Strain Fitness in Sphingobium sp. HT1-2 around GFF88

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF87 and GFF88 are separated by 7 nucleotidesGFF88 and GFF89 are separated by 85 nucleotidesGFF89 and GFF90 are separated by 150 nucleotides GFF87 - Kup system potassium uptake protein, at 75,144 to 77,066 GFF87 GFF88 - Radical SAM domain protein, at 77,074 to 78,141 GFF88 GFF89 - hypothetical protein, at 78,227 to 78,739 GFF89 GFF90 - Molybdenum cofactor biosynthesis protein MoaB, at 78,890 to 79,417 GFF90 Position (kb) 77 78 79Strain fitness (log2 ratio) -3 -2 -1 0 1at 77.094 kb on - strandat 77.104 kb on - strandat 77.105 kb on + strandat 77.110 kb on + strandat 77.110 kb on + strandat 77.110 kb on + strandat 77.113 kb on - strandat 77.113 kb on - strandat 77.115 kb on + strandat 77.118 kb on - strandat 77.118 kb on - strandat 77.118 kb on - strandat 77.131 kb on + strandat 77.147 kb on + strandat 77.148 kb on + strandat 77.155 kb on - strandat 77.170 kb on + strandat 77.185 kb on + strand, within GFF88at 77.185 kb on + strand, within GFF88at 77.185 kb on + strand, within GFF88at 77.185 kb on + strand, within GFF88at 77.185 kb on + strand, within GFF88at 77.190 kb on + strand, within GFF88at 77.193 kb on - strand, within GFF88at 77.193 kb on - strand, within GFF88at 77.193 kb on - strand, within GFF88at 77.193 kb on - strand, within GFF88at 77.198 kb on - strand, within GFF88at 77.198 kb on - strand, within GFF88at 77.198 kb on - strand, within GFF88at 77.198 kb on - strand, within GFF88at 77.202 kb on + strand, within GFF88at 77.252 kb on + strand, within GFF88at 77.259 kb on + strand, within GFF88at 77.267 kb on - strand, within GFF88at 77.297 kb on + strand, within GFF88at 77.297 kb on + strand, within GFF88at 77.305 kb on - strand, within GFF88at 77.306 kb on - strand, within GFF88at 77.318 kb on + strand, within GFF88at 77.318 kb on + strand, within GFF88at 77.326 kb on - strand, within GFF88at 77.362 kb on + strand, within GFF88at 77.386 kb on - strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.547 kb on + strand, within GFF88at 77.607 kb on - strand, within GFF88at 77.616 kb on + strand, within GFF88at 77.616 kb on + strand, within GFF88at 77.616 kb on + strand, within GFF88at 77.631 kb on + strand, within GFF88at 77.708 kb on + strand, within GFF88at 77.708 kb on + strand, within GFF88at 77.716 kb on - strand, within GFF88at 77.738 kb on - strand, within GFF88at 77.763 kb on + strand, within GFF88at 77.771 kb on + strand, within GFF88at 77.776 kb on - strand, within GFF88at 77.793 kb on - strand, within GFF88at 77.797 kb on + strand, within GFF88at 77.800 kb on + strand, within GFF88at 77.805 kb on - strand, within GFF88at 77.862 kb on + strand, within GFF88at 77.862 kb on + strand, within GFF88at 77.862 kb on + strand, within GFF88at 77.862 kb on + strand, within GFF88at 77.870 kb on - strand, within GFF88at 77.870 kb on - strand, within GFF88at 77.871 kb on - strand, within GFF88at 77.899 kb on - strand, within GFF88at 77.901 kb on - strand, within GFF88at 77.905 kb on + strand, within GFF88at 77.913 kb on - strand, within GFF88at 77.937 kb on + strand, within GFF88at 77.981 kb on - strand, within GFF88at 77.981 kb on - strand, within GFF88at 77.990 kb on - strand, within GFF88at 78.024 kb on - strand, within GFF88at 78.047 kb on + strandat 78.047 kb on - strandat 78.047 kb on - strandat 78.084 kb on + strandat 78.084 kb on + strandat 78.092 kb on - strandat 78.106 kb on + strandat 78.111 kb on + strandat 78.114 kb on - strandat 78.114 kb on - strandat 78.119 kb on - strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.204 kb on - strandat 78.213 kb on - strandat 78.213 kb on - strandat 78.213 kb on - strandat 78.223 kb on + strandat 78.248 kb on - strandat 78.248 kb on - strandat 78.251 kb on + strandat 78.259 kb on - strandat 78.290 kb on + strand, within GFF89at 78.298 kb on + strand, within GFF89at 78.311 kb on + strand, within GFF89at 78.311 kb on + strand, within GFF89at 78.316 kb on + strand, within GFF89at 78.319 kb on - strand, within GFF89at 78.319 kb on - strand, within GFF89at 78.319 kb on - strand, within GFF89at 78.329 kb on - strand, within GFF89at 78.331 kb on + strand, within GFF89at 78.351 kb on - strand, within GFF89at 78.365 kb on + strand, within GFF89at 78.365 kb on + strand, within GFF89at 78.373 kb on - strand, within GFF89at 78.373 kb on - strand, within GFF89at 78.374 kb on - strand, within GFF89at 78.388 kb on + strand, within GFF89at 78.418 kb on - strand, within GFF89at 78.469 kb on + strand, within GFF89at 78.546 kb on + strand, within GFF89at 78.546 kb on + strand, within GFF89at 78.554 kb on - strand, within GFF89at 78.554 kb on - strand, within GFF89at 78.556 kb on + strand, within GFF89at 78.556 kb on + strand, within GFF89at 78.577 kb on - strand, within GFF89at 78.589 kb on + strand, within GFF89at 78.597 kb on + strand, within GFF89at 78.602 kb on + strand, within GFF89at 78.609 kb on + strand, within GFF89at 78.609 kb on + strand, within GFF89at 78.609 kb on + strand, within GFF89at 78.610 kb on - strand, within GFF89at 78.616 kb on + strand, within GFF89at 78.616 kb on + strand, within GFF89at 78.616 kb on + strand, within GFF89at 78.624 kb on - strand, within GFF89at 78.633 kb on + strand, within GFF89at 78.633 kb on + strand, within GFF89at 78.641 kb on - strand, within GFF89at 78.667 kb on - strand, within GFF89at 78.669 kb on + strand, within GFF89at 78.685 kb on - strand, within GFF89at 78.685 kb on - strand, within GFF89at 78.717 kb on - strandat 78.734 kb on + strandat 78.742 kb on - strandat 