Strain Fitness in Sphingobium sp. HT1-2 around GFF1196

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,208,069	+				+0.3
1,208,081	+				+0.5
1,208,086	+				-0.3
1,208,086	+				-0.3
1,208,086	+				+0.8
1,208,089	-				-0.2
1,208,089	-				+0.5
1,208,094	-				-0.8
1,208,104	+				-0.2
1,208,122	-				-0.5
1,208,124	-				-1.2
1,208,143	-				-0.3
1,208,189	+		GFF1195	0.13	+0.3
1,208,189	+		GFF1195	0.13	-1.2
1,208,218	+		GFF1195	0.15	+0.5
1,208,225	-		GFF1195	0.16	-0.8
1,208,249	+		GFF1195	0.19	+0.0
1,208,249	+		GFF1195	0.19	-0.1
1,208,257	-		GFF1195	0.19	+0.5
1,208,257	-		GFF1195	0.19	-1.1
1,208,286	-		GFF1195	0.22	-0.4
1,208,317	-		GFF1195	0.25	+0.1
1,208,333	+		GFF1195	0.27	+0.9
1,208,333	+		GFF1195	0.27	-0.1
1,208,333	+		GFF1195	0.27	-0.5
1,208,341	-		GFF1195	0.28	-0.4
1,208,341	-		GFF1195	0.28	-0.3
1,208,369	+		GFF1195	0.30	-0.2
1,208,369	+		GFF1195	0.30	-0.2
1,208,369	+		GFF1195	0.30	+0.2
1,208,369	+		GFF1195	0.30	-0.3
1,208,369	+		GFF1195	0.30	-0.3
1,208,369	+		GFF1195	0.30	+0.6
1,208,377	-		GFF1195	0.31	+0.5
1,208,377	-		GFF1195	0.31	+0.3
1,208,377	-		GFF1195	0.31	+0.5
1,208,377	-		GFF1195	0.31	-0.5
1,208,377	-		GFF1195	0.31	-1.2
1,208,377	-		GFF1195	0.31	-0.1
1,208,377	-		GFF1195	0.31	+1.7
1,208,377	-		GFF1195	0.31	-1.1
1,208,377	-		GFF1195	0.31	-2.4
1,208,377	-		GFF1195	0.31	+0.7
1,208,377	-		GFF1195	0.31	-0.6
1,208,384	+		GFF1195	0.32	+1.1
1,208,384	+		GFF1195	0.32	-0.8
1,208,391	+		GFF1195	0.33	-1.8
1,208,391	+		GFF1195	0.33	+0.5
1,208,391	+		GFF1195	0.33	-0.7
1,208,391	+		GFF1195	0.33	-0.8
1,208,391	+		GFF1195	0.33	-0.3
1,208,391	+		GFF1195	0.33	+0.3
1,208,391	+		GFF1195	0.33	-0.1
1,208,391	+		GFF1195	0.33	-0.7
1,208,391	+		GFF1195	0.33	+0.5
1,208,391	+		GFF1195	0.33	-1.5
1,208,391	+		GFF1195	0.33	-0.3
1,208,391	+		GFF1195	0.33	+0.9
1,208,392	-		GFF1195	0.33	+0.3
1,208,392	-		GFF1195	0.33	-1.2
1,208,397	+		GFF1195	0.33	+0.1
1,208,399	-		GFF1195	0.33	-0.8
1,208,399	-		GFF1195	0.33	+1.1
1,208,399	-		GFF1195	0.33	+0.0
1,208,399	-		GFF1195	0.33	+0.1
1,208,399	-		GFF1195	0.33	-0.6
1,208,399	-		GFF1195	0.33	-0.5
1,208,399	-		GFF1195	0.33	-0.4
1,208,399	-		GFF1195	0.33	+0.2
1,208,399	-		GFF1195	0.33	-0.8
1,208,399	-		GFF1195	0.33	-0.3
1,208,399	-		GFF1195	0.33	+0.3
1,208,399	-		GFF1195	0.33	+0.2
1,208,399	-		GFF1195	0.33	+0.4
1,208,406	+		GFF1195	0.34	+0.4
1,208,414	-		GFF1195	0.35	+1.0
1,208,414	-		GFF1195	0.35	-0.5
1,208,414	-		GFF1195	0.35	-2.8
1,208,439	+		GFF1195	0.37	-1.7
1,208,439	+		GFF1195	0.37	+0.5
1,208,478	+		GFF1195	0.41	-0.7
1,208,486	-		GFF1195	0.42	-2.2
1,208,503	-		GFF1195	0.44	-0.9
1,208,503	-		GFF1195	0.44	-0.4
1,208,519	-		GFF1195	0.45	-1.5
1,208,566	-		GFF1195	0.50	-0.3
1,208,568	+		GFF1195	0.50	+1.5
