Strain Fitness in Sphingobium sp. HT1-2 around GFF122

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
115,249	+		GFF121	0.32	+0.5
115,254	+		GFF121	0.33	+1.9
115,254	+		GFF121	0.33	-1.4
115,256	+		GFF121	0.33	-0.6
115,257	-		GFF121	0.33	-0.6
115,257	-		GFF121	0.33	-1.2
115,258	-		GFF121	0.33	+0.2
115,264	+		GFF121	0.33	-1.2
115,264	-		GFF121	0.33	+0.5
115,272	-		GFF121	0.34	-0.1
115,272	-		GFF121	0.34	+1.0
115,282	+		GFF121	0.35	-0.2
115,290	-		GFF121	0.35	-0.6
115,301	-		GFF121	0.36	-0.8
115,320	-		GFF121	0.38	-0.8
115,369	+		GFF121	0.41	-1.6
115,369	+		GFF121	0.41	-2.0
115,387	+		GFF121	0.43	-1.1
115,392	-		GFF121	0.43	+0.0
115,395	-		GFF121	0.43	-0.0
115,395	-		GFF121	0.43	-0.5
115,409	+		GFF121	0.44	-1.0
115,417	-		GFF121	0.45	-0.0
115,417	-		GFF121	0.45	-1.1
115,427	+		GFF121	0.46	+0.2
115,429	+		GFF121	0.46	+0.5
115,432	+		GFF121	0.46	-0.3
115,437	-		GFF121	0.46	-0.9
115,505	+		GFF121	0.51	+0.5
115,529	+		GFF121	0.53	+1.7
115,558	-		GFF121	0.55	-1.8
115,587	-		GFF121	0.57	-0.7
115,589	+		GFF121	0.58	+0.5
115,597	-		GFF121	0.58	+0.3
115,621	+		GFF121	0.60	+0.5
115,621	+		GFF121	0.60	-0.3
115,626	+		GFF121	0.60	-0.1
115,626	+		GFF121	0.60	-0.4
115,629	-		GFF121	0.61	+0.2
115,629	-		GFF121	0.61	-0.9
115,631	+		GFF121	0.61	-0.5
115,634	-		GFF121	0.61	+0.8
115,661	-		GFF121	0.63	+0.8
115,706	+		GFF121	0.66	+0.6
115,714	-		GFF121	0.67	-0.2
115,714	-		GFF121	0.67	-1.2
115,714	-		GFF121	0.67	-1.3
115,721	-		GFF121	0.67	-0.7
115,727	-		GFF121	0.68	+0.7
115,767	+		GFF121	0.71	+0.5
115,767	+		GFF121	0.71	+0.6
115,767	+		GFF121	0.71	-0.4
115,767	+		GFF121	0.71	-1.3
115,767	+		GFF121	0.71	-1.4
115,767	+		GFF121	0.71	+0.9
115,767	+		GFF121	0.71	-1.4
115,775	-		GFF121	0.71	-1.1
115,775	-		GFF121	0.71	+1.0
115,803	-		GFF121	0.73	-1.2
115,810	+		GFF121	0.74	+0.5
115,810	+		GFF121	0.74	-0.9
115,810	-		GFF121	0.74	+0.0
115,812	+		GFF121	0.74	-0.1
115,812	+		GFF121	0.74	-0.6
115,817	+		GFF121	0.75	-0.1
115,820	-		GFF121	0.75	+1.1
115,823	-		GFF121	0.75	+0.6
115,864	+		GFF121	0.78	-1.2
115,872	-		GFF121	0.79	+0.9
115,872	-		GFF121	0.79	-1.1
115,872	-		GFF121	0.79	-1.5
115,872	-		GFF121	0.79	-2.3
115,877	-		GFF121	0.79	+0.5
115,906	-		GFF121	0.81	+0.3
115,908	+		GFF121	0.81	-1.5
115,908	+		GFF121	0.81	-0.3
115,913	+		GFF121	0.82	+0.5
115,913	+		GFF121	0.82	+0.6
115,913	+		GFF121	0.82	+1.4
115,913	+		GFF121	0.82	-0.4
115,914	+		GFF121	0.82	+1.1
115,914	+		GFF121	0.82	-0.1
115,914	+		GFF121	0.82	+0.5
115,916	-		GFF121	0.82	+0.5
115,921	-		GFF121	0.82	+0.1
115,921	-		GFF121	0.82	+1.4
115,921	-		GFF121	0.82	-0.4
115,936	-		GFF121	0.83	+1.3
115,976	+		GFF121	0.86	+0.4
115,984	-		GFF121	0.87	-1.1
115,984	-		GFF121	0.87	-0.3
116,019	-		GFF121	0.90	-0.1
116,024	-		GFF121	0.90	-1.9
116,032	+				+0.5
116,032	+				+0.5
116,097	+				+1.3
116,128	-				+0.7
116,131	-				+1.4
116,147	-				-0.4
116,177	-				-1.9
116,185	-				+1.0
116,185	-				-0.4
116,198	-				+0.2
116,202	+				+1.0
116,208	-				+0.2
116,208	-				+0.0
