Strain Fitness in Sphingobium sp. HT1-2 around GFF935

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
931,026	-		GFF934	0.56	-0.1
931,037	+		GFF934	0.56	-1.1
931,042	+		GFF934	0.56	+0.4
931,078	+		GFF934	0.58	-0.5
931,078	+		GFF934	0.58	+0.0
931,078	+		GFF934	0.58	-1.2
931,078	+		GFF934	0.58	-0.7
931,078	+		GFF934	0.58	+0.6
931,078	+		GFF934	0.58	+0.2
931,086	-		GFF934	0.59	-0.3
931,086	-		GFF934	0.59	+0.2
931,086	-		GFF934	0.59	-1.2
931,086	-		GFF934	0.59	-0.7
931,086	-		GFF934	0.59	+0.3
931,089	+		GFF934	0.59	-1.2
931,089	+		GFF934	0.59	-2.0
931,097	-		GFF934	0.59	-0.8
931,145	+		GFF934	0.61	+0.5
931,168	+		GFF934	0.62	-1.3
931,177	+		GFF934	0.63	+1.0
931,246	+		GFF934	0.66	+0.7
931,258	+		GFF934	0.67	-1.9
931,288	+		GFF934	0.68	+1.1
931,303	+		GFF934	0.69	+0.4
931,309	-		GFF934	0.69	+0.4
931,311	-		GFF934	0.69	-1.3
931,397	-		GFF934	0.73	+1.0
931,399	+		GFF934	0.73	+0.5
931,440	+		GFF934	0.75	+0.3
931,445	+		GFF934	0.75	-0.1
931,448	-		GFF934	0.76	+0.4
931,475	+		GFF934	0.77	+0.9
931,475	+		GFF934	0.77	-1.6
931,497	+		GFF934	0.78	+0.9
931,506	+		GFF934	0.78	+0.5
931,564	+		GFF934	0.81	-0.4
931,572	-		GFF934	0.81	-1.4
931,587	+		GFF934	0.82	+0.8
931,608	-		GFF934	0.83	+0.0
931,609	+		GFF934	0.83	-0.8
931,622	-		GFF934	0.84	+1.1
931,632	+		GFF934	0.84	+0.1
931,697	+		GFF934	0.87	+1.7
931,705	-		GFF934	0.88	+0.1
931,705	-		GFF934	0.88	+0.8
931,747	-		GFF934	0.90	+0.3
931,748	-		GFF934	0.90	+1.0
931,771	-				-0.2
931,820	-				-0.2
931,824	+				+0.5
931,824	+				-0.6
931,824	+				-1.2
931,824	+				-0.9
931,829	+				-0.0
931,832	-				-0.4
931,837	-				-0.5
931,841	+				+0.9
931,841	+				+1.7
931,849	-				+1.1
931,849	-				-0.6
931,859	+				+0.1
931,866	+				+0.6
931,897	+				+0.8
931,898	-				+0.9
931,913	+				+0.5
931,956	-				+0.1
931,956	-				+0.4
931,975	-				-0.2
931,978	-				-0.3
932,015	+				+0.6
932,028	-				-0.1
932,035	-				+0.7
932,042	+				-0.1
932,066	-		GFF935	0.10	-0.1
932,103	-		GFF935	0.17	+0.7
932,105	-		GFF935	0.18	-1.0
932,108	+		GFF935	0.18	+0.8
932,116	-		GFF935	0.20	-1.4
932,134	-		GFF935	0.23	-0.0
932,148	-		GFF935	0.26	-0.4
932,180	+		GFF935	0.31	+0.6
932,186	+		GFF935	0.33	+0.5
932,186	+		GFF935	0.33	+0.0
932,194	-		GFF935	0.34	+1.1
932,198	+		GFF935	0.35	+0.2
932,229	-		GFF935	0.41	+0.0
932,247	+		GFF935	0.44	-0.5
932,247	+		GFF935	0.44	+0.4
932,247	+		GFF935	0.44	+2.1
932,259	+		GFF935	0.46	-0.1
932,272	-		GFF935	0.48	-0.6
932,294	-		GFF935	0.52	+0.5
932,296	+		GFF935	0.53	+2.1
932,468	+		GFF935	0.85	+1.4
932,471	+		GFF935	0.85	-0.4
932,479	-		GFF935	0.87	+0.2
932,479	-		GFF935	0.87	-0.7
932,499	+				+0.4
932,499	+				-0.2
932,504	+				-1.6
932,518	+				-0.1
932,518	+				-1.3
932,519	+				-0.1
932,519	+				+0.5
932,519	+				-0.2
932,519	+				+0.0
932,527	-				-1.5
932,527	-				-0.3
