Strain Fitness in Sphingobium sp. HT1-2 around GFF1137

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,139,127	-				-0.3
1,139,161	-				-0.5
1,139,163	+				-0.6
1,139,169	-		GFF1134	0.13	+0.5
1,139,182	+		GFF1134	0.23	+0.3
1,139,215	+		GFF1134	0.46	+0.2
1,139,215	+		GFF1134	0.46	+0.5
1,139,215	+		GFF1134	0.46	-1.0
1,139,215	+		GFF1134	0.46	+0.3
1,139,219	-		GFF1134	0.49	+1.2
1,139,223	-		GFF1134	0.52	-1.3
1,139,223	-		GFF1134	0.52	-1.5
1,139,229	+		GFF1134	0.56	+0.5
1,139,229	+		GFF1134	0.56	-0.2
1,139,229	-		GFF1134	0.56	+0.7
1,139,235	+		GFF1134	0.60	+1.1
1,139,237	-		GFF1134	0.62	-1.1
1,139,237	-		GFF1134	0.62	+0.6
1,139,247	-		GFF1134	0.69	+0.3
1,139,281	+				+0.5
1,139,301	-				+0.3
1,139,301	-				-0.3
1,139,303	-				-0.1
1,139,303	-				+0.9
1,139,317	+				+1.0
1,139,323	-				+0.9
1,139,342	+				+0.1
1,139,348	-				+0.8
1,139,348	-				-0.2
1,139,363	-				-0.1
1,139,378	+				+0.5
1,139,402	+		GFF1135	0.13	+0.4
1,139,402	+		GFF1135	0.13	-2.1
1,139,402	+		GFF1135	0.13	+0.6
1,139,410	-		GFF1135	0.16	+0.1
1,139,431	+		GFF1135	0.23	+0.4
1,139,441	+		GFF1135	0.26	-0.5
1,139,449	-		GFF1135	0.29	+0.7
1,139,450	+		GFF1135	0.29	-0.5
1,139,452	-		GFF1135	0.30	-1.0
1,139,516	+		GFF1135	0.51	+0.2
1,139,516	+		GFF1135	0.51	+0.0
1,139,516	+		GFF1135	0.51	+0.7
1,139,516	+		GFF1135	0.51	-0.4
1,139,518	+		GFF1135	0.52	-0.1
1,139,518	+		GFF1135	0.52	-0.7
1,139,520	+		GFF1135	0.52	-0.1
1,139,524	-		GFF1135	0.54	-0.4
1,139,524	-		GFF1135	0.54	-0.6
1,139,524	-		GFF1135	0.54	-1.2
1,139,534	-		GFF1135	0.57	+0.4
1,139,542	+		GFF1135	0.60	-0.2
1,139,545	-		GFF1135	0.61	-1.3
1,139,545	-		GFF1135	0.61	-0.8
1,139,545	-		GFF1135	0.61	-0.6
1,139,547	+		GFF1135	0.61	+1.1
1,139,547	+		GFF1135	0.61	-0.7
1,139,550	-		GFF1135	0.62	+0.3
1,139,550	-		GFF1135	0.62	-1.8
1,139,550	-		GFF1135	0.62	-1.1
1,139,550	-		GFF1135	0.62	-0.5
1,139,555	-		GFF1135	0.64	+0.7
1,139,559	+		GFF1135	0.65	+0.5
1,139,571	+		GFF1135	0.69	-0.1
1,139,571	+		GFF1135	0.69	+1.1
1,139,571	+		GFF1135	0.69	+1.2
1,139,571	+		GFF1135	0.69	-0.4
1,139,571	+		GFF1135	0.69	-0.7
1,139,576	+		GFF1135	0.71	+0.7
1,139,576	+		GFF1135	0.71	-1.3
1,139,579	-		GFF1135	0.72	+0.9
1,139,579	-		GFF1135	0.72	-0.9
1,139,589	-		GFF1135	0.75	+0.1
1,139,591	+		GFF1135	0.76	-1.3
1,139,591	+		GFF1135	0.76	-0.8
1,139,591	+		GFF1135	0.76	-0.9
1,139,591	+		GFF1135	0.76	+0.5
1,139,591	+		GFF1135	0.76	+0.1
