Strain Fitness in Sphingobium sp. HT1-2 around GFF1009

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,009,390	+				+1.9
1,009,390	+				-1.1
1,009,398	-				-0.5
1,009,398	-				-0.1
1,009,430	+				+0.2
1,009,448	+				-0.1
1,009,456	-				-0.7
1,009,456	-				-0.4
1,009,456	-				-1.5
1,009,487	-		GFF1008	0.12	+0.3
1,009,494	-		GFF1008	0.13	+1.3
1,009,505	+		GFF1008	0.14	+0.4
1,009,510	+		GFF1008	0.14	-0.4
1,009,510	+		GFF1008	0.14	+0.4
1,009,510	+		GFF1008	0.14	-1.1
1,009,510	+		GFF1008	0.14	+0.2
1,009,518	-		GFF1008	0.15	-0.5
1,009,518	-		GFF1008	0.15	-0.2
1,009,518	-		GFF1008	0.15	-0.3
1,009,518	-		GFF1008	0.15	-0.8
1,009,518	-		GFF1008	0.15	+0.2
1,009,540	-		GFF1008	0.17	-1.5
1,009,545	-		GFF1008	0.18	-0.8
1,009,557	-		GFF1008	0.19	-0.9
1,009,562	+		GFF1008	0.20	+0.4
1,009,564	-		GFF1008	0.20	-0.4
1,009,566	+		GFF1008	0.20	-0.1
1,009,568	+		GFF1008	0.20	-0.3
1,009,576	-		GFF1008	0.21	-0.2
1,009,582	+		GFF1008	0.22	-0.4
1,009,595	-		GFF1008	0.23	+0.9
1,009,597	+		GFF1008	0.23	-0.5
1,009,597	+		GFF1008	0.23	-0.2
1,009,605	-		GFF1008	0.24	+1.0
1,009,605	-		GFF1008	0.24	-0.1
1,009,605	-		GFF1008	0.24	-0.7
1,009,648	-		GFF1008	0.28	+0.8
1,009,648	-		GFF1008	0.28	+0.1
1,009,689	+		GFF1008	0.33	-0.8
1,009,690	-		GFF1008	0.33	-0.8
1,009,697	+		GFF1008	0.34	+0.3
1,009,704	+		GFF1008	0.34	-1.4
1,009,713	+		GFF1008	0.35	-0.1
1,009,746	+		GFF1008	0.39	-1.2
1,009,754	-		GFF1008	0.39	-0.1
1,009,769	+		GFF1008	0.41	+0.4
1,009,777	-		GFF1008	0.42	-0.5
1,009,779	+		GFF1008	0.42	-1.9
1,009,779	+		GFF1008	0.42	-0.3
1,009,786	+		GFF1008	0.43	+1.2
1,009,786	+		GFF1008	0.43	-1.8
1,009,787	-		GFF1008	0.43	+1.2
1,009,787	-		GFF1008	0.43	-0.5
1,009,787	-		GFF1008	0.43	-2.6
1,009,787	-		GFF1008	0.43	+1.3
1,009,787	-		GFF1008	0.43	-0.5
1,009,787	-		GFF1008	0.43	+0.1
1,009,787	-		GFF1008	0.43	-0.7
1,009,787	-		GFF1008	0.43	-0.4
1,009,792	-		GFF1008	0.43	+1.3
1,009,793	+		GFF1008	0.43	+1.5
1,009,793	+		GFF1008	0.43	+1.6
1,009,795	-		GFF1008	0.44	+1.2
1,009,801	-		GFF1008	0.44	-2.1
1,009,801	-		GFF1008	0.44	+0.2
1,009,811	-		GFF1008	0.45	+0.5
1,009,824	+		GFF1008	0.47	-0.5
1,009,824	+		GFF1008	0.47	-2.1
1,009,850	+		GFF1008	0.49	-0.1
1,009,850	+		GFF1008	0.49	-0.5
1,009,850	+		GFF1008	0.49	-0.8
1,009,850	+		GFF1008	0.49	-0.6
1,009,858	-		GFF1008	0.50	-0.5
1,009,858	-		GFF1008	0.50	+1.0
1,009,858	-		GFF1008	0.50	-0.1
1,009,885	+		GFF1008	0.53	-2.3
1,009,891	-		GFF1008	0.54	+0.7
