Strain Fitness in Sphingobium sp. HT1-2 around GFF132

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF130 and GFF131 are separated by 49 nucleotidesGFF131 and GFF132 are separated by 167 nucleotidesGFF132 and GFF133 are separated by 0 nucleotides GFF130 - Excinuclease ABC, C subunit-like, at 124,850 to 125,140 GFF130 GFF131 - Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase, at 125,190 to 125,630 GFF131 GFF132 - Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2), at 125,798 to 127,951 GFF132 GFF133 - Biotin synthase (EC 2.8.1.6), at 127,952 to 128,965 GFF133 Position (kb) 125 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 124.825 kb on + strandat 124.830 kb on + strandat 124.830 kb on + strandat 124.840 kb on + strandat 124.862 kb on + strandat 124.862 kb on + strandat 124.862 kb on + strandat 124.862 kb on + strandat 124.862 kb on + strandat 124.894 kb on + strand, within GFF130at 124.895 kb on + strand, within GFF130at 124.895 kb on + strand, within GFF130at 124.895 kb on + strand, within GFF130at 124.897 kb on + strand, within GFF130at 124.899 kb on + strand, within GFF130at 124.899 kb on + strand, within GFF130at 124.902 kb on - strand, within GFF130at 124.902 kb on - strand, within GFF130at 124.905 kb on - strand, within GFF130at 124.910 kb on + strand, within GFF130at 124.911 kb on + strand, within GFF130at 124.911 kb on + strand, within GFF130at 124.911 kb on + strand, within GFF130at 124.911 kb on + strand, within GFF130at 124.912 kb on - strand, within GFF130at 124.929 kb on + strand, within GFF130at 124.956 kb on - strand, within GFF130at 124.956 kb on - strand, within GFF130at 124.956 kb on - strand, within GFF130at 124.996 kb on - strand, within GFF130at 124.996 kb on - strand, within GFF130at 124.998 kb on + strand, within GFF130at 125.006 kb on - strand, within GFF130at 125.016 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.050 kb on - strand, within GFF130at 125.055 kb on - strand, within GFF130at 125.060 kb on - strand, within GFF130at 125.092 kb on + strand, within GFF130at 125.092 kb on + strand, within GFF130at 125.092 kb on + strand, within GFF130at 125.100 kb on - strand, within GFF130at 125.137 kb on - strandat 125.137 kb on - strandat 125.143 kb on - strandat 125.151 kb on + strandat 125.181 kb on + strandat 125.211 kb on - strandat 125.284 kb on + strand, within GFF131at 125.292 kb on - strand, within GFF131at 125.329 kb on - strand, within GFF131at 125.351 kb on - strand, within GFF131at 125.391 kb on + strand, within GFF131at 125.391 kb on + strand, within GFF131at 125.430 kb on - strand, within GFF131at 125.453 kb on - strand, within GFF131at 125.455 kb on + strand, within GFF131at 125.463 kb on - strand, within GFF131at 125.492 kb on + strand, within GFF131at 125.575 kb on - strand, within GFF131at 125.575 kb on - strand, within GFF131at 125.576 kb on + strand, within GFF131at 125.584 kb on - strand, within GFF131at 125.589 kb on - strandat 125.606 kb on - strandat 125.633 kb on - strandat 