1,139,591	+		GFF1135	0.76	-0.2
1,139,591	+		GFF1135	0.76	-0.4
1,139,591	+		GFF1135	0.76	-1.6
1,139,591	+		GFF1135	0.76	-2.3
1,139,591	+		GFF1135	0.76	+0.6
1,139,591	+		GFF1135	0.76	-1.6
1,139,591	+		GFF1135	0.76	-1.8
1,139,591	+		GFF1135	0.76	-0.1
1,139,591	+		GFF1135	0.76	-0.9
1,139,591	+		GFF1135	0.76	-0.3
1,139,591	+		GFF1135	0.76	-0.4
1,139,591	+		GFF1135	0.76	-1.8
1,139,599	-		GFF1135	0.79	+0.2
1,139,599	-		GFF1135	0.79	-1.2
1,139,599	-		GFF1135	0.79	-0.0
1,139,599	-		GFF1135	0.79	-0.1
1,139,599	-		GFF1135	0.79	-0.3
1,139,599	-		GFF1135	0.79	+0.0
1,139,599	-		GFF1135	0.79	+0.5
1,139,599	-		GFF1135	0.79	-0.3
1,139,599	-		GFF1135	0.79	-1.6
1,139,599	-		GFF1135	0.79	-0.1
1,139,599	-		GFF1135	0.79	+0.1
1,139,599	-		GFF1135	0.79	-1.3
1,139,599	-		GFF1135	0.79	-1.0
1,139,599	-		GFF1135	0.79	-1.5
1,139,599	-		GFF1135	0.79	+0.5
1,139,599	-		GFF1135	0.79	+0.6
1,139,599	-		GFF1135	0.79	-0.5
1,139,599	-		GFF1135	0.79	+0.9
1,139,599	-		GFF1135	0.79	+0.8
1,139,599	-		GFF1135	0.79	-0.1
1,139,599	-		GFF1135	0.79	-0.1
1,139,599	-		GFF1135	0.79	-1.3
1,139,599	-		GFF1135	0.79	-0.4
1,139,599	-		GFF1135	0.79	-0.1
1,139,599	-		GFF1135	0.79	+0.3
1,139,617	+		GFF1135	0.85	+0.0
1,139,627	+		GFF1135	0.88	-1.9
1,139,627	+		GFF1135	0.88	-1.0
1,139,627	+		GFF1135	0.88	-0.8
1,139,627	+		GFF1135	0.88	-0.8
1,139,635	-				+0.1
1,139,635	-				-1.1
1,139,666	+				-1.1
1,139,672	+				+0.5
1,139,676	-				+0.2
1,139,681	+				-0.3
1,139,681	+				-0.4
1,139,689	-				-1.0
1,139,693	+				+0.3
1,139,711	+				+0.5
1,139,717	+				-0.3
1,139,717	+				-0.8
1,139,725	-				+1.7
1,139,725	-				+0.3
1,139,731	+				-0.8
1,139,731	+				-1.0
1,139,731	+				-0.8
1,139,731	+				-0.4
1,139,731	+				-1.0
1,139,736	+				-2.1
1,139,736	+				-0.7
1,139,739	-				+1.4
1,139,744	-				-0.2
1,139,745	-				+0.2
1,139,745	-				-2.1
1,139,752	+		GFF1136	0.10	+0.5
1,139,755	+		GFF1136	0.11	-3.5
1,139,755	+		GFF1136	0.11	+0.2
1,139,755	-		GFF1136	0.11	-0.7
1,139,755	-		GFF1136	0.11	+0.3
1,139,760	-		GFF1136	0.12	-0.1
1,139,760	-		GFF1136	0.12	-0.5
1,139,773	-		GFF1136	0.16	+0.9
1,139,785	+		GFF1136	0.19	-1.8
1,139,785	+		GFF1136	0.19	-0.2
1,139,785	+		GFF1136	0.19	+0.6
1,139,785	+		GFF1136	0.19	-2.1
1,139,790	+		GFF1136	0.20	+0.6
1,139,790	+		GFF1136	0.20	-0.2
1,139,793	-		GFF1136	0.21	+1.1
1,139,793	-		GFF1136	0.21	-2.2
1,139,793	-		GFF1136	0.21	-0.2
1,139,793	-		GFF1136	0.21	-0.2
1,139,793	-		GFF1136	0.21	-0.5