78.749 kb on - strandat 78.753 kb on - strandat 78.753 kb on - strandat 78.755 kb on + strandat 78.839 kb on + strandat 78.955 kb on - strand, within GFF90at 78.978 kb on + strand, within GFF90at 78.979 kb on - strand, within GFF90at 78.979 kb on - strand, within GFF90at 78.998 kb on - strand, within GFF90at 79.012 kb on - strand, within GFF90at 79.015 kb on + strand, within GFF90at 79.016 kb on + strand, within GFF90at 79.016 kb on + strand, within GFF90at 79.023 kb on - strand, within GFF90at 79.038 kb on - strand, within GFF90at 79.078 kb on + strand, within GFF90at 79.078 kb on + strand, within GFF90at 79.086 kb on - strand, within GFF90at 79.086 kb on - strand, within GFF90at 79.091 kb on - strand, within GFF90at 79.094 kb on + strand, within GFF90at 79.105 kb on - strand, within GFF90at 79.127 kb on + strand, within GFF90at 79.127 kb on + strand, within GFF90at 79.127 kb on + strand, within GFF90at 79.127 kb on + strand, within GFF90at 79.130 kb on - strand, within GFF90at 79.134 kb on + strand, within GFF90at 79.135 kb on - strand, within GFF90at 79.135 kb on - strand, within GFF90at 79.139 kb on + strand, within GFF90

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
77,094 - +0.8
77,104 - +0.1
77,105 + -1.0
77,110 + +1.0
77,110 + -0.3
77,110 + +1.0
77,113 - +0.7
77,113 - -1.4
77,115 + +0.6
77,118 - -0.9
77,118 - -0.8
77,118 - -1.2
77,131 + -1.7
77,147 + +0.7
77,148 + -1.0
77,155 - -0.0
77,170 + +1.0
77,185 + GFF88 0.10 -1.0
77,185 + GFF88 0.10 -0.2
77,185 + GFF88 0.10 -1.3
77,185 + GFF88 0.10 -0.5
77,185 + GFF88 0.10 +0.5
77,190 + GFF88 0.11 +0.9
77,193 - GFF88 0.11 +0.9
77,193 - GFF88 0.11 -0.4
77,193 - GFF88 0.11 -0.6
77,193 - GFF88 0.11 -0.0
77,198 - GFF88 0.12 -0.6
77,198 - GFF88 0.12 -0.1
77,198 - GFF88 0.12 -2.2
77,198 - GFF88 0.12 -0.7
77,202 + GFF88 0.12 +1.5
77,252 + GFF88 0.17 -1.0
77,259 + GFF88 0.17 +0.2
77,267 - GFF88 0.18 -0.2
77,297 + GFF88 0.21 -0.4
77,297 + GFF88 0.21 -0.2
77,305 - GFF88 0.22 +1.5
77,306 - GFF88 0.22 -1.7
77,318 + GFF88 0.23 +0.1
77,318 + GFF88 0.23 -1.4
77,326 - GFF88 0.24 -2.5
77,362 + GFF88 0.27 +0.6
77,386 - GFF88 0.29 +1.5
77,529 + GFF88 0.43 +0.1
77,529 + GFF88 0.43 -1.3
77,529 + GFF88 0.43 -0.1
77,529 + GFF88 0.43 +0.8
77,529 + GFF88 0.43 +0.4
77,529 + GFF88 0.43 +0.0
77,529 + GFF88 0.43 -0.2
77,529 + GFF88 0.43 +1.1
77,529 + GFF88 0.43 -0.8
77,529 + GFF88 0.43 -2.6
77,537 - GFF88 0.43 -1.5
77,537 - GFF88 0.43 -1.6
77,537 - GFF88 0.43 -1.2
77,537 - GFF88 0.43 +0.1
77,537 - GFF88 0.43 -0.2
77,537 - GFF88 0.43 +0.5
77,547 + GFF88 0.44 +0.7
77,607 - GFF88 0.50 +0.3
77,616 + GFF88 0.51 -0.9
77,616 + GFF88 0.51 +0.4
77,616 + GFF88 0.51 -1.7
77,631 + GFF88 0.52 -1.2
77,708 + GFF88 0.59 -0.2
77,708 + GFF88 0.59 +1.0
77,716 - GFF88 0.60 -2.2
77,738 - GFF88 0.62 -0.8
77,763 + GFF88 0.65 -2.0
