Strain Fitness in Sphingobium sp. HT1-2 around GFF863

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
848,340	+		GFF861	0.54	-0.2
848,344	-		GFF861	0.54	+0.8
848,345	+		GFF861	0.54	-0.2
848,345	+		GFF861	0.54	+0.1
848,348	-		GFF861	0.55	+0.2
848,348	-		GFF861	0.55	+0.2
848,352	+		GFF861	0.55	+0.3
848,362	+		GFF861	0.56	+0.8
848,368	+		GFF861	0.57	+0.7
848,372	+		GFF861	0.57	-0.0
848,385	+		GFF861	0.58	-0.3
848,385	+		GFF861	0.58	-0.1
848,390	+		GFF861	0.59	+0.6
848,393	-		GFF861	0.59	-0.8
848,393	-		GFF861	0.59	-1.4
848,393	-		GFF861	0.59	+0.0
848,416	-		GFF861	0.61	-2.3
848,431	+		GFF861	0.62	+0.7
848,455	+		GFF861	0.65	-0.4
848,463	-		GFF861	0.65	-0.2
848,472	+		GFF861	0.66	-0.7
848,472	+		GFF861	0.66	-0.3
848,472	+		GFF861	0.66	+0.4
848,473	-		GFF861	0.66	-0.8
848,480	-		GFF861	0.67	+1.6
848,480	-		GFF861	0.67	-0.4
848,480	-		GFF861	0.67	+0.1
848,514	-		GFF861	0.70	-0.3
848,515	+		GFF861	0.70	-0.4
848,523	-		GFF861	0.71	+0.1
848,530	-		GFF861	0.72	-0.1
848,543	-		GFF861	0.73	-0.8
848,545	-		GFF861	0.73	-1.5
848,569	-		GFF861	0.75	-2.1
848,587	-		GFF861	0.77	-0.3
848,588	-		GFF861	0.77	+0.7
848,632	-		GFF861	0.81	-0.4
848,632	-		GFF861	0.81	-1.3
848,661	+		GFF861	0.84	-0.7
848,662	+		GFF861	0.84	-0.8
848,668	+		GFF861	0.85	-2.0
848,668	+		GFF861	0.85	-0.6
848,668	+		GFF861	0.85	-1.2
848,668	+		GFF861	0.85	+0.2
848,668	+		GFF861	0.85	-0.5
848,676	-		GFF861	0.85	+0.3
848,690	+		GFF861	0.87	+1.1
848,691	-		GFF861	0.87	-1.7
848,691	-		GFF861	0.87	-1.0
848,698	+		GFF861	0.88	+0.6
848,698	+		GFF861	0.88	-1.0
848,699	+		GFF861	0.88	+0.2
848,699	+		GFF861	0.88	+0.9
848,699	+		GFF861	0.88	-0.5
848,701	-		GFF861	0.88	+0.6
848,706	+		GFF861	0.88	-0.4
848,706	+		GFF861	0.88	+0.2
848,706	+		GFF861	0.88	+0.3
848,706	+		GFF861	0.88	-0.2
848,706	+		GFF861	0.88	-0.5
848,706	+		GFF861	0.88	-0.3
848,706	+		GFF861	0.88	-1.1
848,706	+		GFF861	0.88	-1.2
848,706	+		GFF861	0.88	+0.7
848,706	+		GFF861	0.88	-0.4
848,706	+		GFF861	0.88	+1.0
848,706	+		GFF861	0.88	-1.2
848,706	+		GFF861	0.88	+0.6
848,706	+		GFF861	0.88	+0.1
848,706	+		GFF861	0.88	-0.7
848,707	-		GFF861	0.88	-0.2
848,708	+		GFF861	0.88	+0.5
848,708	+		GFF861	0.88	-0.4
848,708	+		GFF861	0.88	+0.3
848,708	+		GFF861	0.88	-0.7
848,708	+		GFF861	0.88	-0.7
