Strain Fitness in Sphingobium sp. HT1-2 around GFF1360

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,380,123	+				-0.1
1,380,123	+				-0.2
1,380,136	-				+0.9
1,380,151	+				+0.1
1,380,152	+				-0.8
1,380,157	+				-0.4
1,380,160	-				-0.4
1,380,276	+				-0.0
1,380,289	+		GFF1358	0.12	+0.5
1,380,306	+		GFF1358	0.34	+0.1
1,380,311	+		GFF1358	0.41	+0.9
1,380,311	+		GFF1358	0.41	-0.3
1,380,311	+		GFF1358	0.41	-0.9
1,380,311	+		GFF1358	0.41	+0.3
1,380,368	+				+0.2
1,380,378	+				-1.2
1,380,386	-				-0.2
1,380,407	-				-2.0
1,380,419	-				+0.6
1,380,467	+		GFF1359	0.68	+0.8
1,380,523	+				-0.6
1,380,531	-				-0.4
1,380,587	+				-0.9
1,380,599	+				+2.0
1,380,610	+				+0.3
1,380,610	+				-0.5
1,380,610	+				-0.9
1,380,610	+				-0.3
1,380,618	-				+0.9
1,380,618	-				+0.4
1,380,618	-				-0.8
1,380,620	-				+0.2
1,380,622	+				+0.2
1,380,622	+				+0.8
1,380,628	-				-0.1
1,380,630	+				-0.7
1,380,630	-				-1.0
1,380,633	+				+0.2
1,380,637	+				+1.2
1,380,638	+				-0.5
1,380,641	-				+0.1
1,380,643	+				+0.5
1,380,643	+				+0.5
1,380,645	+				+0.6
1,380,646	-				+0.6
1,380,653	-				-0.2
1,380,653	-				-0.4
1,380,677	+				-0.6
1,380,677	+				-0.8
1,380,685	-				-1.5
1,380,708	+				+0.0
1,380,717	-				-0.7
1,380,730	-				-0.8
1,380,790	+				+0.3
1,380,790	+				+0.7
1,380,790	+				+0.9
1,380,790	+				-1.5
1,380,798	-				-0.4
1,380,798	-				-0.0
1,380,798	-				-0.6
1,380,820	+				-1.5
1,380,836	-				-0.9
1,380,839	+				-0.9
1,380,839	+				+0.3
1,380,840	+				-0.4
1,380,840	+				+1.3
1,380,840	+				+1.0
1,380,840	+				-0.4
1,380,840	+				-1.2
1,380,840	+				-2.4
1,380,840	+				-1.9
1,380,847	+				-0.9
1,380,847	+				-0.4
1,380,847	-				-0.6
1,380,847	-				+0.5
1,380,855	-				-1.8
1,380,873	+				-1.1
1,380,873	+				+0.3
1,380,878	+				-1.9
1,380,881	-				-0.3
1,380,888	-				-2.4
1,380,890	+				-2.5
1,380,898	-				+1.2
1,380,902	+				+0.1
1,380,903	+				+1.0
1,380,907	+				-1.7
1,380,907	+				-0.2
1,380,907	+				-0.9
1,380,913	-				+0.9
1,380,916	+				-2.5
1,380,916	+				-0.2
1,380,916	+				+1.0
1,380,916	+				-0.1
1,380,916	+				-1.4
1,380,924	-				+0.9
1,380,924	-				-2.3
1,380,924	-				+1.1
1,380,934	-				+0.7
1,380,969	+				-2.4
1,380,974	+				-0.2
1,380,979	+				-0.1
1,380,987	-				-0.2
1,380,987	-				+0.6
1,380,987	-				+0.9
1,380,990	+				+0.2
1,380,999	+				-0.4
1,380,999	+				-1.4
1,381,007	-				+1.0
1,381,007	-				-1.0
1,381,007	-				+1.1
1,381,007	-				+0.2
1,381,007	-				-0.7
1,381,012	-				+0.9
1,381,047	+				+0.7
1,381,073	+				+0.9
1,381,073	+				-1.6
1,381,073	+				-0.0
1,381,073	+				-1.8
1,381,073	+				-0.7
1,381,073	+				-0.1
1,381,073	+				-0.4
1,381,073	+				+0.2
1,381,073	+				-0.6
1,381,073	+				-0.5
1,381,073	+				+0.6
1,381,073	+				+0.3
1,381,073	+				-1.8
1,381,073	+				-2.5
