Strain Fitness in Sphingobium sp. HT1-2 around GFF1160

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,166,742	-				+0.9
1,166,799	+				-1.1
1,166,799	+				+0.3
1,166,799	+				-0.5
1,166,799	+				-0.3
1,166,803	+				-0.4
1,166,807	-				-1.1
1,166,807	-				-1.5
1,166,807	-				-0.7
1,166,807	-				-0.9
1,166,807	-				-0.5
1,166,809	+				-1.0
1,166,809	+				-0.2
1,166,809	+				-0.4
1,166,815	+				-0.1
1,166,815	+				+1.2
1,166,815	+				+0.4
1,166,815	+				-2.5
1,166,815	+				-1.3
1,166,815	+				+0.7
1,166,815	+				+0.3
1,166,815	+				-1.4
1,166,815	+				-1.7
1,166,815	+				-1.7
1,166,815	+				-1.0
1,166,815	+				-0.1
1,166,815	+				+0.2
1,166,815	+				+0.8
1,166,815	+				+0.9
1,166,815	+				-0.4
1,166,815	+				-0.8
1,166,815	+				-0.2
1,166,815	+				+0.9
1,166,815	+				+1.5
1,166,815	+				-0.8
1,166,815	+				-0.7
1,166,815	+				-2.1
1,166,815	+				-0.4
1,166,815	+				-0.3
1,166,815	+				-1.7
1,166,815	+				+0.0
1,166,815	+				-0.5
1,166,817	-				-2.1
1,166,817	-				-0.3
1,166,817	-				+1.0
1,166,823	-				+0.4
1,166,823	-				-2.0
1,166,823	-				-1.3
1,166,823	-				-0.6
1,166,823	-				-3.0
1,166,823	-				-0.1
1,166,823	-				+0.0
1,166,823	-				-1.6
1,166,823	-				+1.6
1,166,823	-				+0.6
1,166,823	-				+0.5
1,166,823	-				-1.1
1,166,823	-				+0.7
1,166,823	-				-0.8
1,166,823	-				-0.4
1,166,823	-				-1.2
1,166,823	-				-0.6
1,166,823	-				-0.5
1,166,823	-				-1.3
1,166,823	-				+0.8
1,166,823	-				+0.7
1,166,823	-				-2.2
1,166,823	-				-0.5
1,166,855	+				+0.1
1,166,860	+				-1.4
1,166,863	-				-0.3
1,166,869	-				+0.4
1,166,872	+				-1.1
1,166,875	+				-1.0
1,166,881	-				+0.1
1,166,883	-				+0.5
1,166,885	+				+0.2
1,166,886	+				-0.1
1,166,886	+				-1.5
1,166,890	+				-0.2
1,166,890	+				-1.3
1,166,890	+				-0.3
1,166,890	+				-1.1
1,166,890	+				-0.9
1,166,890	+				+0.1
1,166,890	+				-1.2
1,166,890	+				+0.7
1,166,890	+				-1.3
1,166,890	+				+0.3
1,166,890	+				+0.2
1,166,890	+				+0.5
1,166,893	-				-0.3
1,166,896	-				-1.4
1,166,898	-				+0.0
1,166,898	-				+0.5
1,166,898	-				+0.0
1,166,898	-				-1.6
1,166,898	-				-1.0
1,166,898	-				-0.7
1,166,898	-				-1.4
1,166,898	-				-0.3
1,166,898	-				+0.9
1,166,898	-				-0.9
1,166,900	+				+0.0
1,166,903	-				+1.1
