Strain Fitness in Sphingobium sp. HT1-2 around GFF1300

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,327,723	-				-0.6
1,327,729	-				+1.0
1,327,729	-				-0.8
1,327,934	-		GFF1299	0.44	-0.8
1,327,934	-		GFF1299	0.44	-1.1
1,327,940	-		GFF1299	0.45	-1.6
1,328,102	-		GFF1299	0.79	-2.0
1,328,102	-		GFF1299	0.79	-2.2
1,328,102	-		GFF1299	0.79	-3.4
1,328,102	-		GFF1299	0.79	-1.9
1,328,180	-				-2.0
1,328,240	-				-0.6
1,328,289	-				+0.8
1,328,317	+				+0.7
1,328,325	+				+0.8
1,328,401	-				+0.9
1,328,428	+				-0.2
1,328,439	+				+0.5
1,328,455	+				-1.6
1,328,499	-				-1.1
1,328,499	-				-1.3
1,328,562	+		GFF1300	0.18	-0.4
1,328,562	+		GFF1300	0.18	-0.0
1,328,562	+		GFF1300	0.18	-1.2
1,328,562	+		GFF1300	0.18	-0.6
1,328,562	+		GFF1300	0.18	-0.6
1,328,562	+		GFF1300	0.18	-2.5
1,328,562	+		GFF1300	0.18	-2.8
1,328,562	+		GFF1300	0.18	-2.1
1,328,570	-		GFF1300	0.19	-1.7
1,328,570	-		GFF1300	0.19	-1.3
1,328,570	-		GFF1300	0.19	+0.6
1,328,667	-		GFF1300	0.33	-0.4
1,328,733	-		GFF1300	0.43	-1.1
1,328,742	-		GFF1300	0.44	-1.2
1,328,801	-		GFF1300	0.52	-1.2
1,328,801	-		GFF1300	0.52	-1.4
1,328,837	+		GFF1300	0.58	-0.0
1,328,840	-		GFF1300	0.58	-1.0
1,328,859	-		GFF1300	0.61	-0.4
1,328,923	+		GFF1300	0.70	-2.1
1,328,938	-		GFF1300	0.72	-1.7
1,328,951	+		GFF1300	0.74	-1.0
1,328,951	+		GFF1300	0.74	-2.0
1,328,951	+		GFF1300	0.74	-2.1
1,328,959	-		GFF1300	0.75	-1.5
1,328,959	-		GFF1300	0.75	-0.7
1,328,959	-		GFF1300	0.75	-0.8
1,328,959	-		GFF1300	0.75	-0.9
1,328,964	+		GFF1300	0.76	-0.0
1,328,964	+		GFF1300	0.76	-2.6
1,328,964	+		GFF1300	0.76	-2.8
1,328,972	-		GFF1300	0.77	-0.8
1,329,035	+		GFF1300	0.86	-1.2
1,329,092	+				-2.2
1,329,153	-				+0.2
1,329,160	-				-0.2
1,329,204	-				+0.5
1,329,206	+				+0.5
1,329,206	+				+0.6
1,329,206	+				+0.1
1,329,206	+				+0.3
1,329,206	+				+0.5
1,329,206	+				+0.6
1,329,206	+				+0.3
1,329,206	+				+0.6
1,329,206	+				-0.3
1,329,211	+				+0.1
1,329,211	+				-0.2
1,329,211	+				-1.5
1,329,214	-				-0.6
1,329,214	-				+0.6
1,329,214	-				-0.4
1,329,214	-				+0.4
1,329,214	-				+0.4
1,329,219	-				+0.4
1,329,219	-				+2.1
1,329,257	-				+0.2
1,329,326	+				-0.5
1,329,331	+				-2.1
1,329,339	-				+0.1
1,329,358	+				+0.8
1,329,368	+				+0.1
1,329,368	+				+0.1
1,329,368	+				+0.7
1,329,368	+				-0.9
1,329,368	+				+1.0
1,329,368	+				+0.2
1,329,368	+				+0.5
1,329,368	+				-0.1
1,329,368	+				+1.6
1,329,368	+				+0.3
1,329,368	+				+0.9
1,329,368	+				+0.1
1,329,368	+				-0.5
1,329,368	+				-1.8
1,329,368	+				+0.5
1,329,368	+				-0.3
1,329,368	+				-0.7
1,329,368	+				+1.3
1,329,368	+				+0.8
1,329,368	+				+1.4
1,329,368	+				-0.0
1,329,368	+				+3.1
1,329,368	+				-1.8
1,329,368	+				+0.8
1,329,368	+				+0.2
1,329,368	+				+0.2
1,329,368	+				-1.6
1,329,368	+				-1.4
1,329,368	+				+0.4
1,329,368	+				+1.3
1,329,368	+				+0.3
1,329,373	+				+1.1
1,329,376	-				-0.4
1,329,376	-				+0.3
1,329,376	-				-1.8