848,708	+		GFF861	0.88	+0.4
848,714	-		GFF861	0.89	-0.9
848,714	-		GFF861	0.89	-0.1
848,714	-		GFF861	0.89	-0.6
848,714	-		GFF861	0.89	-0.3
848,714	-		GFF861	0.89	-0.8
848,714	-		GFF861	0.89	-0.0
848,714	-		GFF861	0.89	+1.0
848,714	-		GFF861	0.89	+0.1
848,714	-		GFF861	0.89	-0.4
848,714	-		GFF861	0.89	+0.3
848,714	-		GFF861	0.89	+0.2
848,716	-		GFF861	0.89	+0.5
848,716	-		GFF861	0.89	+0.4
848,716	-		GFF861	0.89	-1.2
848,722	+		GFF861	0.90	-1.0
848,722	+		GFF861	0.90	-0.7
848,752	-				-1.6
848,753	+				-0.8
848,769	-				+0.8
848,769	-				-0.0
848,772	+				+1.5
848,772	+				+0.1
848,772	+				-0.2
848,772	+				-2.0
848,772	+				-0.2
848,772	+				-1.9
848,772	+				-0.4
848,772	+				-0.1
848,772	+				+0.4
848,772	+				+0.8
848,772	+				+0.0
848,772	+				-0.6
848,772	+				+0.3
848,772	+				+0.3
848,772	+				-0.3
848,772	+				-1.8
848,780	-				-0.2
848,780	-				-1.3
848,780	-				+0.6
848,780	-				-0.4
848,780	-				-1.2
848,780	-				-0.9
848,780	-				-0.1
848,780	-				+1.0
848,784	+				-0.5
848,790	-				-0.3
848,847	-				-2.1
848,847	-				+0.1
848,849	-				-1.5
848,874	+		GFF862	0.13	-1.6
848,882	-		GFF862	0.15	+1.0
848,884	+		GFF862	0.15	+1.6
848,885	+		GFF862	0.16	-0.2
848,892	-		GFF862	0.18	-2.2
848,892	-		GFF862	0.18	+1.2
848,957	+		GFF862	0.35	-1.0
848,967	-		GFF862	0.38	-0.5
848,979	+		GFF862	0.41	-0.2
848,981	-		GFF862	0.42	-1.3
848,982	+		GFF862	0.42	+0.4
848,987	-		GFF862	0.43	-1.1
849,034	+		GFF862	0.56	+0.4
849,039	+		GFF862	0.57	-1.2
849,045	+		GFF862	0.59	+0.4
849,047	-		GFF862	0.60	+1.2
849,047	-		GFF862	0.60	+0.5
849,047	-		GFF862	0.60	-0.0
849,075	-		GFF862	0.67	+0.1
849,095	+		GFF862	0.73	-0.4
849,103	-		GFF862	0.75	-0.1
849,103	-		GFF862	0.75	-1.5
849,119	+		GFF862	0.79	+0.2
849,127	-		GFF862	0.81	-1.4
849,127	-		GFF862	0.81	-0.6
849,133	-		GFF862	0.83	-1.1
849,144	-		GFF862	0.86	-1.6
849,149	-		GFF862	0.87	-0.0
849,151	+		GFF862	0.88	-2.0
849,151	+		GFF862	0.88	+0.4
849,151	+		GFF862	0.88	-0.7
849,151	+		GFF862	0.88	-0.4
849,151	+		GFF862	0.88	-1.7
849,151	+		GFF862	0.88	+1.1
849,151	+		GFF862	0.88	+1.3
849,151	+		GFF862	0.88	-0.5
849,151	+		GFF862	0.88	-0.0
849,159	-				-0.6
849,159	-				+0.1
849,159	-				-0.9
849,159	-				+0.2
849,159	-				-0.6
849,159	-				-0.1
849,159	-				-1.8