125.637 kb on - strandat 125.701 kb on + strandat 125.706 kb on + strandat 125.706 kb on + strandat 125.779 kb on + strandat 125.779 kb on + strandat 125.786 kb on + strandat 125.790 kb on + strandat 125.861 kb on + strandat 125.902 kb on + strandat 125.902 kb on + strandat 125.921 kb on + strandat 126.003 kb on - strandat 126.003 kb on - strandat 126.074 kb on + strand, within GFF132at 126.191 kb on - strand, within GFF132at 126.338 kb on - strand, within GFF132at 126.348 kb on + strand, within GFF132at 126.375 kb on - strand, within GFF132at 126.729 kb on + strand, within GFF132at 126.833 kb on - strand, within GFF132at 126.945 kb on - strand, within GFF132at 127.056 kb on - strand, within GFF132at 127.067 kb on + strand, within GFF132at 127.203 kb on + strand, within GFF132at 127.243 kb on + strand, within GFF132at 127.278 kb on - strand, within GFF132at 127.288 kb on - strand, within GFF132at 127.342 kb on - strand, within GFF132at 127.405 kb on - strand, within GFF132at 127.454 kb on + strand, within GFF132at 127.468 kb on - strand, within GFF132at 127.596 kb on - strand, within GFF132at 127.650 kb on - strand, within GFF132at 127.745 kb on - strandat 127.874 kb on + strandat 127.915 kb on + strandat 127.919 kb on - strandat 127.923 kb on - strandat 127.923 kb on - strandat 127.923 kb on - strandat 127.931 kb on + strandat 127.936 kb on + strandat 127.939 kb on - strandat 127.946 kb on + strandat 127.960 kb on + strandat 127.984 kb on + strandat 127.985 kb on + strandat 128.062 kb on - strand, within GFF133at 128.092 kb on + strand, within GFF133at 128.092 kb on + strand, within GFF133at 128.100 kb on + strand, within GFF133at 128.100 kb on - strand, within GFF133at 128.100 kb on - strand, within GFF133at 128.103 kb on - strand, within GFF133at 128.127 kb on + strand, within GFF133at 128.134 kb on + strand, within GFF133at 128.135 kb on - strand, within GFF133at 128.135 kb on - strand, within GFF133at 128.135 kb on - strand, within GFF133at 128.135 kb on - strand, within GFF133at 128.148 kb on + strand, within GFF133at 128.161 kb on - strand, within GFF133at 128.191 kb on + strand, within GFF133at 128.207 kb on - strand, within GFF133at 128.218 kb on - strand, within GFF133at 128.230 kb on + strand, within GFF133at 128.230 kb on + strand, within GFF133at 128.230 kb on + strand, within GFF133at 128.237 kb on + strand, within GFF133at 128.247 kb on + strand, within GFF133at 128.278 kb on - strand, within GFF133at 128.278 kb on - strand, within GFF133at 128.280 kb on + strand, within GFF133at 128.280 kb on + strand, within GFF133at 128.280 kb on + strand, within GFF133at 128.317 kb on + strand, within GFF133at 128.317 kb on + strand, within GFF133at 128.317 kb on + strand, within GFF133at 128.317 kb on + strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.371 kb on - strand, within GFF133at 128.430 kb on - strand, within GFF133at 128.486 kb on + strand, within GFF133at 128.486 kb on + strand, within GFF133at 128.494 kb on - strand, within