Strain Fitness in Sphingobium sp. HT1-2 around GFF1316

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,346,726	+		GFF1315	0.75	-1.5
1,346,726	+		GFF1315	0.75	-1.4
1,346,726	+		GFF1315	0.75	+0.6
1,346,726	+		GFF1315	0.75	+0.5
1,346,727	-		GFF1315	0.75	-1.0
1,346,727	-		GFF1315	0.75	+1.5
1,346,729	+		GFF1315	0.75	-1.3
1,346,732	-		GFF1315	0.75	-0.9
1,346,732	-		GFF1315	0.75	+0.3
1,346,732	-		GFF1315	0.75	-0.3
1,346,732	-		GFF1315	0.75	+0.3
1,346,732	-		GFF1315	0.75	-1.3
1,346,732	-		GFF1315	0.75	-0.0
1,346,732	-		GFF1315	0.75	-1.0
1,346,732	-		GFF1315	0.75	+0.4
1,346,732	-		GFF1315	0.75	-0.4
1,346,734	-		GFF1315	0.75	-0.8
1,346,734	-		GFF1315	0.75	-1.4
1,346,734	-		GFF1315	0.75	-0.2
1,346,782	+		GFF1315	0.76	-0.8
1,346,798	+		GFF1315	0.77	-0.3
1,346,798	+		GFF1315	0.77	-0.8
1,346,798	+		GFF1315	0.77	-0.8
1,346,806	-		GFF1315	0.77	+0.4
1,346,807	+		GFF1315	0.77	-1.0
1,346,830	+		GFF1315	0.78	+1.1
1,346,842	+		GFF1315	0.78	+0.4
1,346,851	+		GFF1315	0.78	+0.5
1,346,852	+		GFF1315	0.78	-0.8
1,346,859	-		GFF1315	0.78	+0.5
1,346,864	-		GFF1315	0.79	+0.5
1,346,869	+		GFF1315	0.79	+0.1
1,346,872	-		GFF1315	0.79	-0.2
1,346,887	+		GFF1315	0.79	+0.2
1,346,929	+		GFF1315	0.80	+0.5
1,346,937	-		GFF1315	0.80	-1.3
1,347,067	+		GFF1315	0.84	-1.0
1,347,076	-		GFF1315	0.84	+0.1
1,347,115	+		GFF1315	0.85	-1.6
1,347,144	+		GFF1315	0.86	-0.1
1,347,144	+		GFF1315	0.86	-0.8
1,347,144	+		GFF1315	0.86	+1.4
1,347,144	+		GFF1315	0.86	-1.1
1,347,144	+		GFF1315	0.86	+0.1
1,347,144	+		GFF1315	0.86	-0.9
1,347,144	+		GFF1315	0.86	+0.6
1,347,144	+		GFF1315	0.86	-0.6
1,347,144	+		GFF1315	0.86	+1.7
1,347,152	-		GFF1315	0.86	+0.5
1,347,152	-		GFF1315	0.86	-1.1
1,347,152	-		GFF1315	0.86	-1.3
1,347,152	-		GFF1315	0.86	-1.2
1,347,152	-		GFF1315	0.86	-0.9
1,347,152	-		GFF1315	0.86	+0.2
1,347,152	-		GFF1315	0.86	+0.2
1,347,176	+		GFF1315	0.87	+0.8
1,347,195	+		GFF1315	0.87	-0.6
1,347,213	+		GFF1315	0.88	-1.1
1,347,213	-		GFF1315	0.88	-0.1
1,347,260	-		GFF1315	0.89	+1.5
1,347,281	-		GFF1315	0.89	-0.5
1,347,293	+		GFF1315	0.90	-0.6
1,347,293	+		GFF1315	0.90	+0.5
1,347,293	+		GFF1315	0.90	+1.3
1,347,293	+		GFF1315	0.90	-0.4
1,347,293	+		GFF1315	0.90	-0.9
1,347,293	+		GFF1315	0.90	-0.9
1,347,293	+		GFF1315	0.90	-1.2
1,347,293	+		GFF1315	0.90	-0.1
1,347,293	+		GFF1315	0.90	-0.0
1,347,293	+		GFF1315	0.90	+0.9
1,347,295	-		GFF1315	0.90	-0.3
1,347,298	+		GFF1315	0.90	-0.9