1,009,920	-		GFF1008	0.57	+0.1
1,009,920	-		GFF1008	0.57	-1.7
1,009,922	+		GFF1008	0.57	-0.1
1,009,928	-		GFF1008	0.57	+0.5
1,009,929	+		GFF1008	0.58	-0.8
1,009,930	-		GFF1008	0.58	-0.4
1,009,930	-		GFF1008	0.58	-0.5
1,009,930	-		GFF1008	0.58	-0.5
1,009,930	-		GFF1008	0.58	-2.5
1,009,935	+		GFF1008	0.58	-1.5
1,009,943	-		GFF1008	0.59	-1.3
1,009,943	-		GFF1008	0.59	-2.3
1,009,952	+		GFF1008	0.60	-0.1
1,009,959	-		GFF1008	0.61	+0.2
1,009,960	-		GFF1008	0.61	-1.5
1,009,960	-		GFF1008	0.61	-0.6
1,009,960	-		GFF1008	0.61	+0.4
1,009,960	-		GFF1008	0.61	+0.1
1,009,960	-		GFF1008	0.61	-1.6
1,009,974	-		GFF1008	0.62	-1.7
1,009,986	+		GFF1008	0.63	+0.3
1,009,987	+		GFF1008	0.64	-1.4
1,010,009	+		GFF1008	0.66	+0.2
1,010,017	-		GFF1008	0.67	+0.2
1,010,023	+		GFF1008	0.67	+0.1
1,010,025	+		GFF1008	0.67	-0.4
1,010,033	-		GFF1008	0.68	-0.6
1,010,050	-		GFF1008	0.70	-1.8
1,010,069	+		GFF1008	0.72	+0.6
1,010,070	+		GFF1008	0.72	-0.6
1,010,075	+		GFF1008	0.73	-0.3
1,010,095	+		GFF1008	0.75	-1.7
1,010,097	+		GFF1008	0.75	-0.1
1,010,101	-		GFF1008	0.75	-1.5
1,010,103	-		GFF1008	0.76	+0.5
1,010,119	+		GFF1008	0.77	-1.2
1,010,127	-		GFF1008	0.78	+1.0
1,010,127	-		GFF1008	0.78	+1.2
1,010,163	+		GFF1008	0.82	-0.3
1,010,198	+		GFF1008	0.85	+1.2
1,010,213	+		GFF1008	0.87	+0.0
1,010,213	+		GFF1008	0.87	-1.0
1,010,213	+		GFF1008	0.87	+0.0
1,010,213	+		GFF1008	0.87	-0.6
1,010,221	-		GFF1008	0.88	-0.1
1,010,224	+		GFF1008	0.88	+1.2
1,010,224	+		GFF1008	0.88	+0.6
1,010,224	+		GFF1008	0.88	+0.2
1,010,224	+		GFF1008	0.88	-1.4
1,010,227	-		GFF1008	0.88	-1.5
1,010,232	-		GFF1008	0.89	+0.1
1,010,232	-		GFF1008	0.89	+1.2
1,010,232	-		GFF1008	0.89	-0.3
1,010,232	-		GFF1008	0.89	+0.6
1,010,232	-		GFF1008	0.89	-0.8
1,010,252	+				-2.3
1,010,252	+				-0.9
1,010,252	+				+0.3
1,010,252	+				-0.9
1,010,260	-				+0.5
1,010,260	-				-0.6
1,010,260	-				+1.1
1,010,260	-				+0.2
1,010,260	-				+0.2
1,010,260	-				-0.6
1,010,298	-				-1.2
1,010,328	-				-1.8
1,010,332	+				+0.6
1,010,332	+				+0.1
1,010,332	+				+0.3
1,010,340	-				-1.4
1,010,340	-				+0.1
1,010,340	-				-2.1
1,010,340	-				+0.7
1,010,340	-				+0.5
1,010,366	-				-0.6
1,010,385	+				-0.6
1,010,410	-				-0.1
1,010,416	+				-0.6
1,010,435	-				+0.6
1,010,435	-				-1.4
1,010,435	-				+0.1
1,010,437	+				+0.8
1,010,445	-				-0.1
1,010,484	+				-0.1
1,010,484	+				-1.7
1,010,484	+				-0.1
1,010,484	+				-1.4
1,010,484	+				-0.2
1,010,489	+				-0.2