1,208,568	+		GFF1195	0.50	+0.2
1,208,568	+		GFF1195	0.50	+0.4
1,208,568	+		GFF1195	0.50	-0.8
1,208,568	+		GFF1195	0.50	-2.6
1,208,568	-		GFF1195	0.50	+0.3
1,208,576	-		GFF1195	0.51	+0.6
1,208,578	+		GFF1195	0.51	+0.6
1,208,581	-		GFF1195	0.51	-0.8
1,208,581	-		GFF1195	0.51	-0.6
1,208,583	+		GFF1195	0.52	-0.2
1,208,583	+		GFF1195	0.52	+0.5
1,208,583	+		GFF1195	0.52	-1.5
1,208,586	-		GFF1195	0.52	+0.6
1,208,590	+		GFF1195	0.52	-2.1
1,208,591	-		GFF1195	0.52	-0.8
1,208,611	+		GFF1195	0.54	+0.0
1,208,629	+		GFF1195	0.56	+0.6
1,208,629	+		GFF1195	0.56	-0.0
1,208,629	+		GFF1195	0.56	-0.9
1,208,629	+		GFF1195	0.56	-0.8
1,208,637	-		GFF1195	0.57	-0.6
1,208,637	-		GFF1195	0.57	+1.0
1,208,701	+		GFF1195	0.63	-1.5
1,208,709	-		GFF1195	0.64	+0.5
1,208,724	+		GFF1195	0.66	-1.3
1,208,742	+		GFF1195	0.67	+0.3
1,208,742	+		GFF1195	0.67	-0.4
1,208,743	+		GFF1195	0.68	-0.3
1,208,751	-		GFF1195	0.68	+0.1
1,208,805	-		GFF1195	0.74	-1.1
1,208,805	-		GFF1195	0.74	-1.9
1,208,845	+		GFF1195	0.78	+0.7
1,208,847	+		GFF1195	0.78	+0.0
1,208,847	-		GFF1195	0.78	+0.5
1,208,847	-		GFF1195	0.78	-1.2
1,208,855	-		GFF1195	0.79	-1.7
1,208,883	-		GFF1195	0.81	-1.4
1,208,886	+		GFF1195	0.82	-0.5
1,208,886	+		GFF1195	0.82	-0.4
1,208,886	+		GFF1195	0.82	-0.5
1,208,886	+		GFF1195	0.82	-0.4
1,208,886	+		GFF1195	0.82	+0.1
1,208,894	-		GFF1195	0.83	-1.6
1,208,901	+		GFF1195	0.83	-0.2
1,208,901	+		GFF1195	0.83	-0.7
1,208,909	-		GFF1195	0.84	-1.4
1,208,909	-		GFF1195	0.84	+0.9
1,208,909	-		GFF1195	0.84	+0.2
1,208,913	+		GFF1195	0.84	-0.4
1,208,916	-		GFF1195	0.85	-0.1
1,208,917	+		GFF1195	0.85	-0.3
1,208,917	+		GFF1195	0.85	+1.3
1,208,925	-		GFF1195	0.86	-0.3
1,208,947	+		GFF1195	0.88	+0.7
1,208,956	+		GFF1195	0.89	-2.1
1,208,964	-		GFF1195	0.89	-0.2
1,208,975	+				+0.0
1,208,975	+				-1.7
1,208,975	+				-0.1
1,208,983	-				-0.4
1,208,983	-				-2.3
1,208,983	-				-1.3
1,208,983	-				-2.1
1,208,983	-				+0.4
1,208,983	-				+0.2
1,208,988	-				-3.1
1,209,014	+				-0.8
1,209,022	-				-1.5
1,209,024	+				+0.7
1,209,032	-				-0.4
1,209,032	-				-0.7
1,209,038	+				+0.5
1,209,038	+				-0.1
1,209,043	+				-0.2
1,209,046	-				+0.9
1,209,058	-				-1.7
1,209,058	-				+1.2
1,209,067	+				-1.0
1,209,067	+				+0.8
1,209,067	+				-0.8
1,209,075	-				-0.3
1,209,075	-				-1.5
1,209,075	-				-0.6
1,209,075	-				-2.4
1,209,075	-				+1.1
1,209,075	-				-1.2
1,209,077	+				-0.6
1,209,077	+				-1.7
1,209,085	-				-1.1
1,209,087	+				+0.9
1,209,087	+				+0.7
1,209,087	+				-0.3
1,209,095	-				+0.6
1,209,100	-				+0.2
1,209,100	-				+0.1
1,209,100	-				+0.1
1,209,105	+				-0.8
1,209,105	+				-1.5
1,209,105	+				+0.3
1,209,105	+				-0.8
1,209,105	+				-0.3
1,209,105	+				+0.4
1,209,105	+				+1.2
1,209,105	-				-0.1