1,347,298	+		GFF1315	0.90	-0.1
1,347,301	-		GFF1315	0.90	+0.5
1,347,301	-		GFF1315	0.90	-0.1
1,347,301	-		GFF1315	0.90	+0.1
1,347,301	-		GFF1315	0.90	-0.2
1,347,301	-		GFF1315	0.90	+1.1
1,347,301	-		GFF1315	0.90	+0.2
1,347,301	-		GFF1315	0.90	+0.5
1,347,301	-		GFF1315	0.90	-1.9
1,347,301	-		GFF1315	0.90	-1.1
1,347,301	-		GFF1315	0.90	-0.4
1,347,301	-		GFF1315	0.90	+1.0
1,347,306	-		GFF1315	0.90	+0.1
1,347,308	+				-2.4
1,347,316	+				-0.3
1,347,316	+				+1.3
1,347,316	+				-1.3
1,347,316	+				-0.3
1,347,316	+				-0.5
1,347,316	+				+0.2
1,347,316	+				-2.7
1,347,316	+				+1.1
1,347,316	+				+0.6
1,347,316	+				-1.3
1,347,316	+				-0.6
1,347,316	+				-1.8
1,347,316	+				-0.3
1,347,316	+				-0.4
1,347,316	+				-2.7
1,347,316	+				+0.6
1,347,316	+				-0.1
1,347,316	+				-1.6
1,347,316	+				+1.0
1,347,316	+				-1.0
1,347,316	+				+1.1
1,347,316	+				-0.6
1,347,316	+				+0.1
1,347,316	+				-0.5
1,347,316	-				+0.2
1,347,318	+				-1.4
1,347,324	-				-0.1
1,347,324	-				-0.9
1,347,324	-				-0.3
1,347,324	-				+0.7
1,347,324	-				+0.3
1,347,324	-				-0.9
1,347,324	-				+0.2
1,347,324	-				+0.2
1,347,324	-				-2.0
1,347,324	-				+0.2
1,347,324	-				-0.2
1,347,324	-				-1.6
1,347,324	-				-1.1
1,347,324	-				-1.5
1,347,324	-				+0.1
1,347,324	-				+0.2
1,347,324	-				-1.3
1,347,324	-				+0.8
1,347,324	-				-1.8
1,347,324	-				-1.6
1,347,324	-				-0.0
1,347,324	-				+1.1
1,347,324	-				+0.2
1,347,325	+				-2.4
1,347,326	-				+0.7
1,347,383	-				+0.1
1,347,385	+				-0.6
1,347,385	+				+0.2
1,347,385	+				-0.1
1,347,388	-				+0.3
1,347,393	-				-0.8
1,347,393	-				-2.6
1,347,393	-				+0.0
1,347,393	-				+0.6
1,347,393	-				-0.1
1,347,393	-				-0.9
1,347,398	-				+1.0
1,347,435	-				-1.6
1,347,446	+				+0.6
1,347,455	+				+0.4
1,347,482	+				+0.5
1,347,482	-				-1.4
1,347,490	-				-0.2
1,347,497	+				+1.5
1,347,510	+				+0.8
1,347,518	-				-1.1
1,347,530	-				-2.4
1,347,544	-				-0.7
1,347,544	-				-0.5
1,347,565	-				-0.3
1,347,567	+				+0.7
1,347,567	+				-0.7
1,347,581	+				-0.5
1,347,581	+				+0.4
1,347,586	+				-0.5
1,347,586	+				-0.7
1,347,594	-				+0.2
1,347,594	-				+1.5
1,347,594	-				-0.1
1,347,612	-				+0.7
1,347,614	+				+0.9
1,347,629	+				-0.5
1,347,629	+				-2.6
1,347,629	+				-0.7
1,347,634	+				+1.3
1,347,637	-				+0.1
1,347,637	-				+1.1
1,347,637	-				+1.3
1,347,639	+				+0.1
1,347,642	-				+0.4