1,139,793	-		GFF1136	0.21	+0.2
1,139,793	-		GFF1136	0.21	-0.1
1,139,793	-		GFF1136	0.21	-0.1
1,139,795	+		GFF1136	0.22	-0.3
1,139,798	-		GFF1136	0.23	-2.0
1,139,798	-		GFF1136	0.23	-1.5
1,139,798	-		GFF1136	0.23	+0.3
1,139,817	-		GFF1136	0.28	-1.4
1,139,817	-		GFF1136	0.28	-1.9
1,139,817	-		GFF1136	0.28	+0.0
1,139,817	-		GFF1136	0.28	-1.7
1,139,821	-		GFF1136	0.29	+0.2
1,139,832	+		GFF1136	0.32	-1.3
1,139,873	+		GFF1136	0.43	-1.0
1,139,873	+		GFF1136	0.43	-0.5
1,139,881	-		GFF1136	0.45	+0.3
1,139,887	-		GFF1136	0.47	+0.5
1,139,894	+		GFF1136	0.49	+1.2
1,139,913	-		GFF1136	0.54	+0.1
1,139,917	-		GFF1136	0.55	-0.2
1,139,937	+		GFF1136	0.61	-1.2
1,139,937	+		GFF1136	0.61	-2.0
1,139,938	+		GFF1136	0.61	-0.4
1,139,938	+		GFF1136	0.61	+0.1
1,139,938	+		GFF1136	0.61	+0.7
1,139,938	+		GFF1136	0.61	+0.6
1,139,940	+		GFF1136	0.61	-0.6
1,139,945	-		GFF1136	0.63	+1.4
1,139,945	-		GFF1136	0.63	-0.1
1,139,945	-		GFF1136	0.63	-2.0
1,139,945	-		GFF1136	0.63	-0.6
1,139,945	-		GFF1136	0.63	-0.3
1,139,945	-		GFF1136	0.63	+0.8
1,139,945	-		GFF1136	0.63	-1.0
1,139,945	-		GFF1136	0.63	-0.7
1,139,945	-		GFF1136	0.63	+0.7
1,139,946	-		GFF1136	0.63	+0.3
1,139,946	-		GFF1136	0.63	+0.3
1,139,947	+		GFF1136	0.63	+0.3
1,139,955	-		GFF1136	0.66	+0.5
1,139,955	-		GFF1136	0.66	-0.2
1,139,977	-		GFF1136	0.72	-0.3
1,139,977	-		GFF1136	0.72	-1.1
1,139,978	-		GFF1136	0.72	+0.4
1,139,992	-		GFF1136	0.76	-1.6
1,139,995	+		GFF1136	0.77	-0.2
1,140,021	+		GFF1136	0.84	-1.5
1,140,021	+		GFF1136	0.84	-1.2
1,140,021	+		GFF1136	0.84	+1.7
1,140,034	-		GFF1136	0.87	+1.4
1,140,044	-				-2.6
1,140,045	-				-2.6
1,140,063	+				+0.3
1,140,093	+				-1.5
1,140,097	+				-0.8
1,140,097	+				-2.0
1,140,124	+				-1.6
1,140,124	+				+0.1
1,140,132	-				-2.3
1,140,132	-				-0.8
1,140,132	-				+0.7
1,140,158	-				-1.5
1,140,161	+				-1.4
1,140,161	+				-0.3
1,140,169	-				-1.3
1,140,169	-				-1.5
1,140,179	+				-0.1
1,140,212	+				+0.0
1,140,220	-				+0.2
1,140,229	-				-2.1
1,140,229	-				-0.3
1,140,229	-				-0.7
1,140,238	+				+0.6
1,140,251	-				-0.0
1,140,254	+				+1.6
1,140,257	-				+0.1
1,140,309	+		GFF1137	0.12	-1.2
1,140,309	+		GFF1137	0.12	+1.3
1,140,310	-		GFF1137	0.12	+1.3
1,140,319	-		GFF1137	0.13	+0.3
1,140,321	+		GFF1137	0.13	+0.3
1,140,321	+		GFF1137	0.13	-0.6
1,140,321	+		GFF1137	0.13	-0.1
1,140,329	-		GFF1137	0.13	-0.1
1,140,331	+		GFF1137	0.13	-0.7
1,140,331	+		GFF1137	0.13	-1.1