1,209,107	+				-0.3
1,209,107	+				-0.6
1,209,113	-				-1.5
1,209,113	-				-1.3
1,209,113	-				-0.1
1,209,113	-				-1.4
1,209,113	-				-0.5
1,209,113	-				-2.4
1,209,113	-				+0.3
1,209,115	-				-0.2
1,209,115	-				+0.5
1,209,115	-				-2.3
1,209,117	+				+0.3
1,209,125	+				-0.6
1,209,133	-				-0.7
1,209,133	-				-1.1
1,209,135	+				-1.6
1,209,135	+				-0.9
1,209,140	+				-0.1
1,209,143	-				+0.1
1,209,143	-				-0.1
1,209,143	-				-0.3
1,209,178	+		GFF1196	0.12	-0.6
1,209,181	-		GFF1196	0.12	-2.2
1,209,196	+		GFF1196	0.14	-1.8
1,209,206	+		GFF1196	0.15	-0.6
1,209,219	+		GFF1196	0.16	-0.0
1,209,222	-		GFF1196	0.17	-1.0
1,209,222	-		GFF1196	0.17	+0.2
1,209,224	+		GFF1196	0.17	-1.2
1,209,241	+		GFF1196	0.19	-1.2
1,209,243	+		GFF1196	0.19	+0.2
1,209,243	-		GFF1196	0.19	-2.1
1,209,249	-		GFF1196	0.20	-0.2
1,209,251	-		GFF1196	0.20	+0.1
1,209,251	-		GFF1196	0.20	-1.1
1,209,262	-		GFF1196	0.21	+0.4
1,209,262	-		GFF1196	0.21	+0.1
1,209,262	-		GFF1196	0.21	+1.1
1,209,262	-		GFF1196	0.21	+0.9
1,209,303	-		GFF1196	0.26	-1.3
1,209,340	+		GFF1196	0.30	-1.3
1,209,348	-		GFF1196	0.30	-0.5
1,209,348	-		GFF1196	0.30	+1.2
1,209,348	-		GFF1196	0.30	-0.6
1,209,378	+		GFF1196	0.34	-2.2
1,209,378	+		GFF1196	0.34	-1.2
1,209,384	+		GFF1196	0.34	-0.4
1,209,402	+		GFF1196	0.36	+0.0
1,209,410	-		GFF1196	0.37	+0.2
1,209,419	+		GFF1196	0.38	-0.9
1,209,419	+		GFF1196	0.38	-2.2
1,209,419	+		GFF1196	0.38	-0.1
1,209,419	+		GFF1196	0.38	+0.3
1,209,419	+		GFF1196	0.38	-1.1
1,209,419	+		GFF1196	0.38	-0.4
1,209,439	-		GFF1196	0.40	+0.5
1,209,444	+		GFF1196	0.41	-2.1
1,209,444	+		GFF1196	0.41	+0.0
1,209,447	-		GFF1196	0.41	+0.3
1,209,447	-		GFF1196	0.41	-0.6
1,209,447	-		GFF1196	0.41	+0.8
1,209,452	-		GFF1196	0.42	-0.1
1,209,457	-		GFF1196	0.42	+0.5
1,209,457	-		GFF1196	0.42	-0.9
1,209,457	-		GFF1196	0.42	-0.3
1,209,467	+		GFF1196	0.43	+0.4
1,209,467	+		GFF1196	0.43	+0.2
1,209,480	+		GFF1196	0.45	+0.3
1,209,486	-		GFF1196	0.46	-1.0
1,209,496	+		GFF1196	0.47	-0.3
1,209,496	-		GFF1196	0.47	-0.2
1,209,513	-		GFF1196	0.49	+0.2
1,209,524	-		GFF1196	0.50	-0.4
1,209,562	+		GFF1196	0.54	-0.7
1,209,570	-		GFF1196	0.55	+0.4
1,209,572	-		GFF1196	0.55	-0.2
1,209,586	+		GFF1196	0.57	+0.3
1,209,586	+		GFF1196	0.57	-1.9
1,209,600	-		GFF1196	0.58	-1.1
1,209,624	-		GFF1196	0.61	-0.4
1,209,624	-		GFF1196	0.61	-0.6
1,209,640	+		GFF1196	0.62	-1.3
1,209,640	+		GFF1196	0.62	-2.5
1,209,640	+		GFF1196	0.62	+0.2
1,209,648	-		GFF1196	0.63	+0.1
1,209,648	-		GFF1196	0.63	+1.3
1,209,662	+		GFF1196	0.65	-0.1
1,209,670	-		GFF1196	0.66	-0.2
1,209,670	-		GFF1196	0.66	-1.7
1,209,670	-		GFF1196	0.66	-0.5
1,209,671	+		GFF1196	0.66	-1.4
1,209,698	+		GFF1196	0.69	-0.4
1,209,698	+		GFF1196	0.69	-1.8
1,209,703	-		GFF1196	0.69	+1.1
