519,062	-		GFF1493	0.11	+0.1
1,519,076	+		GFF1493	0.12	+1.0
1,519,076	+		GFF1493	0.12	+0.2
1,519,089	-		GFF1493	0.13	-0.8
1,519,098	+		GFF1493	0.13	-1.4
1,519,098	+		GFF1493	0.13	-1.1
1,519,098	+		GFF1493	0.13	-0.5
1,519,106	-		GFF1493	0.14	-0.3
1,519,106	-		GFF1493	0.14	+0.1
1,519,110	+		GFF1493	0.14	+0.4
1,519,111	+		GFF1493	0.14	-0.1
1,519,140	+		GFF1493	0.16	+0.5
1,519,181	+		GFF1493	0.18	-1.0
1,519,200	+		GFF1493	0.19	-0.9
1,519,238	-		GFF1493	0.21	+0.5
1,519,241	+		GFF1493	0.21	-0.2
1,519,242	+		GFF1493	0.22	+0.8
1,519,247	-		GFF1493	0.22	-2.0
1,519,249	-		GFF1493	0.22	+0.6
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