849,159	-				-0.6
849,159	-				+1.3
849,159	-				+0.6
849,159	-				-2.2
849,159	-				-0.4
849,177	+				-0.2
849,177	+				-0.7
849,185	-				+0.5
849,190	+				-1.9
849,192	+				-0.9
849,192	+				+2.0
849,192	+				-0.6
849,192	+				-1.3
849,192	+				+0.6
849,192	-				-0.7
849,199	+				+0.4
849,200	-				+1.2
849,207	-				+1.4
849,214	+				+0.5
849,224	+				+0.3
849,279	-				+0.8
849,296	+				+0.3
849,352	+				-2.1
849,381	+				+1.7
849,414	-				-1.2
849,433	-				+0.2
849,463	-		GFF863	0.12	+0.4
849,504	+		GFF863	0.16	+0.3
849,504	+		GFF863	0.16	-2.0
849,504	+		GFF863	0.16	+0.3
849,512	-		GFF863	0.17	+1.1
849,512	-		GFF863	0.17	-1.4
849,512	-		GFF863	0.17	-0.4
849,512	-		GFF863	0.17	+0.5
849,512	-		GFF863	0.17	-0.3
849,512	-		GFF863	0.17	-1.9
849,512	-		GFF863	0.17	-1.6
849,512	-		GFF863	0.17	+0.1
849,512	-		GFF863	0.17	+0.3
849,512	-		GFF863	0.17	+0.8
849,512	-		GFF863	0.17	-1.7
849,534	-		GFF863	0.19	-0.2
849,537	-		GFF863	0.19	+0.1
849,570	-		GFF863	0.22	+0.3
849,570	-		GFF863	0.22	+0.9
849,577	-		GFF863	0.22	-0.6
849,587	+		GFF863	0.23	-3.1
849,632	+		GFF863	0.27	+0.4
849,671	-		GFF863	0.31	-2.0
849,673	+		GFF863	0.31	-0.0
849,731	+		GFF863	0.36	-2.1
849,731	+		GFF863	0.36	-0.2
849,732	+		GFF863	0.36	-0.0
849,739	-		GFF863	0.37	+0.1
849,757	+		GFF863	0.38	-0.6
849,757	+		GFF863	0.38	-1.6
849,765	-		GFF863	0.39	-0.4
849,772	+		GFF863	0.39	-0.9
849,802	+		GFF863	0.42	-1.3
849,802	+		GFF863	0.42	-1.2
849,802	+		GFF863	0.42	-0.4
849,802	+		GFF863	0.42	-0.2
849,810	-		GFF863	0.43	+0.9
849,810	-		GFF863	0.43	-1.7
849,810	-		GFF863	0.43	-0.3
849,810	-		GFF863	0.43	-0.7
849,810	-		GFF863	0.43	-0.5
849,810	-		GFF863	0.43	-0.4
849,817	+		GFF863	0.43	+0.7
849,825	-		GFF863	0.44	+0.2
849,835	-		GFF863	0.45	-0.6
849,864	+		GFF863	0.48	-2.9
849,890	+		GFF863	0.50	-0.3
849,890	+		GFF863	0.50	+0.5
849,890	+		GFF863	0.50	-0.2
849,890	+		GFF863	0.50	-0.7
849,890	+		GFF863	0.50	-2.1
849,890	+		GFF863	0.50	-0.3
849,898	-		GFF863	0.51	-0.2
849,898	-		GFF863	0.51	+0.8
849,900	+		GFF863	0.51	+0.4
849,905	+		GFF863	0.51	+1.1
849,905	+		GFF863	0.51	-2.7
849,905	+		GFF863	0.51	+0.1
849,905	+		GFF863	0.51	+0.6
849,905	+		GFF863	0.51	-1.4
849,908	-		GFF863	0.51	+0.4
849,913	-		GFF863	0.52	-0.8
849,913	-		GFF863	0.52	+0.1