1,209,705	+		GFF1196	0.70	+0.4
1,209,706	-		GFF1196	0.70	+0.0
1,209,713	-		GFF1196	0.70	-0.8
1,209,741	+		GFF1196	0.73	-1.6
1,209,762	+		GFF1196	0.76	-0.4
1,209,783	+		GFF1196	0.78	-0.4
1,209,790	+		GFF1196	0.79	+0.5
1,209,791	-		GFF1196	0.79	-0.5
1,209,817	+		GFF1196	0.82	-0.8
1,209,817	-		GFF1196	0.82	-0.9
1,209,819	+		GFF1196	0.82	+0.1
1,209,822	+		GFF1196	0.82	-1.3
1,209,825	-		GFF1196	0.83	-0.3
1,209,827	+		GFF1196	0.83	-1.6
1,209,827	-		GFF1196	0.83	-0.3
1,209,842	-		GFF1196	0.84	-0.2
1,209,865	+		GFF1196	0.87	+1.2
1,209,865	+		GFF1196	0.87	+0.2
1,209,865	+		GFF1196	0.87	-1.5
1,209,865	+		GFF1196	0.87	+0.3
1,209,873	-		GFF1196	0.88	-0.6
1,209,873	-		GFF1196	0.88	-0.2
1,209,873	-		GFF1196	0.88	-1.4
1,209,873	-		GFF1196	0.88	+0.5
1,209,873	-		GFF1196	0.88	-0.3
1,209,873	-		GFF1196	0.88	+1.1
1,209,873	-		GFF1196	0.88	-2.3
1,209,879	+		GFF1196	0.89	-0.3
1,209,879	+		GFF1196	0.89	-1.5
1,209,879	+		GFF1196	0.89	-0.3
1,209,879	+		GFF1196	0.89	-0.7
1,209,879	+		GFF1196	0.89	-0.7
1,209,887	-		GFF1196	0.89	+0.9
1,209,887	-		GFF1196	0.89	+0.3
1,209,887	-		GFF1196	0.89	-0.1
1,209,887	-		GFF1196	0.89	+0.6
1,209,887	-		GFF1196	0.89	+0.2
1,209,887	-		GFF1196	0.89	+0.2
1,209,887	-		GFF1196	0.89	-1.1
1,209,889	+		GFF1196	0.90	+0.1
1,209,897	-				-0.6
1,209,901	-				+0.1
1,209,911	+				+0.2
1,209,912	+				-1.1
1,209,925	-				-0.6
1,209,930	-				-0.1
1,209,930	-				-0.7
1,209,940	-				-1.5
1,209,944	-				-0.0
1,209,946	+				-1.3
1,209,946	+				-0.9
1,209,946	+				-1.7
1,209,946	+				+0.1
1,209,946	+				+0.1
1,209,946	+				-0.4
1,209,947	+				-0.4
1,209,955	-				-2.0
1,209,955	-				-0.9
1,209,955	-				-2.3
1,209,955	-				-1.1
1,209,955	-				+0.4
1,209,955	-				-0.9
1,209,955	-				-1.4
1,209,966	-				-1.1
1,209,990	-				-0.8
1,209,993	+				-2.4
1,209,997	-				+0.2
1,210,050	+				-0.1
1,210,064	-				+0.4
1,210,064	-				-0.1
1,210,092	+				-2.3
1,210,092	+				-1.1
1,210,097	+				-2.1
1,210,097	+				+0.7
1,210,105	-				+1.0
1,210,105	-				+0.3
1,210,105	-				+1.0
1,210,116	-				+0.2
1,210,168	+				+0.0
1,210,173	+				-0.3
1,210,173	+				-1.5
1,210,181	-		GFF1197	0.10	-1.3
1,210,181	-		GFF1197	0.10	-1.5
1,210,181	-		GFF1197	0.10	-1.4
1,210,181	-		GFF1197	0.10	-0.7
1,210,183	+		GFF1197	0.10	-0.3
1,210,183	+		GFF1197	0.10	-0.1
1,210,191	-		GFF1197	0.11	-1.0
1,210,191	-		GFF1197	0.11	+0.0
1,210,191	-		GFF1197	0.11	-0.7
1,210,191	-		GFF1197	0.11	-1.1
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1,210,567	+		GFF1197	0.41	-2.1
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1,210,567	+		GFF1197	0.41	-1.8
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1,210,970	-		GFF1197	0.73	-1.6
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