1,140,339	-		GFF1137	0.14	+1.0
1,140,339	-		GFF1137	0.14	+0.2
1,140,339	-		GFF1137	0.14	-0.7
1,140,340	-		GFF1137	0.14	-1.4
1,140,358	+		GFF1137	0.15	-2.4
1,140,358	+		GFF1137	0.15	-0.8
1,140,366	-		GFF1137	0.15	+0.6
1,140,366	-		GFF1137	0.15	-0.3
1,140,371	+		GFF1137	0.16	-1.1
1,140,375	-		GFF1137	0.16	-0.3
1,140,375	-		GFF1137	0.16	+0.7
1,140,379	-		GFF1137	0.16	-0.3
1,140,380	-		GFF1137	0.16	+0.5
1,140,383	+		GFF1137	0.16	+0.7
1,140,385	-		GFF1137	0.16	-0.5
1,140,385	-		GFF1137	0.16	-1.3
1,140,426	+		GFF1137	0.18	-1.1
1,140,426	+		GFF1137	0.18	+0.1
1,140,434	-		GFF1137	0.19	-0.4
1,140,434	-		GFF1137	0.19	-1.4
1,140,458	-		GFF1137	0.20	-0.6
1,140,458	-		GFF1137	0.20	-1.8
1,140,458	-		GFF1137	0.20	+1.0
1,140,493	+		GFF1137	0.22	-1.4
1,140,502	+		GFF1137	0.22	-0.5
1,140,502	+		GFF1137	0.22	+0.4
1,140,502	+		GFF1137	0.22	+0.5
1,140,502	+		GFF1137	0.22	-0.9
1,140,502	+		GFF1137	0.22	-2.4
1,140,502	+		GFF1137	0.22	-1.1
1,140,502	+		GFF1137	0.22	-1.1
1,140,502	+		GFF1137	0.22	+0.4
1,140,502	+		GFF1137	0.22	+1.0
1,140,502	+		GFF1137	0.22	+0.2
1,140,510	-		GFF1137	0.23	+0.7
1,140,510	-		GFF1137	0.23	-0.0
1,140,510	-		GFF1137	0.23	+0.7
1,140,510	-		GFF1137	0.23	-0.5
1,140,510	-		GFF1137	0.23	-1.7
1,140,510	-		GFF1137	0.23	+0.5
1,140,519	+		GFF1137	0.23	-0.5
1,140,603	-		GFF1137	0.28	-0.5
1,140,605	+		GFF1137	0.28	-1.1
1,140,610	+		GFF1137	0.28	-1.9
1,140,612	-		GFF1137	0.28	-0.8
1,140,661	+		GFF1137	0.31	-1.3
1,140,669	-		GFF1137	0.31	-0.5
1,140,685	-		GFF1137	0.32	-0.5
1,140,725	-		GFF1137	0.34	-2.0
1,140,735	+		GFF1137	0.35	-0.2
1,140,756	+		GFF1137	0.36	-0.5
1,140,756	+		GFF1137	0.36	-0.6
1,140,776	+		GFF1137	0.37	-0.6
1,140,776	+		GFF1137	0.37	+0.1
1,140,778	-		GFF1137	0.37	+0.1
1,140,805	+		GFF1137	0.39	-1.0
1,140,808	-		GFF1137	0.39	+1.4
1,140,813	-		GFF1137	0.39	-0.3
1,140,813	-		GFF1137	0.39	-0.3
1,140,813	-		GFF1137	0.39	+0.0
1,140,813	-		GFF1137	0.39	-0.1
1,140,815	+		GFF1137	0.39	-1.4
1,140,815	+		GFF1137	0.39	+0.7
1,140,815	+		GFF1137	0.39	-1.4
1,140,815	+		GFF1137	0.39	-0.3
1,140,815	+		GFF1137	0.39	-1.2
1,140,815	+		GFF1137	0.39	-0.7
1,140,815	+		GFF1137	0.39	-0.4
1,140,815	+		GFF1137	0.39	-1.1
1,140,815	+		GFF1137	0.39	+0.4
1,140,815	+		GFF1137	0.39	-0.5
1,140,815	+		GFF1137	0.39	-0.0
1,140,817	+		GFF1137	0.39	-2.3
1,140,818	-		GFF1137	0.39	+0.9
1,140,818	-		GFF1137	0.39	-2.6
1,140,818	-		GFF1137	0.39	-0.5