1,166,908	-				+0.4
1,166,913	-				-3.0
1,166,933	+				-0.9
1,166,934	+				-1.8
1,166,938	+				+0.3
1,166,949	-				+0.3
1,166,956	+				+1.0
1,166,959	-				-1.8
1,166,964	-		GFF1160	0.10	-1.2
1,166,969	+		GFF1160	0.10	-0.1
1,166,971	+		GFF1160	0.11	-0.3
1,166,977	-		GFF1160	0.11	+0.5
1,166,977	-		GFF1160	0.11	-0.3
1,166,984	+		GFF1160	0.12	+0.3
1,166,984	-		GFF1160	0.12	-0.2
1,167,008	-		GFF1160	0.13	+0.3
1,167,019	+		GFF1160	0.14	-1.4
1,167,039	+		GFF1160	0.16	-1.8
1,167,045	+		GFF1160	0.16	-0.3
1,167,046	+		GFF1160	0.16	-0.7
1,167,046	+		GFF1160	0.16	-1.2
1,167,046	+		GFF1160	0.16	-1.8
1,167,046	+		GFF1160	0.16	-0.3
1,167,046	+		GFF1160	0.16	-0.4
1,167,046	+		GFF1160	0.16	+0.3
1,167,046	+		GFF1160	0.16	-1.3
1,167,046	+		GFF1160	0.16	+0.1
1,167,046	+		GFF1160	0.16	+0.5
1,167,046	+		GFF1160	0.16	+0.3
1,167,046	+		GFF1160	0.16	-1.1
1,167,047	-		GFF1160	0.16	-0.4
1,167,053	+		GFF1160	0.17	+0.1
1,167,053	+		GFF1160	0.17	-0.2
1,167,053	+		GFF1160	0.17	+1.3
1,167,053	+		GFF1160	0.17	-0.3
1,167,053	+		GFF1160	0.17	-0.7
1,167,053	+		GFF1160	0.17	-1.1
1,167,053	+		GFF1160	0.17	+0.5
1,167,054	-		GFF1160	0.17	-0.3
1,167,054	-		GFF1160	0.17	-0.5
1,167,054	-		GFF1160	0.17	+0.2
1,167,054	-		GFF1160	0.17	-0.8
1,167,054	-		GFF1160	0.17	-1.5
1,167,054	-		GFF1160	0.17	-1.5
1,167,054	-		GFF1160	0.17	-1.6
1,167,054	-		GFF1160	0.17	+0.7
1,167,054	-		GFF1160	0.17	+0.3
1,167,054	-		GFF1160	0.17	+0.9
1,167,059	+		GFF1160	0.17	+1.0
1,167,059	+		GFF1160	0.17	+0.4
1,167,059	+		GFF1160	0.17	-1.0
1,167,061	-		GFF1160	0.17	-0.8
1,167,061	-		GFF1160	0.17	+0.5
1,167,067	-		GFF1160	0.18	+0.3
1,167,070	+		GFF1160	0.18	+0.6
1,167,070	+		GFF1160	0.18	-1.3
1,167,084	-		GFF1160	0.19	-0.9
1,167,084	-		GFF1160	0.19	-1.1
1,167,084	-		GFF1160	0.19	+0.1
1,167,091	-		GFF1160	0.19	-1.7
1,167,154	+		GFF1160	0.24	-1.2
1,167,164	+		GFF1160	0.25	-0.6
1,167,169	+		GFF1160	0.25	-1.1
1,167,169	+		GFF1160	0.25	+0.5
1,167,185	+		GFF1160	0.26	-0.6
1,167,191	+		GFF1160	0.27	-0.3
1,167,191	+		GFF1160	0.27	-2.5
1,167,193	-		GFF1160	0.27	-0.3
1,167,193	-		GFF1160	0.27	+0.3
1,167,231	+		GFF1160	0.30	+0.2
1,167,238	+		GFF1160	0.30	-0.8
1,167,238	+		GFF1160	0.30	+0.2
1,167,239	-		GFF1160	0.30	-2.7
1,167,248	+		GFF1160	0.31	-0.1