1,347,686	+				-0.9
1,347,689	-				-1.1
1,347,694	-				-0.2
1,347,698	-				+1.8
1,347,700	+				+1.2
1,347,700	+				+0.4
1,347,708	-				-1.0
1,347,710	+				+0.3
1,347,729	+				+0.0
1,347,729	+				-0.7
1,347,744	+				-0.0
1,347,751	+				-0.7
1,347,762	+		GFF1316	0.12	+1.1
1,347,776	+		GFF1316	0.17	-3.3
1,347,776	+		GFF1316	0.17	+0.2
1,347,776	+		GFF1316	0.17	-2.1
1,347,776	+		GFF1316	0.17	-1.4
1,347,776	+		GFF1316	0.17	+0.9
1,347,777	+		GFF1316	0.18	-1.3
1,347,784	-		GFF1316	0.20	+0.2
1,347,784	-		GFF1316	0.20	-1.6
1,347,784	-		GFF1316	0.20	-0.3
1,347,787	+		GFF1316	0.21	-0.3
1,347,787	+		GFF1316	0.21	-2.2
1,347,787	+		GFF1316	0.21	-0.5
1,347,787	+		GFF1316	0.21	+0.9
1,347,787	+		GFF1316	0.21	+0.1
1,347,795	-		GFF1316	0.24	-0.6
1,347,795	-		GFF1316	0.24	-1.4
1,347,804	+		GFF1316	0.27	-1.1
1,347,805	+		GFF1316	0.27	+1.1
1,347,805	+		GFF1316	0.27	-0.0
1,347,809	+		GFF1316	0.29	-0.6
1,347,829	-		GFF1316	0.36	-0.9
1,347,860	+		GFF1316	0.47	-0.9
1,347,867	-		GFF1316	0.49	-1.2
1,347,875	+		GFF1316	0.52	+1.0
1,347,875	-		GFF1316	0.52	-0.3
1,347,883	-		GFF1316	0.55	+0.4
1,347,883	-		GFF1316	0.55	+0.2
1,347,883	-		GFF1316	0.55	+1.3
1,347,883	-		GFF1316	0.55	+0.4
1,347,885	-		GFF1316	0.55	+0.9
1,347,898	+		GFF1316	0.60	-0.1
1,347,898	+		GFF1316	0.60	-0.8
1,347,898	+		GFF1316	0.60	+0.8
1,347,906	-		GFF1316	0.62	-0.3
1,347,906	-		GFF1316	0.62	+0.5
1,347,906	-		GFF1316	0.62	+0.5
1,347,908	+		GFF1316	0.63	-1.5
1,347,908	+		GFF1316	0.63	+0.2
1,347,910	-		GFF1316	0.64	+0.9
1,347,910	-		GFF1316	0.64	-0.5
1,347,916	-		GFF1316	0.66	-0.6
1,347,944	+		GFF1316	0.76	-0.3
1,347,944	+		GFF1316	0.76	+0.1
1,347,944	+		GFF1316	0.76	+1.5
1,347,944	+		GFF1316	0.76	-0.5
1,347,944	+		GFF1316	0.76	-1.1
1,347,946	+		GFF1316	0.76	-0.8
1,347,946	+		GFF1316	0.76	+1.2
1,347,946	+		GFF1316	0.76	-0.8
1,347,952	-		GFF1316	0.78	+0.5
1,347,952	-		GFF1316	0.78	+0.9
1,347,952	-		GFF1316	0.78	-1.9
1,347,952	-		GFF1316	0.78	+0.1
1,347,952	-		GFF1316	0.78	+1.1
1,347,954	+		GFF1316	0.79	+0.5
1,347,954	-		GFF1316	0.79	-0.5
1,347,954	-		GFF1316	0.79	+0.4
1,347,957	-		GFF1316	0.80	-0.8
1,347,969	+		GFF1316	0.84	-0.2
1,347,970	-		GFF1316	0.85	+0.1
1,347,970	-		GFF1316	0.85	+1.1
1,347,982	+		GFF1316	0.89	+0.6
1,347,982	+		GFF1316	0.89	-0.0
1,347,982	+		GFF1316	0.89	-0.6
1,347,990	-				+0.5
1,347,995	+				-2.1
1,348,000	+				-1.2
1,348,010	+				-0.2
1,348,029	-				+0.3