849,918	+		GFF863	0.52	-0.1
849,926	-		GFF863	0.53	-0.2
849,926	-		GFF863	0.53	-0.3
849,926	-		GFF863	0.53	-0.5
849,942	+		GFF863	0.54	-1.2
849,942	+		GFF863	0.54	+0.2
849,942	+		GFF863	0.54	+0.2
849,942	+		GFF863	0.54	-0.0
849,950	-		GFF863	0.55	-0.8
849,950	-		GFF863	0.55	+0.3
849,950	-		GFF863	0.55	-1.4
849,950	-		GFF863	0.55	+1.1
849,950	-		GFF863	0.55	+0.2
849,950	-		GFF863	0.55	-1.1
849,952	+		GFF863	0.55	+1.3
849,963	+		GFF863	0.56	-1.2
849,963	+		GFF863	0.56	-1.2
849,995	+		GFF863	0.59	-0.9
849,998	-		GFF863	0.59	-1.7
850,026	-		GFF863	0.62	+0.5
850,038	+		GFF863	0.63	+0.7
850,051	-		GFF863	0.64	-0.9
850,056	-		GFF863	0.64	+0.9
850,067	-		GFF863	0.65	+1.4
850,078	+		GFF863	0.66	+0.5
850,078	+		GFF863	0.66	-0.6
850,078	+		GFF863	0.66	+0.1
850,078	+		GFF863	0.66	-0.7
850,078	+		GFF863	0.66	+1.7
850,078	+		GFF863	0.66	+1.6
850,078	+		GFF863	0.66	-0.6
850,078	+		GFF863	0.66	+0.3
850,078	+		GFF863	0.66	-0.9
850,078	+		GFF863	0.66	-1.0
850,078	+		GFF863	0.66	-0.2
850,079	-		GFF863	0.66	+0.3
850,083	+		GFF863	0.67	+0.6
850,086	-		GFF863	0.67	-0.8
850,086	-		GFF863	0.67	-1.4
850,086	-		GFF863	0.67	-0.2
850,086	-		GFF863	0.67	-0.3
850,086	-		GFF863	0.67	-0.7
850,086	-		GFF863	0.67	-1.8
850,091	-		GFF863	0.68	-1.4
850,092	-		GFF863	0.68	-0.5
850,093	+		GFF863	0.68	-1.0
850,116	+		GFF863	0.70	-1.2
850,136	+		GFF863	0.72	+1.2
850,137	-		GFF863	0.72	+1.6
850,165	+		GFF863	0.74	-0.5
850,169	+		GFF863	0.74	-1.4
850,173	+		GFF863	0.75	+0.0
850,179	+		GFF863	0.75	-0.4
850,179	-		GFF863	0.75	+0.7
850,179	-		GFF863	0.75	+0.8
850,181	-		GFF863	0.75	-0.4
850,181	-		GFF863	0.75	+0.5
850,184	+		GFF863	0.76	-0.5
850,186	-		GFF863	0.76	+0.0
850,189	+		GFF863	0.76	+1.2
850,189	+		GFF863	0.76	-1.1
850,189	+		GFF863	0.76	+0.9
850,189	+		GFF863	0.76	-2.1
850,191	-		GFF863	0.76	+1.0
850,192	-		GFF863	0.76	-0.7
850,194	+		GFF863	0.77	+1.0
850,197	-		GFF863	0.77	-0.0
850,197	-		GFF863	0.77	+0.3
850,197	-		GFF863	0.77	+0.1
850,202	-		GFF863	0.77	-2.0
850,202	-		GFF863	0.77	-0.0
850,224	+		GFF863	0.79	+0.3
850,230	+		GFF863	0.80	-0.2
850,234	-		GFF863	0.80	+0.3
850,238	-		GFF863	0.80	-1.6
850,243	+		GFF863	0.81	-0.2
850,243	+		GFF863	0.81	-1.4
850,245	+		GFF863	0.81	-0.6
850,251	-		GFF863	0.82	-0.3
850,251	-		GFF863	0.82	-0.3