1,010,489	+				-0.5
1,010,492	-		GFF1009	0.10	-0.1
1,010,492	-		GFF1009	0.10	+1.3
1,010,492	-		GFF1009	0.10	-2.0
1,010,497	-		GFF1009	0.11	-0.5
1,010,497	-		GFF1009	0.11	+0.0
1,010,500	+		GFF1009	0.11	-0.7
1,010,502	-		GFF1009	0.11	-2.1
1,010,520	-		GFF1009	0.13	+0.3
1,010,532	+		GFF1009	0.14	+1.6
1,010,532	+		GFF1009	0.14	+0.2
1,010,540	-		GFF1009	0.15	-0.8
1,010,540	-		GFF1009	0.15	-2.0
1,010,540	-		GFF1009	0.15	+1.1
1,010,568	+		GFF1009	0.17	-1.5
1,010,568	+		GFF1009	0.17	-1.3
1,010,568	+		GFF1009	0.17	+0.9
1,010,568	+		GFF1009	0.17	-0.2
1,010,570	+		GFF1009	0.18	+1.5
1,010,573	+		GFF1009	0.18	-0.4
1,010,576	-		GFF1009	0.18	+0.1
1,010,578	+		GFF1009	0.18	-1.5
1,010,578	-		GFF1009	0.18	-0.1
1,010,578	-		GFF1009	0.18	-0.4
1,010,581	-		GFF1009	0.19	-0.7
1,010,601	+		GFF1009	0.21	-1.8
1,010,627	-		GFF1009	0.23	+0.2
1,010,629	+		GFF1009	0.23	-1.6
1,010,629	+		GFF1009	0.23	-0.9
1,010,637	-		GFF1009	0.24	-1.5
1,010,714	-		GFF1009	0.31	+0.1
1,010,731	-		GFF1009	0.33	-0.5
1,010,738	+		GFF1009	0.34	-0.3
1,010,738	+		GFF1009	0.34	-1.6
1,010,746	-		GFF1009	0.34	-0.1
1,010,746	-		GFF1009	0.34	+0.3
1,010,748	-		GFF1009	0.35	-1.1
1,010,769	-		GFF1009	0.37	-1.8
1,010,779	-		GFF1009	0.38	-0.4
1,010,791	+		GFF1009	0.39	-0.5
1,010,791	+		GFF1009	0.39	-1.5
1,010,791	+		GFF1009	0.39	+0.7
1,010,791	+		GFF1009	0.39	+0.8
1,010,791	+		GFF1009	0.39	+0.2
1,010,791	+		GFF1009	0.39	-2.0
1,010,799	-		GFF1009	0.39	-3.0
1,010,799	-		GFF1009	0.39	-1.8
1,010,799	-		GFF1009	0.39	-2.4
1,010,801	+		GFF1009	0.40	-0.1
1,010,801	+		GFF1009	0.40	-0.7
1,010,801	+		GFF1009	0.40	-0.2
1,010,801	+		GFF1009	0.40	-0.4
1,010,801	+		GFF1009	0.40	-0.5
1,010,801	+		GFF1009	0.40	-1.1
1,010,809	-		GFF1009	0.40	+0.6
1,010,809	-		GFF1009	0.40	-0.8
1,010,834	+		GFF1009	0.43	-1.5
1,010,842	-		GFF1009	0.44	-0.8
1,010,870	-		GFF1009	0.46	-0.6
1,010,885	-		GFF1009	0.48	-0.2
1,010,889	-		GFF1009	0.48	-1.6
1,010,899	-		GFF1009	0.49	+0.1
1,010,902	+		GFF1009	0.49	-0.2
1,010,902	+		GFF1009	0.49	+0.8
1,010,902	+		GFF1009	0.49	-0.9
1,010,902	+		GFF1009	0.49	-0.2
1,010,910	-		GFF1009	0.50	+0.3
1,010,910	-		GFF1009	0.50	+1.3
1,010,915	-		GFF1009	0.50	-0.3
1,010,915	-		GFF1009	0.50	+0.2
1,010,915	-		GFF1009	0.50	+0.3
1,010,937	-		GFF1009	0.53	-0.4
1,010,949	+		GFF1009	0.54	+0.5
1,011,009	-		GFF1009	0.59	-1.5
1,011,011	+		GFF1009	0.60	+0.2
1,011,013	+		GFF1009	0.60	-0.5
1,011,021	-		GFF1009	0.61	-1.6
1,011,034	+		GFF1009	0.62	+0.3