1,140,818	-		GFF1137	0.39	-0.4
1,140,823	-		GFF1137	0.39	-0.1
1,140,823	-		GFF1137	0.39	+0.5
1,140,823	-		GFF1137	0.39	+0.7
1,140,823	-		GFF1137	0.39	-1.0
1,140,823	-		GFF1137	0.39	-1.1
1,140,823	-		GFF1137	0.39	-0.5
1,140,823	-		GFF1137	0.39	-1.6
1,140,823	-		GFF1137	0.39	+0.0
1,140,823	-		GFF1137	0.39	-0.8
1,140,831	-		GFF1137	0.40	-0.8
1,140,831	-		GFF1137	0.40	-0.5
1,140,882	+		GFF1137	0.43	-2.3
1,140,882	+		GFF1137	0.43	-1.6
1,140,882	+		GFF1137	0.43	-1.0
1,140,882	+		GFF1137	0.43	+0.9
1,140,882	+		GFF1137	0.43	+0.4
1,140,882	+		GFF1137	0.43	+0.3
1,140,882	+		GFF1137	0.43	+1.1
1,140,882	+		GFF1137	0.43	-0.7
1,140,882	+		GFF1137	0.43	+0.5
1,140,882	+		GFF1137	0.43	-0.4
1,140,882	+		GFF1137	0.43	-1.0
1,140,882	+		GFF1137	0.43	+0.1
1,140,890	-		GFF1137	0.43	+0.2
1,140,890	-		GFF1137	0.43	-1.8
1,140,890	-		GFF1137	0.43	-0.2
1,140,890	-		GFF1137	0.43	-0.6
1,140,890	-		GFF1137	0.43	-0.3
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1,140,890	-		GFF1137	0.43	-0.1
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1,140,890	-		GFF1137	0.43	+0.2
1,140,890	-		GFF1137	0.43	+0.0
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1,140,890	-		GFF1137	0.43	-0.4
1,140,892	+		GFF1137	0.43	-1.2
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1,140,911	+		GFF1137	0.44	-1.6
1,140,911	+		GFF1137	0.44	-2.1
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1,141,192	-		GFF1137	0.59	-0.3
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1,141,222	-		GFF1137	0.61	-1.1
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1,141,222	-		GFF1137	0.61	-0.5
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1,141,232	+		GFF1137	0.61	+0.7
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1,141,292	-		GFF1137	0.64	-0.4
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1,141,348	-		GFF1137	0.67	-0.4
1,141,372	+		GFF1137	0.69	+2.1
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1,141,400	+		GFF1137	0.70	+0.4
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1,141,407	-		GFF1137	0.70	+0.3
1,141,407	-		GFF1137	0.70	-1.1
1,141,407	-		GFF1137	0.70	-2.3
1,141,407	-		GFF1137	0.70	-1.9
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1,141,407	-		GFF1137	0.70	+1.8
1,141,407	-		GFF1137	0.70	-2.0
1,141,407	-		GFF1137	0.70	+0.9
1,141,408	-		GFF1137	0.70	+0.3
1,141,408	-		GFF1137	0.70	-1.7
1,141,408	-		GFF1137	0.70	+1.0