GFF133at 128.555 kb on + strand, within GFF133at 128.563 kb on - strand, within GFF133at 128.572 kb on - strand, within GFF133at 128.596 kb on + strand, within GFF133at 128.600 kb on + strand, within GFF133at 128.612 kb on + strand, within GFF133at 128.615 kb on + strand, within GFF133at 128.620 kb on - strand, within GFF133at 128.620 kb on - strand, within GFF133at 128.632 kb on - strand, within GFF133at 128.655 kb on + strand, within GFF133at 128.655 kb on - strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.711 kb on + strand, within GFF133at 128.724 kb on + strand, within GFF133at 128.724 kb on + strand, within GFF133at 128.742 kb on - strand, within GFF133at 128.757 kb on + strand, within GFF133at 128.762 kb on + strand, within GFF133at 128.765 kb on - strand, within GFF133at 128.767 kb on + strand, within GFF133at 128.770 kb on - strand, within GFF133at 128.770 kb on - strand, within GFF133at 128.855 kb on + strand, within GFF133at 128.873 kb on + strandat 128.908 kb on + strandat 128.908 kb on + strandat 128.918 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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124,825 + -0.7
124,830 + +1.3
124,830 + -0.4
124,840 + -2.1
124,862 + -0.5
124,862 + -0.8
124,862 + +0.6
124,862 + +0.1
124,862 + -0.9
124,894 + GFF130 0.15 -1.0
124,895 + GFF130 0.15 -0.1
124,895 + GFF130 0.15 +1.0
124,895 + GFF130 0.15 +1.3
124,897 + GFF130 0.16 +0.2
124,899 + GFF130 0.17 -0.5
124,899 + GFF130 0.17 -0.7
124,902 - GFF130 0.18 -1.4
124,902 - GFF130 0.18 -0.7
124,905 - GFF130 0.19 -0.0
124,910 + GFF130 0.21 -0.0
124,911 + GFF130 0.21 +0.3
124,911 + GFF130 0.21 -1.7
124,911 + GFF130 0.21 +0.6
124,911 + GFF130 0.21 +0.3
124,912 - GFF130 0.21 -0.3
124,929 + GFF130 0.27 +0.2
124,956 - GFF130 0.36 +1.0
124,956 - GFF130 0.36 -2.0
124,956 - GFF130 0.36 -0.9
124,996 - GFF130 0.50 -0.4
124,996 - GFF130 0.50 -0.2
124,998 + GFF130 0.51 -0.2
125,006 - GFF130 0.54 -0.8
125,016 + GFF130 0.57 -0.1
125,047 + GFF130 0.68 +2.1
125,047 + GFF130 0.68 +0.6
125,047 + GFF130 0.68 +0.4
125,047 + GFF130 0.68 -0.3
125,047 + GFF130 0.68 -0.2
125,050 - GFF130 0.69 -1.3
125,055 - GFF130 0.70 +0.2
125,060 - GFF130 0.72 -0.7
125,092 + GFF130 0.83 +0.3
125,092 + GFF130 0.83 -0.4
125,092 + GFF130 0.83 -0.4
125,100 - GFF130 0.86 -1.7
125,137 - +1.2
125,137 - +0.0
125,143 - -1.5
125,151 + -0.5
125,181 + +0.6
125,211 - -0.3
125,284 + GFF131 0.21 -0.3
125,292 - GFF131 0.23 -0.0
125,329 - GFF131 0.32 -1.8
125,351 - GFF131 0.37 -1.3
125,391 + GFF131 0.46 -0.0
125,391 + GFF131 0.46 -0.0
125,430 - GFF131 0.54 +0.2
125,453 - GFF131 0.60 -0.4
125,455 + GFF131 0.60 -0.4
125,463 - GFF131 0.62 +0.9
125,492 + GFF131 0.68 -0.6
125,575 - GFF131 0.87 -0.6
125,575 - GFF131 0.87 -0.3
125,576 + GFF131 0.88 -1.6
125,584 - GFF131 0.89 +0.2
125,589 - +0.6
125,606 - -2.1
125,633 - -1.0
125,637 - +1.3
125,701 + -0.3
125,706 + +1.1
125,706 + -0.9
125,779 + +0.7
125,779 + -2.2
125,786 + +0.2
125,790 + +1.6
125,861 + -0.6
125,902 + +0.6
125,902 + -0.0