1,011,034	+		GFF1009	0.62	+0.5
1,011,034	+		GFF1009	0.62	+0.4
1,011,034	+		GFF1009	0.62	-0.5
1,011,034	+		GFF1009	0.62	-0.4
1,011,042	-		GFF1009	0.63	-1.0
1,011,042	-		GFF1009	0.63	-2.2
1,011,044	+		GFF1009	0.63	-1.4
1,011,044	+		GFF1009	0.63	+0.2
1,011,044	+		GFF1009	0.63	+0.9
1,011,046	-		GFF1009	0.63	-0.1
1,011,052	-		GFF1009	0.64	+0.4
1,011,052	-		GFF1009	0.64	-0.8
1,011,057	-		GFF1009	0.64	+0.5
1,011,076	+		GFF1009	0.66	-0.7
1,011,077	+		GFF1009	0.66	-0.2
1,011,081	+		GFF1009	0.66	-1.3
1,011,084	-		GFF1009	0.67	-0.4
1,011,089	-		GFF1009	0.67	-0.1
1,011,099	+		GFF1009	0.68	+0.3
1,011,099	-		GFF1009	0.68	+1.2
1,011,132	+		GFF1009	0.71	+0.9
1,011,212	+		GFF1009	0.79	-0.2
1,011,237	+		GFF1009	0.81	-0.8
1,011,237	+		GFF1009	0.81	-0.5
1,011,237	+		GFF1009	0.81	-0.2
1,011,237	+		GFF1009	0.81	-0.8
1,011,245	-		GFF1009	0.82	-0.1
1,011,245	-		GFF1009	0.82	-2.1
1,011,245	-		GFF1009	0.82	+1.9
1,011,245	-		GFF1009	0.82	+0.7
1,011,245	-		GFF1009	0.82	-0.5
1,011,245	-		GFF1009	0.82	-0.9
1,011,245	-		GFF1009	0.82	-2.2
1,011,317	+		GFF1009	0.89	-0.8
1,011,341	+				+0.6
1,011,363	+				+0.2
1,011,363	+				-0.4
1,011,371	-				+0.5
1,011,371	-				-0.4
1,011,376	-				-0.7
1,011,381	-				+0.2
1,011,393	-				-1.1
1,011,396	+				-0.3
1,011,414	+				+0.7
1,011,414	+				+0.2
1,011,414	-				-0.6
1,011,415	-				+0.5
1,011,422	-				+0.2
1,011,427	-				-1.7
1,011,436	-				+0.2
1,011,457	+				-1.1
1,011,467	-				-1.4
1,011,496	+				-0.5
1,011,496	+				+1.2
1,011,496	+				-1.7
1,011,504	-				-1.5
1,011,504	-				-2.1
1,011,504	-				-0.9
1,011,512	+				+0.6
1,011,525	+				+0.6
1,011,530	-				+0.2
1,011,544	+				+0.3
1,011,544	+				-0.2
1,011,544	+				+1.8
1,011,548	+				-0.3
1,011,552	-				-0.1
1,011,552	-				-0.2
1,011,552	-				-0.8
1,011,563	-				-0.8
1,011,565	+				+0.2
1,011,565	+				-2.1
1,011,565	+				-1.2
1,011,573	-				+0.0
1,011,575	+				-1.2
1,011,585	+				-1.4
1,011,589	+				+0.3
1,011,589	+				-0.0
1,011,589	+				-1.8
1,011,592	-				+1.4
1,011,597	-				+0.1
1,011,597	-				-0.8
1,011,597	-				+0.3
1,011,611	+		GFF1010	0.10	-1.0
1,011,611	+		GFF1010	0.10	-0.3
1,011,611	+		GFF1010	0.10	-2.1
1,011,611	+		GFF1010	0.10	+0.4
1,011,611	+		GFF1010	0.10	-0.1
1,011,617	-		GFF1010	0.11	-0.8
1,011,619	-		GFF1010	0.11	-1.1
1,011,619	-		GFF1010	0.11	+0.2
1,011,619	-		GFF1010	0.11	-0.7
1,011,619	-		GFF1010	0.11	+0.3
1,011,625	+		GFF1010	0.12	+0.8
1,011,643	-		GFF1010	0.14	-1.5
