Strain Fitness in Sphingobium sp. HT1-2 around GFF839

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
824,574	-		GFF835	0.84	-1.8
824,640	+		GFF835	0.88	-0.6
824,640	+		GFF835	0.88	-0.7
824,692	+				-0.2
824,692	+				-2.0
824,692	+				+1.4
824,752	+				+1.2
824,771	-				-0.2
824,808	+				-1.1
824,808	+				-1.4
824,821	+				-0.0
824,829	-				-0.2
824,834	-				+0.2
824,839	-				-0.4
824,853	+				-0.2
824,853	+				-0.6
824,861	-				+0.6
824,861	-				+1.5
824,861	-				+0.4
824,891	+		GFF836	0.16	+0.7
824,891	+		GFF836	0.16	-1.3
824,891	+		GFF836	0.16	-0.2
824,891	+		GFF836	0.16	-0.0
824,892	+		GFF836	0.17	-0.3
824,897	+		GFF836	0.20	-1.8
824,898	+		GFF836	0.21	-0.3
824,898	+		GFF836	0.21	-1.7
824,898	+		GFF836	0.21	+0.4
824,898	+		GFF836	0.21	-2.4
824,899	-		GFF836	0.22	-1.6
824,899	-		GFF836	0.22	+0.3
824,899	-		GFF836	0.22	-0.2
824,906	-		GFF836	0.26	-2.1
824,906	-		GFF836	0.26	+0.8
824,906	-		GFF836	0.26	-1.0
824,906	-		GFF836	0.26	-0.8
824,906	-		GFF836	0.26	-0.4
824,906	-		GFF836	0.26	-0.4
824,906	-		GFF836	0.26	+0.4
824,906	-		GFF836	0.26	-0.5
824,926	+		GFF836	0.39	-1.1
824,926	+		GFF836	0.39	-0.9
824,926	+		GFF836	0.39	-2.8
824,926	+		GFF836	0.39	-0.0
824,926	+		GFF836	0.39	+0.7
824,926	+		GFF836	0.39	-0.1
824,934	-		GFF836	0.44	-0.3
824,944	-		GFF836	0.51	-0.8
824,967	+		GFF836	0.66	-0.3
825,046	+				-2.1
825,047	+				+0.6
825,203	-				-2.2
825,258	-		GFF838	0.15	+1.6
825,270	+		GFF838	0.20	+0.3
825,270	+		GFF838	0.20	-0.4
825,270	+		GFF838	0.20	-2.3
825,270	+		GFF838	0.20	-1.3
825,270	+		GFF838	0.20	-0.7
825,270	+		GFF838	0.20	-0.3
825,270	+		GFF838	0.20	+0.0
825,270	+		GFF838	0.20	+0.7
825,270	+		GFF838	0.20	+0.7
825,278	-		GFF838	0.23	-1.4
825,278	-		GFF838	0.23	-0.1
825,278	-		GFF838	0.23	-0.2
825,278	-		GFF838	0.23	-0.2
825,278	-		GFF838	0.23	-1.5
825,278	-		GFF838	0.23	+0.0
825,278	-		GFF838	0.23	+0.5
825,292	-		GFF838	0.28	+0.9
825,335	-		GFF838	0.45	-0.3
825,345	+		GFF838	0.49	+0.2
825,359	+		GFF838	0.55	-0.5
825,359	+		GFF838	0.55	-1.3
825,364	+		GFF838	0.56	-0.2
825,364	+		GFF838	0.56	-0.3
825,372	-		GFF838	0.60	+0.1
825,407	+		GFF838	0.73	-1.7
825,407	+		GFF838	0.73	+1.3
825,415	-		GFF838	0.76	-1.1
825,415	-		GFF838	0.76	-2.2
825,415	-		GFF838	0.76	-0.4
825,415	-		GFF838	0.76	+0.3
825,415	-		GFF838	0.76	-0.8
825,425	-		GFF838	0.80	-2.2
825,430	-		GFF838	0.82	+0.5
825,430	-		GFF838	0.82	+0.7
825,432	+		GFF838	0.83	+0.8
825,440	+		GFF838	0.86	-0.6
825,440	+		GFF838	0.86	+0.4
825,440	-		GFF838	0.86	-0.5
825,446	+		GFF838	0.89	+0.2
825,448	-		GFF838	0.89	+0.4
825,469	-				+0.1
825,486	-				-0.3
825,486	-				-2.1
825,504	-				-0.3
825,511	+				+0.6
825,511	+				+1.4
825,511	+				-0.9