1,381,073	+				-0.3
1,381,073	+				+0.8
1,381,073	+				+0.4
1,381,073	+				-0.4
1,381,073	+				+0.5
1,381,073	+				-0.1
1,381,073	+				+0.9
1,381,073	+				-0.5
1,381,073	+				-1.2
1,381,073	+				-1.3
1,381,073	+				+1.5
1,381,073	+				+0.3
1,381,073	+				+0.5
1,381,073	+				-0.3
1,381,073	+				+0.4
1,381,073	+				-0.8
1,381,073	+				-3.2
1,381,073	+				-1.3
1,381,073	+				-0.2
1,381,073	+				+0.9
1,381,073	+				-0.9
1,381,073	+				-1.3
1,381,073	+				-0.3
1,381,073	+				-0.0
1,381,080	+				-0.6
1,381,081	-				+0.1
1,381,081	-				-0.7
1,381,081	-				-0.7
1,381,081	-				+0.8
1,381,081	-				-0.2
1,381,081	-				-0.6
1,381,081	-				-0.3
1,381,081	-				-1.2
1,381,081	-				-0.5
1,381,081	-				+0.7
1,381,081	-				+0.3
1,381,081	-				-0.1
1,381,081	-				-0.6
1,381,081	-				-0.6
1,381,081	-				-1.6
1,381,081	-				-0.7
1,381,081	-				-0.2
1,381,081	-				+0.3
1,381,081	-				+0.5
1,381,081	-				+0.1
1,381,081	-				-0.8
1,381,081	-				-0.1
1,381,081	-				-1.2
1,381,081	-				+1.6
1,381,081	-				-0.1
1,381,081	-				+0.6
1,381,081	-				-2.3
1,381,081	-				+0.2
1,381,081	-				-0.9
1,381,083	+				-0.1
1,381,083	-				-0.2
1,381,083	-				+0.2
1,381,090	+				+0.1
1,381,090	+				-0.1
1,381,090	+				+0.8
1,381,090	+				+0.4
1,381,092	+				-0.3
1,381,092	+				-0.8
1,381,095	+				+0.6
1,381,095	+				-0.4
1,381,095	+				-0.1
1,381,095	+				-0.4
1,381,098	-				-1.1
1,381,098	-				+0.9
1,381,103	-		GFF1360	0.11	-1.4
1,381,103	-		GFF1360	0.11	-1.7
1,381,103	-		GFF1360	0.11	+0.1
1,381,103	-		GFF1360	0.11	+1.4
1,381,103	-		GFF1360	0.11	+0.2
1,381,103	-		GFF1360	0.11	+0.9
1,381,126	+		GFF1360	0.30	-0.1
1,381,131	-		GFF1360	0.34	+0.0
1,381,163	+		GFF1360	0.60	-2.7
1,381,167	-		GFF1360	0.63	-0.4
1,381,174	+		GFF1360	0.69	+0.3
1,381,179	+		GFF1360	0.73	-0.1
1,381,182	-		GFF1360	0.76	-0.7
1,381,186	+		GFF1360	0.79	-1.4
1,381,194	+		GFF1360	0.85	-0.1
1,381,202	-				-0.2
1,381,206	-				+0.6
1,381,211	+				+0.6
1,381,211	+				+1.3
1,381,220	+				+0.5
1,381,222	+				-2.0
1,381,222	+				-1.1
1,381,222	+				+0.5
1,381,225	-				+0.2
1,381,228	-				+0.0
1,381,230	-				+0.5
1,381,250	-				-1.5
1,381,250	-				-0.5
1,381,254	+				+0.1
1,381,298	+				-0.7
1,381,306	-				-1.0
1,381,321	+				-1.6
1,381,329	-				+0.9
1,381,333	+				-0.8
1,381,397	-				-0.4
1,381,447	-				-0.8
1,381,449	+				+0.2
1,381,459	+				-0.4
1,381,459	+				+2.1
1,381,459	+				-0.9
1,381,467	-				-0.7
1,381,493	-				+0.3
1,381,493	-				-0.4
1,381,513	+				-1.2
1,381,573	+				-0.5
1,381,581	-				-0.1
1,381,582	-				+0.5
1,381,584	+				+0.2
1,381,586	+				-1.2
1,381,592	-				-0.1
1,381,597	+				+1.4
1,381,602	+				-0.8
1,381,607	+				-0.5
1,381,607	+				-1.2
1,381,613	-				-0.3
1,381,613	-				-0.1
1,381,613	-				+1.0
1,381,615	-				+0.0
1,381,615	-				-1.1
1,381,617	-				-0.7
