Strain Fitness in Sphingobium sp. HT1-2 around GFF947

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF945 and GFF946 overlap by 4 nucleotidesGFF946 and GFF947 overlap by 4 nucleotidesGFF947 and GFF948 are separated by 158 nucleotides GFF945 - Protein containing domains DUF404, DUF407, DUF403, at 944,523 to 947,006 GFF945 GFF946 - Protein containing transglutaminase-like domain, putative cysteine protease, at 947,003 to 947,908 GFF946 GFF947 - hypothetical protein, at 947,905 to 948,084 GFF947 GFF948 - Cytochrome P450, at 948,243 to 949,610 GFF948 Position (kb) 947 948 949Strain fitness (log2 ratio) -2 -1 0 1 2at 946.925 kb on - strandat 946.954 kb on - strandat 946.972 kb on - strandat 946.979 kb on + strandat 946.979 kb on + strandat 946.987 kb on - strandat 946.992 kb on + strandat 946.992 kb on + strandat 946.997 kb on + strandat 947.005 kb on + strandat 947.008 kb on - strandat 947.008 kb on - strandat 947.058 kb on - strandat 947.064 kb on + strandat 947.072 kb on - strandat 947.097 kb on - strand, within GFF946at 947.097 kb on - strand, within GFF946at 947.107 kb on - strand, within GFF946at 947.123 kb on - strand, within GFF946at 947.135 kb on - strand, within GFF946at 947.146 kb on + strand, within GFF946at 947.176 kb on + strand, within GFF946at 947.241 kb on + strand, within GFF946at 947.270 kb on - strand, within GFF946at 947.294 kb on - strand, within GFF946at 947.320 kb on + strand, within GFF946at 947.323 kb on - strand, within GFF946at 947.372 kb on - strand, within GFF946at 947.374 kb on - strand, within GFF946at 947.374 kb on - strand, within GFF946at 947.374 kb on - strand, within GFF946at 947.419 kb on + strand, within GFF946at 947.470 kb on + strand, within GFF946at 947.470 kb on + strand, within GFF946at 947.480 kb on + strand, within GFF946at 947.525 kb on + strand, within GFF946at 947.525 kb on + strand, within GFF946at 947.555 kb on + strand, within GFF946at 947.580 kb on - strand, within GFF946at 947.593 kb on - strand, within GFF946at 947.598 kb on - strand, within GFF946at 947.603 kb on - strand, within GFF946at 947.618 kb on - strand, within GFF946at 947.620 kb on - strand, within GFF946at 947.620 kb on - strand, within GFF946at 947.630 kb on - strand, within GFF946at 947.664 kb on - strand, within GFF946at 947.665 kb on + strand, within GFF946at 947.681 kb on + strand, within GFF946at 947.686 kb on + strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.691 kb on + strand, within GFF946at 947.694 kb on - strand, within GFF946at 947.699 kb on - strand, within GFF946at 947.704 kb on + strand, within GFF946at 947.730 kb on + strand, within GFF946at 947.730 kb on + strand, within GFF946at 947.749 kb on + strand, within GFF946at 947.750 kb on - strand, within GFF946at 947.776 kb on - strand, within GFF946at 947.794 kb on - strand, within GFF946at 947.835 kb on + strandat 947.835 kb on + strandat 947.840 kb on + strandat 947.840 kb on + strandat 947.840 kb on + strandat 947.848 kb on - strandat 947.848 kb on - strandat 947.853 kb on - strandat 947.869 kb on - strandat 947.959 kb on + strand, within GFF947at 947.959 kb on + strand, within GFF947at 947.960 kb on + strand, within GFF947at 947.960 kb on + strand, within GFF947at 947.960 kb on + strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.987 kb on + strand, within GFF947at 947.995 kb on + strand, within GFF947at 948.003 kb on - strand, within GFF947at 948.048 kb on + strand, within GFF947at 948.056 kb on - strand, within GFF947at 948.066 kb on - strand, within GFF947at 948.129 kb on + strandat 948.148 kb on + strandat 948.148 kb on + strandat 948.158 kb on + strandat 948.173 kb on + strandat 948.175 kb on + strandat 948.181 kb on - strandat 948.190 kb on + strandat 948.219 kb on - strandat 948.274 kb on + strandat 948.285 kb on + strandat 948.304 kb on + strandat 948.305 kb on - strandat 948.430 kb on + strand, within GFF948at 948.438 kb on + strand, within GFF948at 948.484 kb on - strand, within GFF948at 948.509 kb on - strand, within GFF948at 948.513 kb on - strand, within GFF948at 948.524 kb on + strand, within GFF948at 948.524 kb on + strand, within GFF948at 948.532 kb on - strand, within GFF948at 948.532 kb on - strand, within GFF948at 948.537 kb on - strand, within GFF948at 948.674 kb on - strand, within GFF948at 948.698 kb on - strand, within GFF948at 948.720 kb on - strand, within GFF948at 948.725 kb on - strand, within GFF948at 948.733 kb on + strand, within GFF948at 948.746 kb on - strand, within GFF948at 948.746 kb on - strand, within GFF948at 948.771 kb on - strand, within GFF948at 948.782 kb on + strand, within GFF948at 948.823 kb on + strand, within GFF948at 948.823 kb on + strand, within GFF948at 948.823 kb on + strand, within GFF948at 948.860 kb on - strand, within GFF948at 948.998 kb on - strand, within GFF948at 948.998 kb on - strand, within GFF948at 949.033 kb on + strand, within GFF948