116,208	-				-0.1
116,210	-				-0.5
116,222	+				-0.0
116,283	+				-0.5
116,283	+				+0.2
116,283	+				+1.0
116,283	-				+0.6
116,291	-				-0.8
116,304	-				+0.6
116,308	-				-1.9
116,354	+		GFF122	0.15	-0.0
116,398	+		GFF122	0.21	-1.6
116,429	-		GFF122	0.25	-1.2
116,449	-		GFF122	0.28	+1.5
116,458	+		GFF122	0.29	-0.9
116,466	-		GFF122	0.30	+0.1
116,499	-		GFF122	0.35	-0.8
116,507	+		GFF122	0.36	+0.3
116,507	+		GFF122	0.36	-1.6
116,507	-		GFF122	0.36	+1.3
116,513	+		GFF122	0.37	+0.9
116,515	-		GFF122	0.37	+0.2
116,515	-		GFF122	0.37	-0.3
116,515	-		GFF122	0.37	+0.3
116,515	-		GFF122	0.37	-0.1
116,553	-		GFF122	0.42	+1.0
116,556	+		GFF122	0.43	-0.5
116,564	-		GFF122	0.44	-1.9
116,564	-		GFF122	0.44	-0.3
116,564	-		GFF122	0.44	+0.4
116,564	-		GFF122	0.44	-0.1
116,570	+		GFF122	0.44	+1.6
116,648	-		GFF122	0.55	-1.8
116,672	-		GFF122	0.58	-0.6
116,674	+		GFF122	0.59	+0.4
116,674	+		GFF122	0.59	+1.2
116,674	+		GFF122	0.59	-0.8
116,674	+		GFF122	0.59	-0.1
116,674	+		GFF122	0.59	-0.0
116,674	+		GFF122	0.59	-1.5
116,674	+		GFF122	0.59	+0.4
116,674	+		GFF122	0.59	+0.3
116,674	+		GFF122	0.59	+0.1
116,674	+		GFF122	0.59	-1.6
116,674	+		GFF122	0.59	+0.3
116,682	-		GFF122	0.60	+1.6
116,682	-		GFF122	0.60	-1.5
116,684	+		GFF122	0.60	-1.2
116,684	+		GFF122	0.60	+0.5
116,684	+		GFF122	0.60	-0.4
116,692	-		GFF122	0.61	-1.6
116,692	-		GFF122	0.61	-1.0
116,731	-		GFF122	0.66	-0.9
116,736	-		GFF122	0.67	-1.0
116,748	+		GFF122	0.69	-0.8
116,748	+		GFF122	0.69	+0.1
116,753	+		GFF122	0.69	+0.3
116,756	+		GFF122	0.70	+0.1
116,756	-		GFF122	0.70	-0.1
116,756	-		GFF122	0.70	-0.5
116,771	+		GFF122	0.72	-0.7
116,771	+		GFF122	0.72	-0.6
116,771	+		GFF122	0.72	-0.5
116,771	+		GFF122	0.72	+1.0
116,771	+		GFF122	0.72	-1.6
116,771	+		GFF122	0.72	+0.3
116,771	+		GFF122	0.72	+1.5
116,771	+		GFF122	0.72	-0.5
116,771	+		GFF122	0.72	-0.5
116,771	+		GFF122	0.72	-0.4
116,779	-		GFF122	0.73	-0.5
116,779	-		GFF122	0.73	-0.9
116,779	-		GFF122	0.73	-0.7
116,779	-		GFF122	0.73	+1.5
116,779	-		GFF122	0.73	+0.3
116,779	-		GFF122	0.73	-1.5
116,779	-		GFF122	0.73	+1.2
116,788	-		GFF122	0.74	-2.2
116,814	+		GFF122	0.78	+0.3
116,814	+		GFF122	0.78	-0.4
116,814	+		GFF122	0.78	+0.8
116,822	-		GFF122	0.79	-1.0
116,822	-		GFF122	0.79	+0.6
116,822	-		GFF122	0.79	-1.5
116,838	-		GFF122	0.81	+0.5
116,839	+		GFF122	0.81	-0.3
116,841	+		GFF122	0.81	-0.9
116,851	+		GFF122	0.83	-0.2
116,851	+		GFF122	0.83	+0.5
116,852	+		GFF122	0.83	+0.4
116,852	+		GFF122	0.83	-0.4
116,907	-				-0.7
116,922	-				-0.9
116,930	-				+0.5
116,932	+				+0.4
116,944	+				-0.9
116,949	+				+0.1
116,952	-				-0.5
116,985	+				-0.8
116,987	+				+1.5
117,033	+				-1.6
117,033	+				-0.9
117,041	-				-2.4
117,041	-				+0.1
117,042	-				-0.7
117,051	+				-2.1
117,093	+				-0.8
117,093	+				-0.4
117,093	+				+1.3
117,095	-				-1.1
117,096	-				+1.2
117,096	-				-0.2
117,101	+				-0.3
117,101	+				+0.5
117,101	-				-0.6
117,101	-				+0.2
117,101	-				+0.1
117,101	-				-0.4