932,527	-				+0.3
932,527	-				+0.5
932,529	+				+0.3
932,529	+				+0.9
932,529	+				-0.8
932,537	-				+0.3
932,537	-				+0.1
932,537	-				-0.1
932,537	-				+0.6
932,537	-				+0.7
932,537	-				-0.5
932,552	+				-0.9
932,602	-				-0.5
932,668	-				+0.4
932,703	+				+0.6
932,713	+				-0.7
932,713	+				-1.8
932,713	+				-2.7
932,713	+				-0.4
932,713	+				+0.2
932,713	+				+0.8
932,713	+				-1.5
932,721	-				+0.2
932,721	-				+0.2
932,721	-				-1.0
932,762	+		GFF936	0.14	-0.2
932,832	+		GFF936	0.30	-0.9
932,832	+		GFF936	0.30	+0.5
932,832	+		GFF936	0.30	+0.5
932,832	+		GFF936	0.30	-0.0
932,832	+		GFF936	0.30	+0.1
932,832	+		GFF936	0.30	-0.3
932,840	-		GFF936	0.32	+1.7
932,854	-		GFF936	0.35	-0.7
932,863	+		GFF936	0.37	-0.7
932,864	-		GFF936	0.37	-0.1
932,864	-		GFF936	0.37	-1.7
932,864	-		GFF936	0.37	+0.1
932,871	+		GFF936	0.39	-1.1
932,879	-		GFF936	0.41	-1.2
932,889	+		GFF936	0.43	+1.9
932,890	+		GFF936	0.43	-0.4
932,890	+		GFF936	0.43	+0.8
932,890	+		GFF936	0.43	-0.1
932,890	+		GFF936	0.43	+1.5
932,892	+		GFF936	0.44	-1.7
932,897	-		GFF936	0.45	-0.8
932,898	-		GFF936	0.45	-0.7
932,898	-		GFF936	0.45	-1.1
932,898	-		GFF936	0.45	+0.4
932,902	-		GFF936	0.46	-1.0
932,902	-		GFF936	0.46	+1.6
932,920	+		GFF936	0.50	+1.7
932,928	-		GFF936	0.52	+0.5
932,928	-		GFF936	0.52	+0.9
932,929	-		GFF936	0.52	+0.9
932,953	+		GFF936	0.57	+1.4
932,964	-		GFF936	0.60	-1.7
932,971	-		GFF936	0.61	+1.6
932,987	-		GFF936	0.65	+0.6
933,012	-		GFF936	0.71	+1.1
933,045	+		GFF936	0.78	-0.7
933,045	+		GFF936	0.78	-0.5
933,047	-		GFF936	0.79	-0.2
933,071	+		GFF936	0.84	+0.1
933,071	+		GFF936	0.84	+1.1
933,081	+		GFF936	0.86	-1.6
933,081	+		GFF936	0.86	+0.4
933,081	+		GFF936	0.86	+1.0
933,089	-		GFF936	0.88	-0.7
933,094	+		GFF936	0.89	+1.3
933,094	-		GFF936	0.89	-0.2
933,118	+				-1.6
933,123	+				+1.0
933,155	+				+0.4
933,161	-				+1.8
933,169	+				-0.2
933,179	+				+0.6
933,179	+				+0.5
933,179	+				+0.2
933,187	-				-0.5
933,187	-				-1.1
933,187	-				-0.1
933,210	-				+0.0
933,225	+				+0.1
933,233	-				+0.2
933,233	-				-2.4
933,238	-				-1.1
933,238	-				-1.0
933,259	-				-1.3
933,259	-				+0.9
933,265	+				-0.0
933,269	-				+1.4
933,319	+				+0.9
933,319	+				-0.7
933,327	-				-0.2
933,354	+		GFF937	0.11	+0.3
933,354	+		GFF937	0.11	-0.3
933,381	+		GFF937	0.15	+0.5
933,389	-		GFF937	0.16	+0.9
933,394	-		GFF937	0.17	-0.7
933,428	+		GFF937	0.22	-0.4
933,436	-		GFF937	0.23	+0.6
933,448	-		GFF937	0.25	+1.5
933,471	+		GFF937	0.28	-0.9
933,471	+		GFF937	0.28	-0.6
933,479	-		GFF937	0.30	+0.4
933,479	-		GFF937	0.30	+0.0
933,484	-		GFF937	0.30	-0.1
933,484	-		GFF937	0.30	-2.5
933,515	-		GFF937	0.35	-2.6
933,517	+		GFF937	0.35	-0.3
933,523	+		GFF937	0.36	+0.2
933,531	-		GFF937	0.37	-0.1
933,541	+		GFF937	0.39	+0.3
933,541	+		GFF937	0.39	+0.1