1,167,248	+		GFF1160	0.31	+0.0
1,167,248	+		GFF1160	0.31	+0.6
1,167,248	+		GFF1160	0.31	-0.7
1,167,248	+		GFF1160	0.31	-0.1
1,167,248	+		GFF1160	0.31	+1.0
1,167,248	+		GFF1160	0.31	-0.6
1,167,248	+		GFF1160	0.31	-0.2
1,167,248	+		GFF1160	0.31	-1.5
1,167,253	+		GFF1160	0.31	+0.5
1,167,256	-		GFF1160	0.31	-2.5
1,167,256	-		GFF1160	0.31	+0.3
1,167,256	-		GFF1160	0.31	-0.8
1,167,256	-		GFF1160	0.31	+0.1
1,167,256	-		GFF1160	0.31	-0.2
1,167,256	-		GFF1160	0.31	+1.0
1,167,256	-		GFF1160	0.31	+0.1
1,167,256	-		GFF1160	0.31	-1.5
1,167,256	-		GFF1160	0.31	-0.4
1,167,256	-		GFF1160	0.31	-1.2
1,167,256	-		GFF1160	0.31	-1.9
1,167,256	-		GFF1160	0.31	+0.5
1,167,256	-		GFF1160	0.31	+0.7
1,167,256	-		GFF1160	0.31	+0.5
1,167,266	-		GFF1160	0.32	-0.1
1,167,266	-		GFF1160	0.32	-1.8
1,167,268	+		GFF1160	0.32	-0.0
1,167,268	+		GFF1160	0.32	-0.9
1,167,268	+		GFF1160	0.32	-0.9
1,167,276	-		GFF1160	0.33	-0.2
1,167,276	-		GFF1160	0.33	+0.1
1,167,276	-		GFF1160	0.33	+0.2
1,167,276	-		GFF1160	0.33	-1.0
1,167,288	+		GFF1160	0.34	+0.7
1,167,288	+		GFF1160	0.34	+1.2
1,167,306	-		GFF1160	0.35	+0.1
1,167,313	-		GFF1160	0.36	-2.0
1,167,313	-		GFF1160	0.36	-1.8
1,167,313	-		GFF1160	0.36	-0.1
1,167,313	-		GFF1160	0.36	-0.5
1,167,313	-		GFF1160	0.36	-2.1
1,167,315	+		GFF1160	0.36	+0.0
1,167,320	+		GFF1160	0.36	+0.3
1,167,320	+		GFF1160	0.36	+0.7
1,167,323	-		GFF1160	0.36	-1.1
1,167,323	-		GFF1160	0.36	+0.1
1,167,323	-		GFF1160	0.36	-0.7
1,167,328	+		GFF1160	0.37	+0.2
1,167,329	-		GFF1160	0.37	-0.4
1,167,336	-		GFF1160	0.37	-1.4
1,167,339	-		GFF1160	0.37	+0.5
1,167,354	+		GFF1160	0.39	-1.0
1,167,383	+		GFF1160	0.41	+1.3
1,167,394	+		GFF1160	0.41	+0.2
1,167,403	+		GFF1160	0.42	-1.0
1,167,403	+		GFF1160	0.42	+0.3
1,167,408	+		GFF1160	0.42	+0.1
1,167,408	+		GFF1160	0.42	-0.3
1,167,428	+		GFF1160	0.44	-1.2
1,167,428	+		GFF1160	0.44	+0.5
1,167,436	-		GFF1160	0.44	+0.6
1,167,436	-		GFF1160	0.44	-0.5
1,167,436	-		GFF1160	0.44	-1.3
1,167,436	-		GFF1160	0.44	-0.8
1,167,445	+		GFF1160	0.45	-0.8
1,167,445	+		GFF1160	0.45	-1.4
1,167,445	+		GFF1160	0.45	+0.6
1,167,445	+		GFF1160	0.45	+0.4
1,167,445	+		GFF1160	0.45	-0.4
1,167,445	+		GFF1160	0.45	-0.4
1,167,445	+		GFF1160	0.45	-1.2
1,167,445	+		GFF1160	0.45	-0.7