1,348,029	-				+0.3
1,348,029	-				-1.1
1,348,037	+				+1.4
1,348,037	-				-0.7
1,348,045	+				-0.3
1,348,121	+		GFF1317	0.12	+1.4
1,348,144	-		GFF1317	0.17	-1.8
1,348,144	-		GFF1317	0.17	+0.5
1,348,144	-		GFF1317	0.17	+0.8
1,348,198	-		GFF1317	0.29	+0.5
1,348,198	-		GFF1317	0.29	+0.3
1,348,222	+		GFF1317	0.34	-1.1
1,348,222	+		GFF1317	0.34	-1.4
1,348,222	+		GFF1317	0.34	+0.6
1,348,222	+		GFF1317	0.34	-1.1
1,348,222	+		GFF1317	0.34	+0.3
1,348,222	+		GFF1317	0.34	-0.6
1,348,222	+		GFF1317	0.34	-1.6
1,348,230	-		GFF1317	0.36	+0.6
1,348,230	-		GFF1317	0.36	-1.6
1,348,230	-		GFF1317	0.36	+1.2
1,348,230	-		GFF1317	0.36	-0.4
1,348,230	-		GFF1317	0.36	-0.2
1,348,230	-		GFF1317	0.36	+0.8
1,348,230	-		GFF1317	0.36	+1.3
1,348,230	-		GFF1317	0.36	-1.1
1,348,230	-		GFF1317	0.36	-1.6
1,348,258	+		GFF1317	0.42	-0.2
1,348,258	+		GFF1317	0.42	-1.3
1,348,266	-		GFF1317	0.44	-0.3
1,348,266	-		GFF1317	0.44	+0.1
1,348,266	-		GFF1317	0.44	-0.2
1,348,276	-		GFF1317	0.46	-0.5
1,348,289	-		GFF1317	0.49	-2.4
1,348,291	+		GFF1317	0.49	-0.4
1,348,291	+		GFF1317	0.49	-0.4
1,348,299	+		GFF1317	0.51	-0.0
1,348,299	-		GFF1317	0.51	-0.6
1,348,303	+		GFF1317	0.52	+0.9
1,348,311	-		GFF1317	0.54	+0.7
1,348,311	-		GFF1317	0.54	-0.2
1,348,331	+		GFF1317	0.58	+0.6
1,348,331	+		GFF1317	0.58	-1.3
1,348,331	+		GFF1317	0.58	+1.2
1,348,331	+		GFF1317	0.58	-1.3
1,348,331	+		GFF1317	0.58	+1.1
1,348,331	+		GFF1317	0.58	-1.4
1,348,331	+		GFF1317	0.58	-0.9
1,348,331	+		GFF1317	0.58	+0.3
1,348,331	+		GFF1317	0.58	-0.8
1,348,331	+		GFF1317	0.58	-0.6
1,348,331	+		GFF1317	0.58	+0.4
1,348,331	+		GFF1317	0.58	+1.1
1,348,331	+		GFF1317	0.58	+0.2
1,348,331	+		GFF1317	0.58	-0.0
1,348,331	+		GFF1317	0.58	+0.5
1,348,331	+		GFF1317	0.58	+1.3
1,348,339	-		GFF1317	0.60	+0.2
1,348,339	-		GFF1317	0.60	-0.5
1,348,339	-		GFF1317	0.60	-0.3
1,348,339	-		GFF1317	0.60	+1.6
1,348,339	-		GFF1317	0.60	+0.5
1,348,339	-		GFF1317	0.60	+0.1
1,348,339	-		GFF1317	0.60	+0.3
1,348,339	-		GFF1317	0.60	+0.6
1,348,339	-		GFF1317	0.60	+1.7
1,348,346	-		GFF1317	0.62	-0.1
1,348,365	+		GFF1317	0.66	-1.2
1,348,366	-		GFF1317	0.66	+0.1
1,348,372	+		GFF1317	0.67	+1.2
1,348,373	-		GFF1317	0.68	-0.6
1,348,391	-		GFF1317	0.72	+0.0
1,348,410	-		GFF1317	0.76	-0.2
1,348,420	-		GFF1317	0.78	+0.8
1,348,420	-		GFF1317	0.78	+1.0
1,348,420	-		GFF1317	0.78	-0.4
1,348,427	-		GFF1317	0.79	-1.3
1,348,427	-		GFF1317	0.79	+0.4