825,511	+				-0.4
825,511	+				+0.0
825,519	+				-1.2
825,521	+				+0.4
825,532	+				-1.5
825,532	+				+1.1
825,540	-				-0.4
825,542	+				+0.2
825,545	-				-0.5
825,545	-				-1.4
825,550	-				-1.6
825,576	+				+0.3
825,580	+				+0.9
825,580	-				-3.3
825,583	-				-0.0
825,585	-				-1.0
825,603	-				-0.3
825,616	+				+1.0
825,616	+				-1.1
825,622	+				+0.7
825,624	-				+0.6
825,659	+				-0.0
825,659	+				-0.2
825,664	-				+1.7
825,671	+				+0.3
825,672	-				-0.6
825,676	+				-2.0
825,684	-				+0.6
825,684	-				-0.6
825,684	-				+0.8
825,684	-				+0.6
825,686	+				+1.3
825,686	-				+1.7
825,691	-				-0.2
825,692	-				-0.6
825,694	-				+0.2
825,696	+				-2.2
825,700	+				+0.9
825,704	-		GFF839	0.10	-1.8
825,714	+		GFF839	0.11	-2.2
825,714	+		GFF839	0.11	-0.2
825,722	-		GFF839	0.11	-1.0
825,722	-		GFF839	0.11	+0.3
825,722	-		GFF839	0.11	-0.3
825,727	-		GFF839	0.11	-0.4
825,734	-		GFF839	0.12	-0.8
825,744	-		GFF839	0.12	-1.2
825,749	-		GFF839	0.12	+1.2
825,764	-		GFF839	0.13	-0.7
825,764	-		GFF839	0.13	+1.4
825,764	-		GFF839	0.13	-1.1
825,764	-		GFF839	0.13	+1.1
825,837	+		GFF839	0.17	-2.8
825,848	+		GFF839	0.17	-0.4
825,853	+		GFF839	0.17	-0.9
825,907	+		GFF839	0.20	-0.4
825,915	-		GFF839	0.21	-0.2
825,915	-		GFF839	0.21	+1.4
825,915	-		GFF839	0.21	+1.4
825,923	-		GFF839	0.21	-0.3
825,931	+		GFF839	0.21	+0.1
825,946	+		GFF839	0.22	-1.2
825,952	+		GFF839	0.22	+1.3
825,955	+		GFF839	0.23	+0.6
825,960	-		GFF839	0.23	-0.9
825,960	-		GFF839	0.23	-0.5
825,960	-		GFF839	0.23	-0.0
825,970	-		GFF839	0.23	-1.0
825,999	+		GFF839	0.25	-0.7
826,014	+		GFF839	0.25	-0.6
826,014	+		GFF839	0.25	+0.7
826,017	-		GFF839	0.26	-1.6
826,019	+		GFF839	0.26	-1.5
826,019	+		GFF839	0.26	+0.1
826,019	-		GFF839	0.26	+0.1
826,022	-		GFF839	0.26	+1.1
826,022	-		GFF839	0.26	-0.5
826,022	-		GFF839	0.26	-0.3
826,022	-		GFF839	0.26	-0.8
826,022	-		GFF839	0.26	-1.4
826,027	-		GFF839	0.26	+1.2
826,037	-		GFF839	0.27	-0.8
826,045	+		GFF839	0.27	-0.6
826,045	+		GFF839	0.27	+1.2
826,045	+		GFF839	0.27	-1.0
826,045	+		GFF839	0.27	+0.9
826,053	-		GFF839	0.27	-0.1
826,053	-		GFF839	0.27	+1.3
826,057	+		GFF839	0.28	-2.2
826,065	+		GFF839	0.28	+0.1
826,065	+		GFF839	0.28	-0.6
826,065	+		GFF839	0.28	+0.6
826,065	+		GFF839	0.28	-0.5
826,065	+		GFF839	0.28	-0.6
826,065	+		GFF839	0.28	-0.6
826,065	+		GFF839	0.28	+0.5
826,065	+		GFF839	0.28	+0.2
826,065	+		GFF839	0.28	+1.5
826,065	+		GFF839	0.28	-1.2
826,067	-		GFF839	0.28	+0.4
826,073	-		GFF839	0.28	+0.6
826,073	-		GFF839	0.28	-0.6
826,073	-		GFF839	0.28	-0.5
826,073	-		GFF839	0.28	-0.6
826,073	-		GFF839	0.28	+0.4
826,073	-		GFF839	0.28	-1.7
826,073	-		GFF839	0.28	-1.4
826,073	-		GFF839	0.28	+0.6