1,167,445	+		GFF1160	0.45	-1.5
1,167,445	+		GFF1160	0.45	-0.1
1,167,445	+		GFF1160	0.45	-1.6
1,167,445	+		GFF1160	0.45	+0.1
1,167,448	-		GFF1160	0.45	-1.4
1,167,448	-		GFF1160	0.45	-0.2
1,167,448	-		GFF1160	0.45	-1.5
1,167,448	-		GFF1160	0.45	+1.8
1,167,448	-		GFF1160	0.45	+1.0
1,167,453	-		GFF1160	0.46	+0.7
1,167,453	-		GFF1160	0.46	-0.3
1,167,453	-		GFF1160	0.46	-0.2
1,167,453	-		GFF1160	0.46	-1.3
1,167,453	-		GFF1160	0.46	+0.4
1,167,453	-		GFF1160	0.46	+0.8
1,167,469	+		GFF1160	0.47	+0.3
1,167,469	+		GFF1160	0.47	+0.8
1,167,489	+		GFF1160	0.48	+0.3
1,167,506	-		GFF1160	0.50	-1.0
1,167,506	-		GFF1160	0.50	+1.1
1,167,511	+		GFF1160	0.50	+0.1
1,167,521	-		GFF1160	0.51	+0.2
1,167,551	-		GFF1160	0.53	+0.3
1,167,552	+		GFF1160	0.53	+0.4
1,167,562	+		GFF1160	0.54	-1.2
1,167,572	+		GFF1160	0.54	-0.5
1,167,578	-		GFF1160	0.55	+0.1
1,167,583	+		GFF1160	0.55	-1.3
1,167,610	+		GFF1160	0.57	+0.6
1,167,636	-		GFF1160	0.59	+0.2
1,167,648	+		GFF1160	0.60	+1.4
1,167,648	+		GFF1160	0.60	-0.3
1,167,663	+		GFF1160	0.61	+0.3
1,167,663	+		GFF1160	0.61	+0.4
1,167,663	+		GFF1160	0.61	+0.8
1,167,663	+		GFF1160	0.61	+0.0
1,167,663	+		GFF1160	0.61	-0.5
1,167,663	+		GFF1160	0.61	+1.5
1,167,668	+		GFF1160	0.61	-0.5
1,167,668	+		GFF1160	0.61	+0.5
1,167,670	+		GFF1160	0.61	+0.5
1,167,671	-		GFF1160	0.62	-1.4
1,167,671	-		GFF1160	0.62	-1.9
1,167,673	+		GFF1160	0.62	-1.2
1,167,676	-		GFF1160	0.62	-0.1
1,167,695	+		GFF1160	0.63	-0.9
1,167,700	+		GFF1160	0.64	-0.7
1,167,701	+		GFF1160	0.64	-1.5
1,167,703	-		GFF1160	0.64	-1.1
1,167,773	+		GFF1160	0.69	-1.0
1,167,835	-		GFF1160	0.74	-0.6
1,167,883	+		GFF1160	0.77	-0.8
1,167,886	+		GFF1160	0.77	-0.9
1,167,891	-		GFF1160	0.78	-0.3
1,167,892	-		GFF1160	0.78	-0.7
1,167,892	-		GFF1160	0.78	-0.7
1,167,897	+		GFF1160	0.78	+0.6
1,167,897	+		GFF1160	0.78	-1.4
1,167,897	+		GFF1160	0.78	+0.4
1,167,897	+		GFF1160	0.78	+0.2
1,167,897	+		GFF1160	0.78	+0.6
1,167,905	-		GFF1160	0.79	-1.5
1,167,905	-		GFF1160	0.79	+0.1
1,167,905	-		GFF1160	0.79	+0.4
1,167,905	-		GFF1160	0.79	-1.7
1,167,923	-		GFF1160	0.80	-0.5
1,167,931	-		GFF1160	0.80	+1.3
1,167,942	+		GFF1160	0.81	+1.1
1,167,948	+		GFF1160	0.82	-1.5
1,167,948	+		GFF1160	0.82	-0.4
1,167,956	+		GFF1160	0.82	-1.7