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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946,925 - +1.5
946,954 - -1.2
946,972 - +0.8
946,979 + -0.9
946,979 + -0.6
946,987 - -0.1
946,992 + +1.1
946,992 + -0.6
946,997 + +0.6
947,005 + -0.8
947,008 - -0.2
947,008 - -0.4
947,058 - -1.9
947,064 + -0.6
947,072 - -1.1
947,097 - GFF946 0.10 -0.1
947,097 - GFF946 0.10 +0.8
947,107 - GFF946 0.11 +1.2
947,123 - GFF946 0.13 -0.1
947,135 - GFF946 0.15 +1.6
947,146 + GFF946 0.16 -0.4
947,176 + GFF946 0.19 -0.2
947,241 + GFF946 0.26 +0.2
947,270 - GFF946 0.29 +1.0
947,294 - GFF946 0.32 -0.6
947,320 + GFF946 0.35 +1.1
947,323 - GFF946 0.35 -1.1
947,372 - GFF946 0.41 +0.4
947,374 - GFF946 0.41 -1.2
947,374 - GFF946 0.41 -0.5
947,374 - GFF946 0.41 -1.8
947,419 + GFF946 0.46 -0.4
947,470 + GFF946 0.52 -1.4
947,470 + GFF946 0.52 +0.2
947,480 + GFF946 0.53 +0.5
947,525 + GFF946 0.58 -1.3
947,525 + GFF946 0.58 -0.2
947,555 + GFF946 0.61 +0.3
947,580 - GFF946 0.64 -2.1
947,593 - GFF946 0.65 +0.3
947,598 - GFF946 0.66 -0.5
947,603 - GFF946 0.66 -0.5
947,618 - GFF946 0.68 +1.5
947,620 - GFF946 0.68 +0.1
947,620 - GFF946 0.68 -0.3
947,630 - GFF946 0.69 -0.9
947,664 - GFF946 0.73 +0.7
947,665 + GFF946 0.73 -0.5
947,681 + GFF946 0.75 -0.2
947,686 + GFF946 0.75 +0.2
947,689 - GFF946 0.76 +0.1
947,689 - GFF946 0.76 -1.1
947,689 - GFF946 0.76 -1.5
947,689 - GFF946 0.76 +0.3
947,689 - GFF946 0.76 +2.1
947,689 - GFF946 0.76 -0.5
947,691 + GFF946 0.76 -0.8
947,694 - GFF946 0.76 +0.2
947,699 - GFF946 0.77 +0.4
947,704 + GFF946 0.77 +0.3
947,730 + GFF946 0.80 -0.8
947,730 + GFF946 0.80 -0.0
947,749 + GFF946 0.82 +0.4
947,750 - GFF946 0.82 +1.1
947,776 - GFF946 0.85 -0.8
947,794 - GFF946 0.87 -2.2
947,835 + -0.1
947,835 + +0.2
947,840 + -1.1
947,840 + -0.5
947,840 + +0.4
947,848 - -0.5
947,848 - +0.3
947,853 - -1.6
947,869 - +0.5
947,959 + GFF947 0.30 +0.2
947,959 + GFF947 0.30 -0.6
947,960 + GFF947 0.31 +0.4
947,960 + GFF947 0.31 +0.2
947,960 + GFF947 0.31 -0.3
947,968 - GFF947 0.35 -1.1
947,968 - GFF947 0.35 -0.5
947,968 - GFF947 0.35 +0.1
947,968 - GFF947 0.35 -0.1
947,968 - GFF947 0.35 +0.8
947,987 + GFF947 0.46 +0.4
947,995 + GFF947 0.50 -0.4
948,003 - GFF947 0.54 -0.8
948,048 + GFF947 0.79 -0.3
948,056 - GFF947 0.84 +0.6
948,066 - GFF947 0.89 -2.2
948,129 + -0.4
948,148 + -0.0
948,148 + -1.7
948,158 + -0.5
948,173 + -0.4
948,175 + +0.5
948,181 - -0.2
948,190 + +0.1
948,219 - +0.7
948,274 + +0.8
948,285 + -1.8
948,304 + -0.5
948,305 - +0.3
948,430 + GFF948 0.14 -1.7
948,438 + GFF948 0.14 +0.7
948,484 - GFF948 0.18 -0.9
948,509 - GFF948 0.19 +0.8
948,513 - GFF948 0.20 +0.8
948,524 + GFF948 0.21 +1.2
948,524 + GFF948 0.21 +0.4
948,532 - GFF948 0.21 -0.3
948,532 - GFF948 0.21 +0.1
948,537 - GFF948 0.21 -0.8
948,674 - GFF948 0.32 +1.2
948,698 - GFF948 0.33 +1.1
948,720 - GFF948 0.35 -0.4
948,725 - GFF948 0.35 +0.7
948,733 + GFF948 0.36 -1.5
948,746 - GFF948 0.37 +0.4
948,746 - GFF948 0.37 +0.7
948,771 - GFF948 0.39 +1.2
948,782 + GFF948 0.39 +0.4
948,823 + GFF948 0.42 +0.6
948,823 + GFF948 0.42 +2.4
948,823 + GFF948 0.42 +0.3
948,860 - GFF948 0.45 +1.0
948,998 - GFF948 0.55 +0.9
948,998 - GFF948 0.55 +1.1
949,033 + GFF948 0.58 +0.1

Or see this region's nucleotide sequence