826,073	-		GFF839	0.28	-0.5
826,073	-		GFF839	0.28	+0.4
826,073	-		GFF839	0.28	+0.1
826,073	-		GFF839	0.28	-1.4
826,073	-		GFF839	0.28	-0.4
826,073	-		GFF839	0.28	-0.9
826,073	-		GFF839	0.28	-0.4
826,073	-		GFF839	0.28	+1.2
826,075	+		GFF839	0.28	+0.5
826,080	-		GFF839	0.29	+1.1
826,088	-		GFF839	0.29	+0.5
826,093	-		GFF839	0.29	-0.8
826,100	-		GFF839	0.30	-1.7
826,100	-		GFF839	0.30	-1.7
826,100	-		GFF839	0.30	-0.3
826,100	-		GFF839	0.30	+0.1
826,110	-		GFF839	0.30	-1.6
826,128	+		GFF839	0.31	+0.2
826,166	-		GFF839	0.33	-1.4
826,174	-		GFF839	0.33	-1.0
826,189	-		GFF839	0.34	+0.5
826,215	+		GFF839	0.35	+0.0
826,230	+		GFF839	0.36	+0.1
826,230	+		GFF839	0.36	-1.0
826,235	+		GFF839	0.36	+0.3
826,235	+		GFF839	0.36	-0.3
826,235	+		GFF839	0.36	-0.8
826,260	+		GFF839	0.38	-0.0
826,260	+		GFF839	0.38	-1.2
826,265	+		GFF839	0.38	-1.9
826,268	-		GFF839	0.38	-0.7
826,268	-		GFF839	0.38	-0.0
826,268	-		GFF839	0.38	-0.2
826,268	-		GFF839	0.38	-0.7
826,290	-		GFF839	0.39	-1.4
826,295	-		GFF839	0.39	+1.1
826,309	-		GFF839	0.40	-0.2
826,395	+		GFF839	0.44	-0.5
826,403	-		GFF839	0.45	-1.3
826,403	-		GFF839	0.45	+0.7
826,403	-		GFF839	0.45	+0.3
826,403	-		GFF839	0.45	+1.7
826,403	-		GFF839	0.45	-0.0
826,507	-		GFF839	0.50	+0.8
826,522	-		GFF839	0.51	+0.6
826,546	+		GFF839	0.52	-1.6
826,573	+		GFF839	0.53	-1.8
826,578	+		GFF839	0.53	+0.3
826,578	+		GFF839	0.53	-0.2
826,578	+		GFF839	0.53	+0.9
826,578	+		GFF839	0.53	+0.4
826,578	+		GFF839	0.53	-1.4
826,578	+		GFF839	0.53	+0.7
826,586	-		GFF839	0.54	-1.2
826,586	-		GFF839	0.54	+0.7
826,586	-		GFF839	0.54	-0.9
826,588	+		GFF839	0.54	+0.2
826,596	-		GFF839	0.54	-1.5
826,609	-		GFF839	0.55	-1.6
826,645	+		GFF839	0.57	+0.1
826,653	-		GFF839	0.57	+1.1
826,653	-		GFF839	0.57	-0.8
826,653	-		GFF839	0.57	-1.2
826,719	-		GFF839	0.60	-1.6
826,763	+		GFF839	0.63	-0.5
826,838	+		GFF839	0.66	+0.8
826,846	-		GFF839	0.67	-0.1
826,846	-		GFF839	0.67	-1.6
826,846	-		GFF839	0.67	+0.6
826,855	+		GFF839	0.67	+0.6
826,858	-		GFF839	0.67	-0.1
826,860	-		GFF839	0.67	+1.0
826,876	+		GFF839	0.68	-0.3
826,877	-		GFF839	0.68	-0.0
826,884	-		GFF839	0.69	-1.7
826,884	-		GFF839	0.69	+0.4
826,896	+		GFF839	0.69	+0.5
826,896	+		GFF839	0.69	-0.5
826,896	+		GFF839	0.69	-0.2
826,897	-		GFF839	0.69	-1.3
826,927	+		GFF839	0.71	+0.8
826,935	+		GFF839	0.71	+0.3
826,935	+		GFF839	0.71	+0.8
826,935	-		GFF839	0.71	-2.2
826,940	+		GFF839	0.71	+0.3
826,940	+		GFF839	0.71	+0.2
826,948	-		GFF839	0.72	-0.3
826,948	-		GFF839	0.72	-0.6
826,948	-		GFF839	0.72	+0.7
826,948	-		GFF839	0.72	-0.2
826,972	-		GFF839	0.73	-1.2
826,975	-		GFF839	0.73	-1.4
826,986	-		GFF839	0.74	-1.2
826,986	-		GFF839	0.74	+0.7
827,034	+		GFF839	0.76	-0.1