1,167,956	+		GFF1160	0.82	+0.2
1,167,963	+		GFF1160	0.83	+0.9
1,167,964	-		GFF1160	0.83	+0.5
1,167,968	+		GFF1160	0.83	-1.6
1,167,968	+		GFF1160	0.83	-1.6
1,167,968	+		GFF1160	0.83	-0.5
1,167,971	-		GFF1160	0.83	-1.5
1,167,971	-		GFF1160	0.83	+0.5
1,167,976	-		GFF1160	0.84	-0.2
1,167,976	-		GFF1160	0.84	+0.2
1,167,991	+		GFF1160	0.85	-0.3
1,168,018	+		GFF1160	0.87	-0.2
1,168,059	-		GFF1160	0.90	+0.6
1,168,085	+				-1.3
1,168,085	+				-0.7
1,168,085	+				-1.5
1,168,085	+				-1.7
1,168,086	-				-1.3
1,168,086	-				-0.8
1,168,093	-				-0.5
1,168,094	+				+1.0
1,168,095	+				-2.1
1,168,099	+				+0.7
1,168,099	+				+0.2
1,168,099	+				-0.9
1,168,099	+				-0.7
1,168,107	-				+0.8
1,168,107	-				+1.0
1,168,107	-				-0.5
1,168,133	+				-0.4
1,168,133	+				+1.3
1,168,141	-				-1.0
1,168,141	-				+0.7
1,168,151	-				-1.7
1,168,156	+				-0.1
1,168,164	-				+1.1
1,168,208	+				-1.0
1,168,208	+				+1.8
1,168,246	-				+0.1
1,168,258	+				+1.5
1,168,594	+				+1.1
1,168,599	+				-0.1
1,168,643	-				-2.2
1,168,645	-				+0.4
1,168,696	+				-0.3
1,168,701	+				+0.5
1,168,704	+				-0.9
1,168,704	+				+1.2
1,168,828	+				-1.5
1,168,828	+				-1.8
1,168,840	+				+1.6
1,168,848	-				-0.1
1,168,850	-				-0.6
1,168,855	+				-1.3
1,168,860	+				+0.2
1,168,894	+				-0.8
1,168,900	-				+0.1
1,168,923	+				+0.8
1,168,925	+				+0.7
1,168,925	+				-1.1
1,168,925	+				+0.0
1,168,931	-				-0.5
1,168,946	+				+0.9
1,168,946	+				-0.3
1,168,954	-				-1.5
1,168,954	-				+1.6
1,168,959	+				-0.4
1,168,966	+				-1.5
1,168,983	-				-0.3
1,168,999	-				+0.3
1,169,001	+				+0.1
1,169,001	+				+0.8
1,169,019	-				+0.0
1,169,019	-				+0.4
1,169,019	-				+0.3
1,169,019	-				-0.2
1,169,019	-				-0.6
1,169,061	+				-2.3
1,169,085	+				-0.5
1,169,104	+		GFF1163	0.15	-1.1
1,169,134	+		GFF1163	0.31	-0.1
1,169,140	-		GFF1163	0.34	-0.2
1,169,166	-		GFF1163	0.49	-2.0
1,169,168	+		GFF1163	0.50	-0.5
1,169,168	+		GFF1163	0.50	+0.5
1,169,168	+		GFF1163	0.50	+0.0
1,169,170	+		GFF1163	0.51	+0.7
1,169,170	+		GFF1163	0.51	-0.4
1,169,176	-		GFF1163	0.54	-0.6
1,169,176	-		GFF1163	0.54	+0.0
1,169,176	-		GFF1163	0.54	-2.1
1,169,180	+		GFF1163	0.56	+0.2
1,169,188	-		GFF1163	0.61	+0.3
1,169,192	-		GFF1163	0.63	-2.8