125,921 + -1.1
126,003 - -0.3
126,003 - +0.2
126,074 + GFF132 0.13 -1.8
126,191 - GFF132 0.18 -0.6
126,338 - GFF132 0.25 +0.7
126,348 + GFF132 0.26 -0.3
126,375 - GFF132 0.27 +0.2
126,729 + GFF132 0.43 +1.4
126,833 - GFF132 0.48 -1.7
126,945 - GFF132 0.53 +0.2
127,056 - GFF132 0.58 +0.6
127,067 + GFF132 0.59 -0.3
127,203 + GFF132 0.65 -0.3
127,243 + GFF132 0.67 -0.4
127,278 - GFF132 0.69 +0.4
127,288 - GFF132 0.69 +0.2
127,342 - GFF132 0.72 -0.3
127,405 - GFF132 0.75 +0.2
127,454 + GFF132 0.77 -0.0
127,468 - GFF132 0.78 +0.2
127,596 - GFF132 0.83 +0.2
127,650 - GFF132 0.86 +0.2
127,745 - +1.2
127,874 + -0.0
127,915 + -0.1
127,919 - +0.0
127,923 - +0.2
127,923 - -0.4
127,923 - -0.4
127,931 + +1.0
127,936 + +0.8
127,939 - +0.4
127,946 + -0.7
127,960 + -0.8
127,984 + +0.6
127,985 + +0.4
128,062 - GFF133 0.11 -0.4
128,092 + GFF133 0.14 +0.1
128,092 + GFF133 0.14 -1.0
128,100 + GFF133 0.15 +0.1
128,100 - GFF133 0.15 +0.7
128,100 - GFF133 0.15 -0.4
128,103 - GFF133 0.15 +0.8
128,127 + GFF133 0.17 +0.7
128,134 + GFF133 0.18 -0.8
128,135 - GFF133 0.18 -1.4
128,135 - GFF133 0.18 +1.3
128,135 - GFF133 0.18 +0.1
128,135 - GFF133 0.18 -1.1
128,148 + GFF133 0.19 -0.9
128,161 - GFF133 0.21 -1.8
128,191 + GFF133 0.24 -0.5
128,207 - GFF133 0.25 -0.1
128,218 - GFF133 0.26 -0.9
128,230 + GFF133 0.27 -0.7
128,230 + GFF133 0.27 -1.2
128,230 + GFF133 0.27 -0.6
128,237 + GFF133 0.28 +0.3
128,247 + GFF133 0.29 +1.6
128,278 - GFF133 0.32 +0.8
128,278 - GFF133 0.32 -1.0
128,280 + GFF133 0.32 -1.3
128,280 + GFF133 0.32 -0.3
128,280 + GFF133 0.32 -0.1
128,317 + GFF133 0.36 -0.3
128,317 + GFF133 0.36 +1.0
128,317 + GFF133 0.36 -0.1
128,317 + GFF133 0.36 -1.2
128,325 - GFF133 0.37 +0.3
128,325 - GFF133 0.37 -0.1
128,325 - GFF133 0.37 -0.8
128,325 - GFF133 0.37 -0.3
128,325 - GFF133 0.37 +0.4
128,371 - GFF133 0.41 -1.7
128,430 - GFF133 0.47 -1.8
128,486 + GFF133 0.53 +0.2
128,486 + GFF133 0.53 -0.3
128,494 - GFF133 0.53 -0.9
128,555 + GFF133 0.59 +0.2
128,563 - GFF133 0.60 -0.7
128,572 - GFF133 0.61 -0.4
128,596 + GFF133 0.64 -0.6
128,600 + GFF133 0.64 -0.0
128,612 + GFF133 0.65 +0.4
128,615 + GFF133 0.65 +0.6
128,620 - GFF133 0.66 +1.1
128,620 - GFF133 0.66 +0.7
128,632 - GFF133 0.67 -0.5
128,655 + GFF133 0.69 -0.0
128,655 - GFF133 0.69 +0.4
128,660 + GFF133 0.70 -0.9
128,660 + GFF133 0.70 -2.1
128,660 + GFF133 0.70 -1.7
128,660 + GFF133 0.70 +1.6
128,660 + GFF133 0.70 -0.6
128,668 - GFF133 0.71 -1.1
128,668 - GFF133 0.71 +0.2
128,668 - GFF133 0.71 +0.0
128,668 - GFF133 0.71 +1.5
128,668 - GFF133 0.71 +0.3
128,668 - GFF133 0.71 -1.8
128,668 - GFF133 0.71 +0.0
128,668 - GFF133 0.71 -0.4
128,711 + GFF133 0.75 +1.4
128,724 + GFF133 0.76 +0.0
128,724 + GFF133 0.76 -1.0
128,742 - GFF133 0.78 +0.3
128,757 + GFF133 0.79 -1.6
128,762 + GFF133 0.80 -0.6
128,765 - GFF133 0.80 -1.1
128,767 + GFF133 0.80 +0.1
128,770 - GFF133 0.81 +1.2
128,770 - GFF133 0.81 -0.0
128,855 + GFF133 0.89 -0.3
128,873 + +0.7
128,908 + +1.8
128,908 + -0.7
128,918 + +1.6

Or see this region's nucleotide sequence