850,252	-		GFF863	0.82	+0.7
850,252	-		GFF863	0.82	+0.8
850,253	-		GFF863	0.82	-0.5
850,271	+		GFF863	0.83	+0.1
850,291	-		GFF863	0.85	+0.2
850,297	-		GFF863	0.86	-0.8
850,315	+		GFF863	0.87	-1.1
850,324	-		GFF863	0.88	-0.8
850,336	+		GFF863	0.89	-0.9
850,344	-		GFF863	0.90	-0.5
850,379	-				+1.3
850,385	+				-0.8
850,385	+				+1.1
850,393	-				-0.2
850,406	+				-0.9
850,430	+				-0.0
850,437	+				-0.3
850,437	+				+1.4
850,437	+				+1.4
850,441	-				+0.2
850,442	+				+0.2
850,442	+				+0.2
850,445	-				+0.6
850,445	-				+0.5
850,450	-				+0.1
850,455	-				-0.5
850,460	+				-0.1
850,496	+				+0.8
850,496	+				-0.2
850,496	+				-0.0
850,496	+				-1.5
850,496	+				+1.1
850,496	+				-0.6
850,496	+				-0.4
850,504	-				-0.6
850,515	+				+0.7
850,528	-				-2.0
850,529	-				+0.1
850,554	-				+0.1
850,556	+				+0.1
850,566	+				-0.8
850,578	+				-1.2
850,579	-				-0.5
850,604	+				+0.6
850,612	-				+0.2
850,619	+				-0.1
850,619	-				+0.3
850,629	+		GFF864	0.11	+1.0
850,629	+		GFF864	0.11	-0.7
850,629	+		GFF864	0.11	+1.0
850,629	+		GFF864	0.11	-0.0
850,629	-		GFF864	0.11	+0.5
850,634	+		GFF864	0.11	-0.5
850,637	-		GFF864	0.12	-1.0
850,638	+		GFF864	0.12	+1.0
850,638	+		GFF864	0.12	-0.3
850,646	-		GFF864	0.12	-0.8
850,679	+		GFF864	0.15	-0.3
850,687	-		GFF864	0.16	-1.4
850,687	-		GFF864	0.16	+0.7
850,687	-		GFF864	0.16	-0.5
850,694	-		GFF864	0.16	+0.8
850,694	-		GFF864	0.16	+0.5
850,696	+		GFF864	0.17	-0.5
850,702	+		GFF864	0.17	-1.4
850,704	-		GFF864	0.17	-0.1
850,704	-		GFF864	0.17	-0.1
850,712	-		GFF864	0.18	+0.9
850,734	+		GFF864	0.20	-0.3
850,748	+		GFF864	0.21	-0.6
850,757	-		GFF864	0.22	+0.7
850,757	-		GFF864	0.22	-1.0
850,757	-		GFF864	0.22	+0.8
850,757	-		GFF864	0.22	-0.4
850,757	-		GFF864	0.22	-1.4
850,833	-		GFF864	0.29	-0.3
850,851	+		GFF864	0.30	+0.4
850,859	-		GFF864	0.31	-1.0
850,871	-		GFF864	0.32	+1.4
850,876	+		GFF864	0.32	+0.2
850,883	+		GFF864	0.33	-1.8
850,883	+		GFF864	0.33	-2.1
850,933	+		GFF864	0.37	-0.7
850,933	+		GFF864	0.37	-1.4
850,941	-		GFF864	0.38	-0.3
850,941	-		GFF864	0.38	-1.9
850,941	-		GFF864	0.38	+0.6
850,941	-		GFF864	0.38	-0.5
850,953	+		GFF864	0.39	-0.8
850,972	+		GFF864	0.41	-1.0
850,983	+		GFF864	0.42	+0.2
850,983	+		GFF864	0.42	+0.5
850,986	-		GFF864	0.42	-0.6