117,112	+				-0.7
117,112	+				-2.2
117,112	+				-0.9
117,112	+				+0.5
117,112	+				+0.5
117,120	-				-0.3
117,120	-				-1.5
117,137	-				+0.9
117,143	+				-0.3
117,144	-				-0.0
117,144	-				-0.2
117,148	+				-0.3
117,154	+				-2.2
117,162	-				-0.7
117,162	-				+0.2
117,170	+				+0.5
117,170	+				+0.5
117,184	-				-1.3
117,251	+		GFF123	0.13	-0.3
117,251	+		GFF123	0.13	-1.5
117,259	-		GFF123	0.15	-0.1
117,259	-		GFF123	0.15	-1.8
117,281	-		GFF123	0.17	+0.3
117,288	+		GFF123	0.18	-1.0
117,306	-		GFF123	0.20	-1.3
117,325	-		GFF123	0.23	-2.3
117,342	+		GFF123	0.25	+1.0
117,355	+		GFF123	0.27	-2.8
117,360	+		GFF123	0.27	-0.1
117,360	-		GFF123	0.27	-0.4
117,388	+		GFF123	0.31	-1.3
117,391	-		GFF123	0.31	-1.8
117,393	+		GFF123	0.32	-1.2
117,396	-		GFF123	0.32	-0.8
117,396	-		GFF123	0.32	+0.1
117,411	+		GFF123	0.34	-1.2
117,411	+		GFF123	0.34	-0.5
117,411	+		GFF123	0.34	-1.4
117,411	+		GFF123	0.34	+0.1
117,411	+		GFF123	0.34	+0.5
117,411	+		GFF123	0.34	+0.5
117,419	-		GFF123	0.35	+0.2
117,419	-		GFF123	0.35	-0.4
117,419	-		GFF123	0.35	-0.0
117,419	-		GFF123	0.35	-1.7
117,419	-		GFF123	0.35	+0.6
117,429	-		GFF123	0.36	+1.1
117,429	-		GFF123	0.36	-0.7
117,469	+		GFF123	0.41	+0.5
117,505	-		GFF123	0.46	-0.2
117,532	+		GFF123	0.49	-2.4
117,576	-		GFF123	0.55	+0.7
117,585	-		GFF123	0.56	-0.4
117,598	-		GFF123	0.58	-0.6
117,598	-		GFF123	0.58	+1.1
117,615	+		GFF123	0.60	-0.9
117,615	+		GFF123	0.60	+0.1
117,615	+		GFF123	0.60	-0.1
117,615	+		GFF123	0.60	+0.5
117,623	-		GFF123	0.61	-2.3
117,623	-		GFF123	0.61	+0.2
117,623	-		GFF123	0.61	-1.4
117,623	-		GFF123	0.61	-0.5
117,623	-		GFF123	0.61	-0.2
117,623	-		GFF123	0.61	-1.1
117,623	-		GFF123	0.61	-0.5
117,623	-		GFF123	0.61	-1.3
117,623	-		GFF123	0.61	-0.6
117,632	+		GFF123	0.62	+0.6
117,640	-		GFF123	0.63	+0.2
117,652	-		GFF123	0.65	-2.3
117,664	-		GFF123	0.66	-1.2
117,682	-		GFF123	0.68	-2.2
117,684	+		GFF123	0.69	-0.0
117,689	-		GFF123	0.69	+0.1
117,745	+		GFF123	0.76	+1.0
117,745	+		GFF123	0.76	-0.2
117,745	+		GFF123	0.76	-0.1
117,745	+		GFF123	0.76	-2.0
117,750	+		GFF123	0.77	-1.1
117,750	+		GFF123	0.77	-0.6
117,750	+		GFF123	0.77	+0.0
117,750	+		GFF123	0.77	-1.3
117,753	-		GFF123	0.77	-1.3
117,753	-		GFF123	0.77	-0.4
117,753	-		GFF123	0.77	-1.4
117,753	-		GFF123	0.77	-1.4
117,753	-		GFF123	0.77	-2.9
117,758	-		GFF123	0.78	-1.8
117,758	-		GFF123	0.78	-2.1
117,758	-		GFF123	0.78	-1.7
117,758	-		GFF123	0.78	-1.0
117,763	-		GFF123	0.79	+1.1
117,764	+		GFF123	0.79	+0.2
117,764	+		GFF123	0.79	+0.8
117,772	-		GFF123	0.80	-0.9
117,772	-		GFF123	0.80	-2.8
117,772	-		GFF123	0.80	-0.3
117,809	-		GFF123	0.84	-1.4
117,810	+		GFF123	0.85	-0.5
117,810	+		GFF123	0.85	-1.5
117,810	+		GFF123	0.85	+1.2
117,821	+		GFF123	0.86	+0.2
117,821	+		GFF123	0.86	+0.9
117,823	+		GFF123	0.86	-0.1
117,831	+		GFF123	0.87	-2.5
117,838	+		GFF123	0.88	-1.4
117,839	-		GFF123	0.88	-0.4
117,848	+		GFF123	0.89	-0.2
117,905	+				-0.5
117,908	-				-0.4
117,908	-				-0.9
117,908	-				-1.1