1,329,376	-				-0.7
1,329,376	-				-0.9
1,329,376	-				-0.8
1,329,376	-				-1.6
1,329,376	-				+2.0
1,329,376	-				-0.3
1,329,376	-				+0.9
1,329,376	-				+0.2
1,329,376	-				+0.2
1,329,376	-				+0.7
1,329,376	-				+0.5
1,329,376	-				+0.0
1,329,376	-				+0.9
1,329,376	-				+0.6
1,329,376	-				-0.4
1,329,376	-				-0.3
1,329,376	-				-0.0
1,329,376	-				+0.9
1,329,376	-				-0.3
1,329,376	-				+0.7
1,329,376	-				+0.8
1,329,376	-				+1.4
1,329,378	+				-0.9
1,329,378	+				+0.2
1,329,386	-				-0.4
1,329,386	-				-0.2
1,329,386	-				-0.0
1,329,386	-				-0.2
1,329,391	+				-1.1
1,329,409	-				+0.6
1,329,409	-				+0.6
1,329,446	+				+0.2
1,329,470	+				-0.3
1,329,470	+				+0.2
1,329,471	-		GFF1301	0.10	-0.3
1,329,478	-		GFF1301	0.10	-0.7
1,329,478	-		GFF1301	0.10	-1.0
1,329,489	-		GFF1301	0.11	-0.4
1,329,489	-		GFF1301	0.11	+0.6
1,329,525	-		GFF1301	0.13	+1.2
1,329,572	+		GFF1301	0.15	-1.3
1,329,572	+		GFF1301	0.15	-1.8
1,329,572	+		GFF1301	0.15	+0.8
1,329,577	+		GFF1301	0.16	-0.0
1,329,580	-		GFF1301	0.16	-0.4
1,329,580	-		GFF1301	0.16	+0.2
1,329,635	+		GFF1301	0.19	-0.4
1,329,652	-		GFF1301	0.20	-0.9
1,329,688	+		GFF1301	0.22	-0.6
1,329,696	-		GFF1301	0.22	+0.1
1,329,706	-		GFF1301	0.23	-0.2
1,329,717	-		GFF1301	0.23	+0.7
1,329,749	-		GFF1301	0.25	+0.9
1,329,797	+		GFF1301	0.27	+1.0
1,329,799	+		GFF1301	0.27	-0.4
1,329,833	+		GFF1301	0.29	+1.2
1,329,835	+		GFF1301	0.29	+0.5
1,329,835	+		GFF1301	0.29	-0.4
1,329,857	+		GFF1301	0.31	-0.5
1,329,876	+		GFF1301	0.32	-0.2
1,329,876	+		GFF1301	0.32	-0.5
1,329,884	-		GFF1301	0.32	+0.1
1,329,884	-		GFF1301	0.32	+0.0
1,329,884	-		GFF1301	0.32	-0.0
1,329,904	+		GFF1301	0.33	-0.1
1,329,904	+		GFF1301	0.33	+0.0
1,329,911	+		GFF1301	0.33	+0.1
1,329,912	-		GFF1301	0.33	+1.4
1,329,919	+		GFF1301	0.34	+0.4
1,329,927	-		GFF1301	0.34	-1.2
1,329,968	-		GFF1301	0.36	+0.2
1,329,977	+		GFF1301	0.37	-1.1
1,329,980	-		GFF1301	0.37	-0.4
1,329,998	-		GFF1301	0.38	-1.5
1,329,998	-		GFF1301	0.38	+0.2
1,330,025	-		GFF1301	0.39	-0.1
1,330,046	+		GFF1301	0.41	-1.1
1,330,046	+		GFF1301	0.41	+0.2
1,330,054	-		GFF1301	0.41	+0.2
1,330,054	-		GFF1301	0.41	+0.6
1,330,054	-		GFF1301	0.41	-0.9
1,330,059	-		GFF1301	0.41	+0.8
1,330,064	-		GFF1301	0.42	+0.6
1,330,099	+		GFF1301	0.43	+0.3
1,330,099	+		GFF1301	0.43	-0.7
1,330,099	+		GFF1301	0.43	+0.1
1,330,099	+		GFF1301	0.43	-0.6
1,330,099	+		GFF1301	0.43	+1.1
1,330,099	+		GFF1301	0.43	-0.4
1,330,099	+		GFF1301	0.43	-1.0
1,330,099	+		GFF1301	0.43	+0.1
1,330,099	+		GFF1301	0.43	+1.1
1,330,099	+		GFF1301	0.43	+1.4
1,330,099	+		GFF1301	0.43	+1.7
1,330,099	+		GFF1301	0.43	+0.8
1,330,099	+		GFF1301	0.43	-0.3
1,330,099	+		GFF1301	0.43	+1.0
1,330,099	+		GFF1301	0.43	+0.1
1,330,107	-		GFF1301	0.44	-0.8
1,330,107	-		GFF1301	0.44	+0.7
1,330,107	-		GFF1301	0.44	-0.4
1,330,107	-		GFF1301	0.44	+0.1
1,330,107	-		GFF1301	0.44	+1.6
1,330,107	-		GFF1301	0.44	-0.4
1,330,107	-		GFF1301	0.44	+0.4