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1,141,427	+		GFF1137	0.71	-1.5
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1,141,442	+		GFF1137	0.72	+0.8
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1,141,452	-		GFF1137	0.73	-0.8
1,141,490	+		GFF1137	0.75	-0.9
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1,141,498	-		GFF1137	0.75	-0.6
1,141,498	-		GFF1137	0.75	+0.7
1,141,503	+		GFF1137	0.75	-0.5
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1,141,503	+		GFF1137	0.75	-1.1
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1,141,511	-		GFF1137	0.76	-0.4
1,141,549	+		GFF1137	0.78	-0.6
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1,141,577	+		GFF1137	0.79	-1.6
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1,141,595	+		GFF1137	0.80	-0.3
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1,141,603	-		GFF1137	0.81	+0.7
1,141,603	-		GFF1137	0.81	+0.2
1,141,605	+		GFF1137	0.81	-1.0
1,141,637	+		GFF1137	0.83	-0.4
1,141,645	-		GFF1137	0.83	+1.2
1,141,648	+		GFF1137	0.83	-0.8
1,141,648	+		GFF1137	0.83	-0.4
1,141,648	-		GFF1137	0.83	-0.3
1,141,653	+		GFF1137	0.83	-1.3
1,141,656	-		GFF1137	0.84	-1.3
1,141,714	+		GFF1137	0.87	-2.8
1,141,722	-		GFF1137	0.87	+0.3
1,141,722	-		GFF1137	0.87	-0.3
1,141,722	-		GFF1137	0.87	-0.9
1,141,722	-		GFF1137	0.87	-0.3
1,141,724	+		GFF1137	0.87	-2.0
1,141,724	+		GFF1137	0.87	-0.2
1,141,746	-		GFF1137	0.88	-2.4
1,141,771	+		GFF1137	0.90	-2.4
1,141,777	+		GFF1137	0.90	-0.1
1,141,779	-				+0.2
1,141,779	-				-0.1
1,141,802	+				-2.2
1,141,802	+				-0.8
1,141,805	-				+0.4
1,141,810	-				+0.2
1,141,810	-				-2.0
1,141,810	-				-2.3
1,141,837	+				+0.3
1,141,837	+				+0.1
1,141,837	+				-0.3
1,141,837	+				-0.4
1,141,837	+				-0.6
1,141,837	+				-1.1
1,141,840	-				-2.0
1,141,844	+				-0.7
1,141,845	-				-0.9
1,141,845	-				-0.6
1,141,845	-				-0.5
1,141,845	-				-1.0
1,141,845	-				-0.1
1,141,845	-				+1.2
1,141,871	+				-0.6
1,141,889	-				+0.2
1,141,895	-				-0.2
1,141,907	+				+0.2
1,141,920	-				-0.6
1,141,975	-				-0.2
1,141,975	-				+0.7
1,141,998	-				+0.1
1,142,015	+				+0.1
1,142,015	+				-0.2
1,142,023	-				-2.6
1,142,032	-				-0.1
1,142,032	-				-0.3
1,142,035	+				-0.3
1,142,035	+				-2.3
1,142,053	+				-0.3
1,142,083	-		GFF1138	0.12	-0.8
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1,142,171	+		GFF1138	0.21	+0.6
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