Strain Fitness in Sphingobium sp. HT1-2 around GFF950

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF949 and GFF950 are separated by 21 nucleotidesGFF950 and GFF951 are separated by 5 nucleotidesGFF951 and GFF952 are separated by 26 nucleotides GFF949 - hypothetical protein, at 949,607 to 950,734 GFF949 GFF950 - hypothetical protein, at 950,756 to 951,049 GFF950 GFF951 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 951,055 to 951,882 GFF951 GFF952 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 951,909 to 953,174 GFF952 Position (kb) 950 951 952Strain fitness (log2 ratio) -2 -1 0 1 2at 949.855 kb on - strand, within GFF949at 949.877 kb on + strand, within GFF949at 949.919 kb on - strand, within GFF949at 949.926 kb on - strand, within GFF949at 949.946 kb on + strand, within GFF949at 949.976 kb on - strand, within GFF949at 950.021 kb on - strand, within GFF949at 950.021 kb on - strand, within GFF949at 950.023 kb on + strand, within GFF949at 950.082 kb on + strand, within GFF949at 950.145 kb on - strand, within GFF949at 950.148 kb on + strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.286 kb on + strand, within GFF949at 950.286 kb on + strand, within GFF949at 950.319 kb on + strand, within GFF949at 950.319 kb on + strand, within GFF949at 950.379 kb on - strand, within GFF949at 950.445 kb on - strand, within GFF949at 950.450 kb on - strand, within GFF949at 950.478 kb on - strand, within GFF949at 950.479 kb on - strand, within GFF949at 950.487 kb on + strand, within GFF949at 950.495 kb on - strand, within GFF949at 950.514 kb on - strand, within GFF949at 950.529 kb on - strand, within GFF949at 950.565 kb on + strand, within GFF949at 950.595 kb on - strand, within GFF949at 950.609 kb on + strand, within GFF949at 950.609 kb on - strand, within GFF949at 950.632 kb on - strandat 950.634 kb on + strandat 950.642 kb on - strandat 950.644 kb on - strandat 950.697 kb on - strandat 950.697 kb on - strandat 950.704 kb on + strandat 950.713 kb on + strandat 950.914 kb on + strand, within GFF950at 950.914 kb on + strand, within GFF950at 950.938 kb on + strand, within GFF950at 950.961 kb on + strand, within GFF950at 950.995 kb on - strand, within GFF950at 951.007 kb on - strand, within GFF950at 951.045 kb on + strandat 951.162 kb on + strand, within GFF951at 951.162 kb on + strand, within GFF951at 951.170 kb on - strand, within GFF951at 951.170 kb on - strand, within GFF951at 951.170 kb on - strand, within GFF951at 951.170 kb on - strand, within GFF951at 951.316 kb on + strand, within GFF951at 951.316 kb on + strand, within GFF951at 951.316 kb on + strand, within GFF951at 951.316 kb on + strand, within GFF951at 951.316 kb on + strand, within GFF951at 951.321 kb on + strand, within GFF951at 951.321 kb on + strand, within GFF951at 951.321 kb on + strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.326 kb on + strand, within GFF951at 951.326 kb on + strand, within GFF951at 951.329 kb on - strand, within GFF951at 951.329 kb on - strand, within GFF951at 951.334 kb on - strand, within GFF951at 951.334 kb on - strand, within GFF951at 951.339 kb on - strand, within GFF951at 951.368 kb on - strand, within GFF951at 951.442 kb on + strand, within GFF951at 951.445 kb on - strand, within GFF951at 951.475 kb on + strand, within GFF951at 951.480 kb on + strand, within GFF951at 951.561 kb on - strand, within GFF951at 951.578 kb on + strand, within GFF951at 951.617 kb on - strand, within GFF951at 951.681 kb on + strand, within GFF951at 951.751 kb on + strand, within GFF951at 951.761 kb on + strand, within GFF951at 951.835 kb on - strandat 951.857 kb on - strandat 951.876 kb on + strandat 951.876 kb on - strandat 951.877 kb on + strandat 951.878 kb on - strandat 951.970 kb on - strandat 952.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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949,855 - GFF949 0.22 +0.1
949,877 + GFF949 0.24 -0.2
949,919 - GFF949 0.28 +0.8
949,926 - GFF949 0.28 +0.3
949,946 + GFF949 0.30 +0.7
949,976 - GFF949 0.33 +1.5
950,021 - GFF949 0.37 -0.8
950,021 - GFF949 0.37 +0.1
950,023 + GFF949 0.37 +1.1
950,082 + GFF949 0.42 +1.0
950,145 - GFF949 0.48 -0.1
950,148 + GFF949 0.48 +0.6
950,193 - GFF949 0.52 -1.4
950,193 - GFF949 0.52 -0.7
950,193 - GFF949 0.52 -0.2
950,286 + GFF949 0.60 +0.1
950,286 + GFF949 0.60 +0.5
950,319 + GFF949 0.63 -0.2
950,319 + GFF949 0.63 +0.4
950,379 - GFF949 0.68 +1.1
950,445 - GFF949 0.74 -0.2
950,450 - GFF949 0.75 +0.8
950,478 - GFF949 0.77 -1.6
950,479 - GFF949 0.77 -0.4
950,487 + GFF949 0.78 +0.4
950,495 - GFF949 0.79 +0.2
950,514 - GFF949 0.80 +2.4
950,529 - GFF949 0.82 +1.0
950,565 + GFF949 0.85 -0.2
950,595 - GFF949 0.88 -1.0
950,609 + GFF949 0.89 +1.2
950,609 - GFF949 0.89 -1.7
950,632 - +0.3
950,634 + -0.0
950,642 - -0.6
950,644 - +0.4
950,697 - -2.1
950,697 - -0.9
950,704 + -0.7
950,713 + -0.4
950,914 + GFF950 0.54 -0.9
950,914 + GFF950 0.54 +2.4
950,938 + GFF950 0.62 -1.2
950,961 + GFF950 0.70 +0.3
950,995 - GFF950 0.81 -1.3
951,007 - GFF950 0.85 -2.0
951,045 + -0.2
951,162 + GFF951 0.13 +0.3
951,162 + GFF951 0.13 +1.2
951,170 - GFF951 0.14 -0.3
951,170 - GFF951 0.14 -0.2
951,170 - GFF951 0.14 -0.2
951,170 - GFF951 0.14 -0.8
951,316 + GFF951 0.32 -0.6
951,316 + GFF951 0.32 -1.4
951,316 + GFF951 0.32 +1.9
951,316 + GFF951 0.32 +0.4
951,316 + GFF951 0.32 -0.4
951,321 + GFF951 0.32 -0.9
951,321 + GFF951 0.32 -2.1
951,321 + GFF951 0.32 +0.1
951,324 - GFF951 0.32 -0.4
951,324 - GFF951 0.32 +0.7
951,324 - GFF951 0.32 -0.2
951,324 - GFF951 0.32 -1.6
951,326 + GFF951 0.33 +1.2
951,326 + GFF951 0.33 +1.3
951,329 - GFF951 0.33 +1.1
951,329 - GFF951 0.33 +1.4
951,334 - GFF951 0.34 -0.4
951,334 - GFF951 0.34 +2.6
951,339 - GFF951 0.34 -0.8
951,368 - GFF951 0.38 +0.9
951,442 + GFF951 0.47 +2.0
951,445 - GFF951 0.47 +1.9
951,475 + GFF951 0.51 -0.4
951,480 + GFF951 0.51 -0.3
951,561 - GFF951 0.61 -1.2
951,578 + GFF951 0.63 -2.7
951,617 - GFF951 0.68 +0.2
951,681 + GFF951 0.76 +0.4
951,751 + GFF951 0.84 +2.0
951,761 + GFF951 0.85 -0.5
951,835 - -0.8
951,857 - +0.1
951,876 + -0.8
951,876 - +0.2
951,877 + -1.2
951,878 - -0.1
951,970 - -2.6
952,029 + -1.2

Or see this region's nucleotide sequence