827,034	+		GFF839	0.76	-0.5
827,034	+		GFF839	0.76	-0.5
827,034	+		GFF839	0.76	-0.1
827,044	+		GFF839	0.76	-2.1
827,044	+		GFF839	0.76	+0.4
827,070	+		GFF839	0.78	-0.0
827,111	-		GFF839	0.80	-0.2
827,131	-		GFF839	0.81	-1.2
827,191	+		GFF839	0.84	+0.0
827,191	+		GFF839	0.84	+1.2
827,191	+		GFF839	0.84	-2.0
827,191	+		GFF839	0.84	-0.5
827,199	+		GFF839	0.84	+0.4
827,214	+		GFF839	0.85	-0.7
827,214	+		GFF839	0.85	-0.4
827,217	+		GFF839	0.85	-0.2
827,233	+		GFF839	0.86	-0.5
827,233	+		GFF839	0.86	-2.9
827,233	+		GFF839	0.86	-1.6
827,235	+		GFF839	0.86	+1.0
827,241	-		GFF839	0.86	+0.3
827,241	-		GFF839	0.86	-1.5
827,243	-		GFF839	0.86	+0.4
827,245	+		GFF839	0.86	+0.1
827,246	+		GFF839	0.86	+0.2
827,253	-		GFF839	0.87	+0.2
827,261	-		GFF839	0.87	-0.9
827,269	+		GFF839	0.88	+0.6
827,277	-		GFF839	0.88	-0.0
827,309	-		GFF839	0.90	-0.1
827,314	-		GFF839	0.90	-1.1
827,316	+		GFF839	0.90	-0.4
827,316	+		GFF839	0.90	-1.2
827,316	+		GFF839	0.90	+0.8
827,316	+		GFF839	0.90	-0.8
827,316	+		GFF839	0.90	+0.4
827,334	-				-1.3
827,340	+				-0.2
827,341	+				-1.5
827,350	+				+0.4
827,365	+				+0.4
827,365	+				+0.1
827,365	+				-0.7
827,365	+				+0.4
827,365	+				-0.3
827,365	+				+0.6
827,372	+				-0.4
827,373	-				-0.1
827,373	-				+0.8
827,373	-				+1.3
827,373	-				+0.4
827,373	-				+0.9
827,373	-				+1.4
827,373	-				+0.4
827,373	-				+0.5
827,373	-				-3.0
827,373	-				-1.4
827,397	+				+0.6
827,399	+				-1.6
827,399	+				-1.0
827,407	-				-0.2
827,409	+				-0.7
827,412	-				+1.8
827,412	-				+1.7
827,412	-				-0.8
827,441	-				-0.3
827,472	+				-0.1
827,472	+				+0.5
827,497	-				+0.4
827,499	-				+0.7
827,499	-				-2.8
827,499	-				-0.5
827,499	-				-1.1
827,499	-				+0.2
827,555	+				-0.3
827,577	+		GFF840	0.19	+0.2
827,577	+		GFF840	0.19	+0.0
827,582	+		GFF840	0.23	-1.5
827,583	-		GFF840	0.24	-0.4
827,583	-		GFF840	0.24	+0.9
827,603	+		GFF840	0.41	+0.1
827,603	+		GFF840	0.41	-1.1
827,606	-		GFF840	0.44	+0.6
827,608	+		GFF840	0.45	-0.9
827,611	-		GFF840	0.48	-0.1
827,611	-		GFF840	0.48	-1.0
827,616	-		GFF840	0.52	-0.5
827,616	-		GFF840	0.52	-0.3
827,616	-		GFF840	0.52	+0.3
827,623	+		GFF840	0.58	-0.7
827,623	+		GFF840	0.58	+0.5
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827,635	-		GFF840	0.68	-0.9
827,667	+				-0.7
827,672	+				+0.1
827,680	-				-0.0
827,685	-				+1.3
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828,055	-				-0.7
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828,103	+				-0.4
828,103	+				+1.1
828,103	+				-0.5
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828,174	+				+1.1
828,194	+				-1.4
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828,477	-		GFF842	0.70	-1.2