77,771 + GFF88 0.65 -1.2
77,776 - GFF88 0.66 +0.5
77,793 - GFF88 0.67 +0.4
77,797 + GFF88 0.68 -0.1
77,800 + GFF88 0.68 +0.7
77,805 - GFF88 0.68 +0.1
77,862 + GFF88 0.74 -2.1
77,862 + GFF88 0.74 -2.7
77,862 + GFF88 0.74 +0.9
77,862 + GFF88 0.74 -1.2
77,870 - GFF88 0.75 +0.5
77,870 - GFF88 0.75 -0.8
77,871 - GFF88 0.75 -1.9
77,899 - GFF88 0.77 -3.1
77,901 - GFF88 0.77 +0.7
77,905 + GFF88 0.78 +0.0
77,913 - GFF88 0.79 -1.1
77,937 + GFF88 0.81 -0.9
77,981 - GFF88 0.85 -2.2
77,981 - GFF88 0.85 -0.8
77,990 - GFF88 0.86 -1.6
78,024 - GFF88 0.89 -0.7
78,047 + -0.3
78,047 - -1.6
78,047 - +0.1
78,084 + -1.2
78,084 + +0.2
78,092 - -1.2
78,106 + -1.5
78,111 + +1.2
78,114 - -0.6
78,114 - -1.4
78,119 - -1.6
78,191 + +0.7
78,191 + -0.1
78,204 - -1.4
78,213 - -0.3
78,213 - -1.6
78,213 - +0.3
78,223 + -2.6
78,248 - +0.2
78,248 - +0.7
78,251 + +0.5
78,259 - -0.7
78,290 + GFF89 0.12 -0.2
78,298 + GFF89 0.14 -0.7
78,311 + GFF89 0.16 -0.3
78,311 + GFF89 0.16 +0.1
78,316 + GFF89 0.17 +0.6
78,319 - GFF89 0.18 -0.8
78,319 - GFF89 0.18 -1.2
78,319 - GFF89 0.18 -1.0
78,329 - GFF89 0.20 -0.4
78,331 + GFF89 0.20 -1.1
78,351 - GFF89 0.24 +0.8
78,365 + GFF89 0.27 -0.3
78,365 + GFF89 0.27 +0.7
78,373 - GFF89 0.28 -1.5
78,373 - GFF89 0.28 -0.2
78,374 - GFF89 0.29 -0.4
78,388 + GFF89 0.31 -0.7
78,418 - GFF89 0.37 +0.4
78,469 + GFF89 0.47 -0.1
78,546 + GFF89 0.62 +0.4
78,546 + GFF89 0.62 -0.3
78,554 - GFF89 0.64 -0.1
78,554 - GFF89 0.64 -0.2
78,556 + GFF89 0.64 +0.7
78,556 + GFF89 0.64 -1.1
78,577 - GFF89 0.68 -2.2
78,589 + GFF89 0.71 +0.2
78,597 + GFF89 0.72 +0.4
78,602 + GFF89 0.73 -0.3
78,609 + GFF89 0.74 +0.3
78,609 + GFF89 0.74 -0.3
78,609 + GFF89 0.74 +0.7
78,610 - GFF89 0.75 +0.5
78,616 + GFF89 0.76 -1.3
78,616 + GFF89 0.76 -0.8
78,616 + GFF89 0.76 +1.3
78,624 - GFF89 0.77 -2.0
78,633 + GFF89 0.79 -1.4
78,633 + GFF89 0.79 -1.4
78,641 - GFF89 0.81 +1.0
78,667 - GFF89 0.86 -0.2
78,669 + GFF89 0.86 +0.8
78,685 - GFF89 0.89 -0.7
78,685 - GFF89 0.89 +1.3
78,717 - -0.7
78,734 + +0.7
78,742 - +0.9
78,749 - +0.4
78,753 - -0.2
78,753 - -0.6
78,755 + -2.2
78,839 + +0.1
78,955 - GFF90 0.12 +1.1
78,978 + GFF90 0.17 -0.9
78,979 - GFF90 0.17 -1.1
78,979 - GFF90 0.17 -0.5
78,998 - GFF90 0.20 +0.7
79,012 - GFF90 0.23 -1.2
79,015 + GFF90 0.24 +0.1
79,016 + GFF90 0.24 +0.1
79,016 + GFF90 0.24 +0.8
79,023 - GFF90 0.25 +0.7
79,038 - GFF90 0.28 -1.1
79,078 + GFF90 0.36 +1.5
79,078 + GFF90 0.36 -2.3
79,086 - GFF90 0.37 -2.9
79,086 - GFF90 0.37 -0.8
79,091 - GFF90 0.38 +0.1
79,094 + GFF90 0.39 +0.6
79,105 - GFF90 0.41 +0.9
79,127 + GFF90 0.45 -0.2
79,127 + GFF90 0.45 -1.2
79,127 + GFF90 0.45 -0.6
79,127 + GFF90 0.45 -0.5
79,130 - GFF90 0.45 +0.4
79,134 + GFF90 0.46 +0.1
79,135 - GFF90 0.46 -0.4
79,135 - GFF90 0.46 +0.5
79,139 + GFF90 0.47 -0.1

Or see this region's nucleotide sequence