1,348,435	+		GFF1317	0.81	+1.1
1,348,447	+		GFF1317	0.84	-1.6
1,348,519	+				+0.2
1,348,527	-				-0.0
1,348,548	+				-2.4
1,348,548	+				-0.8
1,348,571	+				-0.3
1,348,575	+				+0.1
1,348,588	-				+0.4
1,348,594	+				-0.3
1,348,597	-				-0.1
1,348,608	+				-0.2
1,348,608	+				+0.5
1,348,608	+				-0.4
1,348,608	+				-0.3
1,348,608	+				-0.3
1,348,608	+				+0.7
1,348,608	+				-0.4
1,348,608	+				-0.9
1,348,616	-				-0.0
1,348,616	-				-0.4
1,348,616	-				-1.9
1,348,631	+				+0.7
1,348,631	+				-0.4
1,348,631	+				-0.8
1,348,670	-				-0.2
1,348,676	+				-0.4
1,348,676	+				-0.7
1,348,676	+				-1.7
1,348,682	+				-3.3
1,348,682	+				-0.4
1,348,682	+				+1.1
1,348,693	+				-1.3
1,348,701	-				-0.3
1,348,702	-				+1.3
1,348,703	+		GFF1318	0.10	+0.4
1,348,711	-		GFF1318	0.11	-1.1
1,348,731	+		GFF1318	0.13	+0.1
1,348,740	+		GFF1318	0.14	+0.7
1,348,740	+		GFF1318	0.14	-0.2
1,348,741	+		GFF1318	0.14	-0.4
1,348,741	+		GFF1318	0.14	-0.8
1,348,741	-		GFF1318	0.14	+0.5
1,348,748	-		GFF1318	0.15	+0.2
1,348,748	-		GFF1318	0.15	-0.2
1,348,749	-		GFF1318	0.15	-0.5
1,348,764	+		GFF1318	0.17	+0.6
1,348,764	+		GFF1318	0.17	+0.1
1,348,768	-		GFF1318	0.17	+0.3
1,348,772	-		GFF1318	0.18	-0.4
1,348,784	-		GFF1318	0.19	-2.4
1,348,791	-		GFF1318	0.20	+0.1
1,348,821	-		GFF1318	0.23	+0.5
1,348,823	+		GFF1318	0.23	-0.1
1,348,847	+		GFF1318	0.26	-0.9
1,348,855	-		GFF1318	0.27	+1.4
1,348,857	-		GFF1318	0.27	-1.4
1,348,914	-		GFF1318	0.33	-1.5
1,348,914	-		GFF1318	0.33	-0.9
1,348,914	-		GFF1318	0.33	-0.1
1,348,914	-		GFF1318	0.33	+0.2
1,348,919	+		GFF1318	0.34	-1.9
1,348,919	+		GFF1318	0.34	-0.8
1,348,927	-		GFF1318	0.35	-1.7
1,348,927	-		GFF1318	0.35	+0.7
1,348,932	-		GFF1318	0.35	+1.2
1,348,937	+		GFF1318	0.36	-0.1
1,348,937	+		GFF1318	0.36	-0.4
1,348,937	+		GFF1318	0.36	+0.4
1,348,937	+		GFF1318	0.36	+0.4
1,348,937	+		GFF1318	0.36	+1.1
1,348,937	+		GFF1318	0.36	-2.0
1,348,937	+		GFF1318	0.36	+1.1
1,348,937	+		GFF1318	0.36	+0.3
1,348,939	-		GFF1318	0.36	+1.3
1,348,945	-		GFF1318	0.37	+0.6
1,348,945	-		GFF1318	0.37	-0.2
1,348,945	-		GFF1318	0.37	+1.2
1,348,945	-		GFF1318	0.37	-0.4
1,348,945	-		GFF1318	0.37	+0.1
1,348,945	-		GFF1318	0.37	+1.1
1,348,945	-		GFF1318	0.37	-0.3
1,348,945	-		GFF1318	0.37	+1.2
1,348,945	-		GFF1318	0.37	-0.8
1,348,978	-		GFF1318	0.40	-0.6
1,348,986	-		GFF1318	0.41	+0.0
1,348,993	+		GFF1318	0.42	-0.5
1,349,003	+		GFF1318	0.43	-0.3