1,011,648	-		GFF1010	0.15	-0.7
1,011,676	-		GFF1010	0.18	-0.2
1,011,696	+		GFF1010	0.21	+1.7
1,011,711	-		GFF1010	0.22	-2.6
1,011,736	-		GFF1010	0.26	+0.8
1,011,758	-		GFF1010	0.28	+0.0
1,011,780	-		GFF1010	0.31	+1.5
1,011,841	+		GFF1010	0.38	-0.5
1,011,857	+		GFF1010	0.40	-0.7
1,011,859	-		GFF1010	0.41	-1.7
1,011,870	-		GFF1010	0.42	-0.5
1,011,957	+		GFF1010	0.53	+0.5
1,011,957	+		GFF1010	0.53	-0.0
1,011,965	-		GFF1010	0.53	+0.6
1,011,967	+		GFF1010	0.54	-0.7
1,012,005	-		GFF1010	0.58	-1.0
1,012,045	+		GFF1010	0.63	-2.3
1,012,053	-		GFF1010	0.64	-1.2
1,012,067	-		GFF1010	0.66	-0.1
1,012,087	+		GFF1010	0.68	+0.3
1,012,087	+		GFF1010	0.68	+1.2
1,012,090	-		GFF1010	0.69	+0.2
1,012,093	+		GFF1010	0.69	-1.2
1,012,093	+		GFF1010	0.69	-1.6
1,012,094	+		GFF1010	0.69	-1.7
1,012,111	+		GFF1010	0.71	-1.1
1,012,111	-		GFF1010	0.71	-1.4
1,012,130	+		GFF1010	0.74	+0.4
1,012,130	+		GFF1010	0.74	+0.2
1,012,130	+		GFF1010	0.74	+0.1
1,012,130	+		GFF1010	0.74	+0.0
1,012,132	+		GFF1010	0.74	+0.5
1,012,136	-		GFF1010	0.74	+0.0
1,012,136	-		GFF1010	0.74	-0.4
1,012,136	-		GFF1010	0.74	-0.2
1,012,138	-		GFF1010	0.75	+0.1
1,012,138	-		GFF1010	0.75	-0.7
1,012,138	-		GFF1010	0.75	+0.4
1,012,138	-		GFF1010	0.75	-2.2
1,012,145	-		GFF1010	0.75	-0.9
1,012,180	+		GFF1010	0.80	-1.6
1,012,187	-		GFF1010	0.81	-0.5
1,012,206	-		GFF1010	0.83	+0.5
1,012,211	-		GFF1010	0.84	-0.2
1,012,223	+		GFF1010	0.85	+0.6
1,012,223	+		GFF1010	0.85	+0.1
1,012,223	+		GFF1010	0.85	-0.2
1,012,231	-		GFF1010	0.86	-0.4
1,012,236	-		GFF1010	0.87	-0.8
1,012,236	-		GFF1010	0.87	-0.3
1,012,280	-				-1.8
1,012,301	+				-0.1
1,012,320	+				-0.3
1,012,320	+				-1.1
1,012,320	+				+0.6
1,012,320	+				+0.2
1,012,325	+				-0.5
1,012,328	-				+1.1
1,012,328	-				-1.6
1,012,328	-				+0.3
1,012,328	-				-2.7
1,012,330	+				+0.6
1,012,330	+				+0.3
1,012,330	+				-0.1
1,012,330	+				-1.2
1,012,330	+				+0.1
1,012,333	-				-2.1
1,012,333	-				-1.1
1,012,333	-				-0.8
1,012,333	-				-1.7
1,012,338	-				-0.1
1,012,338	-				-2.6
1,012,338	-				+0.6
1,012,338	-				+0.9
1,012,338	-				-1.2
1,012,342	+				+0.2
1,012,342	+				-0.5
1,012,343	-				-0.4
1,012,343	-				+0.9
1,012,350	-				-0.7
1,012,350	-				-1.4
1,012,365	+				+0.1
1,012,373	-				-1.2
1,012,378	-				-0.8
1,012,378	-				-1.6
1,012,378	-				-0.5
1,012,382	-				-1.7
1,012,383	-				-1.8
1,012,414	+				+0.4
1,012,414	+				-0.2
1,012,414	+				-1.3
1,012,414	+				-0.5
1,012,416	+				-1.1