850,991	-		GFF864	0.42	-2.0
850,991	-		GFF864	0.42	-0.0
851,045	-		GFF864	0.47	-1.0
851,056	+		GFF864	0.48	+0.3
851,056	+		GFF864	0.48	+1.0
851,058	+		GFF864	0.48	+1.0
851,081	+		GFF864	0.50	-0.7
851,089	-		GFF864	0.51	+0.9
851,089	-		GFF864	0.51	-1.8
851,114	-		GFF864	0.53	+0.3
851,133	+		GFF864	0.55	+0.2
851,133	+		GFF864	0.55	+1.1
851,133	+		GFF864	0.55	+0.0
851,133	+		GFF864	0.55	-0.2
851,133	+		GFF864	0.55	-1.0
851,133	+		GFF864	0.55	-1.0
851,138	+		GFF864	0.55	+0.5
851,141	-		GFF864	0.55	-0.2
851,141	-		GFF864	0.55	+0.6
851,141	-		GFF864	0.55	-0.9
851,141	-		GFF864	0.55	-1.7
851,141	-		GFF864	0.55	-1.5
851,141	-		GFF864	0.55	-0.8
851,147	+		GFF864	0.56	-1.2
851,151	-		GFF864	0.56	-0.3
851,155	-		GFF864	0.57	-3.2
851,155	-		GFF864	0.57	-1.5
851,155	-		GFF864	0.57	-1.4
851,163	-		GFF864	0.57	-0.5
851,188	-		GFF864	0.60	-1.6
851,190	+		GFF864	0.60	-0.3
851,191	+		GFF864	0.60	-0.2
851,195	+		GFF864	0.60	-1.2
851,198	-		GFF864	0.60	-2.1
851,198	-		GFF864	0.60	+1.5
851,231	+		GFF864	0.63	-0.7
851,239	-		GFF864	0.64	+0.0
851,263	+		GFF864	0.66	-0.3
851,268	+		GFF864	0.67	+0.1
851,268	+		GFF864	0.67	-1.4
851,268	+		GFF864	0.67	+0.2
851,268	+		GFF864	0.67	-0.1
851,268	+		GFF864	0.67	+1.3
851,271	-		GFF864	0.67	+0.4
851,273	+		GFF864	0.67	-0.4
851,273	+		GFF864	0.67	-0.6
851,276	-		GFF864	0.67	-2.0
851,276	-		GFF864	0.67	-0.4
851,281	-		GFF864	0.68	+0.4
851,281	-		GFF864	0.68	-1.7
851,286	-		GFF864	0.68	+1.1
851,287	+		GFF864	0.68	+0.2
851,288	-		GFF864	0.68	-0.4
851,288	-		GFF864	0.68	-0.7
851,296	+		GFF864	0.69	+0.3
851,296	-		GFF864	0.69	+0.8
851,297	-		GFF864	0.69	-1.0
851,302	+		GFF864	0.70	-0.4
851,302	+		GFF864	0.70	+2.2
851,318	-		GFF864	0.71	+0.4
851,318	-		GFF864	0.71	+0.3
851,341	+		GFF864	0.73	-0.0
851,349	-		GFF864	0.74	-0.4
851,349	-		GFF864	0.74	-2.1
851,351	-		GFF864	0.74	+0.7
851,352	-		GFF864	0.74	-0.1
851,372	+		GFF864	0.76	-0.2
851,377	+		GFF864	0.76	-0.2
851,385	-		GFF864	0.77	-0.1
851,385	-		GFF864	0.77	+0.0
851,390	-		GFF864	0.77	+0.9
851,414	+		GFF864	0.79	-1.4
851,418	-		GFF864	0.80	+0.6
851,420	+		GFF864	0.80	-0.7
851,421	+		GFF864	0.80	-1.9
851,421	+		GFF864	0.80	+0.8
851,427	+		GFF864	0.80	-0.1
851,434	-		GFF864	0.81	-1.3
851,455	+		GFF864	0.83	-1.7
851,455	+		GFF864	0.83	-0.2