1,381,619	+				+0.6
1,381,619	+				+2.1
1,381,619	+				-0.4
1,381,619	+				+0.5
1,381,619	+				-0.1
1,381,619	+				+0.1
1,381,619	+				-0.4
1,381,619	+				-0.7
1,381,619	+				-1.7
1,381,619	+				-1.1
1,381,627	-				+0.3
1,381,627	-				-0.5
1,381,627	-				+0.5
1,381,627	-				-0.3
1,381,627	-				-0.2
1,381,627	-				+0.1
1,381,627	-				-1.3
1,381,627	-				-0.2
1,381,627	-				-2.5
1,381,627	-				-0.7
1,381,634	-				+0.5
1,381,653	-				+0.6
1,381,704	+				+0.6
1,381,704	+				-0.1
1,381,704	+				-0.5
1,381,704	+				-1.1
1,381,704	+				-1.6
1,381,704	+				-1.1
1,381,704	+				+0.6
1,381,704	+				-1.9
1,381,704	+				+0.5
1,381,704	+				-0.9
1,381,704	+				+0.2
1,381,704	+				+0.5
1,381,704	+				-0.1
1,381,712	-				-0.9
1,381,712	-				+0.6
1,381,712	-				-1.1
1,381,712	-				+0.3
1,381,712	-				-0.0
1,381,712	-				-0.3
1,381,712	-				+0.2
1,381,712	-				+0.1
1,381,712	-				+0.4
1,381,712	-				-0.9
1,381,712	-				-1.9
1,381,712	-				-0.1
1,381,719	+		GFF1361	0.10	+0.8
1,381,727	-		GFF1361	0.10	-0.5
1,381,727	-		GFF1361	0.10	-3.2
1,381,755	+		GFF1361	0.11	+0.6
1,381,800	+		GFF1361	0.13	-0.0
1,381,833	-		GFF1361	0.14	-0.0
1,381,835	+		GFF1361	0.14	+0.4
1,381,845	+		GFF1361	0.14	+1.2
1,381,866	+		GFF1361	0.15	-0.7
1,381,866	+		GFF1361	0.15	-0.6
1,381,872	+		GFF1361	0.15	-1.4
1,381,874	-		GFF1361	0.15	-0.9
1,381,874	-		GFF1361	0.15	-1.5
1,381,888	+		GFF1361	0.16	+1.3
1,381,888	+		GFF1361	0.16	-2.1
1,381,888	+		GFF1361	0.16	-1.6
1,381,888	+		GFF1361	0.16	-0.0
1,381,889	-		GFF1361	0.16	-0.4
1,381,891	-		GFF1361	0.16	+0.6
1,381,896	-		GFF1361	0.16	+0.4
1,381,896	-		GFF1361	0.16	-0.6
1,381,896	-		GFF1361	0.16	-0.2
1,381,896	-		GFF1361	0.16	-0.9
1,381,896	-		GFF1361	0.16	-0.2
1,381,933	+		GFF1361	0.17	+1.2
1,381,939	-		GFF1361	0.17	+0.0
1,381,939	-		GFF1361	0.17	-0.8
1,381,960	+		GFF1361	0.18	+0.1
1,381,961	+		GFF1361	0.18	-0.5
1,381,965	+		GFF1361	0.18	-0.6
1,381,969	-		GFF1361	0.18	+1.5
1,381,969	-		GFF1361	0.18	-0.8
1,381,969	-		GFF1361	0.18	-0.8
1,381,975	+		GFF1361	0.19	+0.7
1,381,979	+		GFF1361	0.19	+0.8
1,381,984	+		GFF1361	0.19	+0.8
1,381,984	+		GFF1361	0.19	-0.8
1,382,015	-		GFF1361	0.20	+0.3
1,382,022	+		GFF1361	0.20	-0.6
1,382,030	-		GFF1361	0.20	-0.1
1,382,030	-		GFF1361	0.20	-1.5
1,382,037	+		GFF1361	0.21	-0.7
1,382,037	+		GFF1361	0.21	-0.1
1,382,037	+		GFF1361	0.21	+0.8
1,382,045	-		GFF1361	0.21	-0.4
1,382,047	+		GFF1361	0.21	+1.3
1,382,047	-		GFF1361	0.21	-1.3
1,382,075	+		GFF1361	0.22	-0.5
1,382,080	+		GFF1361	0.22	-1.1
1,382,085	+		GFF1361	0.22	+0.4
1,382,087	+		GFF1361	0.22	-1.4
1,382,093	+		GFF1361	0.23	-0.1
1,382,101	-		GFF1361	0.23	-0.1
1,382,154	-		GFF1361	0.25	-0.9
1,382,171	+		GFF1361	0.25	-0.7
1,382,172	-		GFF1361	0.25	-1.4
1,382,179	-		GFF1361	0.25	+0.3
1,382,179	-		GFF1361	0.25	-1.8