Strain Fitness in Sphingobium sp. HT1-2 around GFF827

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF825 and GFF826 overlap by 4 nucleotidesGFF826 and GFF827 overlap by 4 nucleotidesGFF827 and GFF828 overlap by 4 nucleotides GFF825 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 813,594 to 814,577 GFF825 GFF826 - Cobalamin synthase (EC 2.7.8.26), at 814,574 to 815,293 GFF826 GFF827 - 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11, at 815,290 to 815,859 GFF827 GFF828 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 815,856 to 816,869 GFF828 Position (kb) 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1at 814.320 kb on + strand, within GFF825at 814.325 kb on + strand, within GFF825at 814.348 kb on + strand, within GFF825at 814.351 kb on - strand, within GFF825at 814.384 kb on + strand, within GFF825at 814.501 kb on - strandat 814.573 kb on + strandat 814.579 kb on - strandat 814.617 kb on + strandat 814.617 kb on + strandat 814.625 kb on - strandat 814.635 kb on - strandat 814.669 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.697 kb on - strand, within GFF826at 814.697 kb on - strand, within GFF826at 814.758 kb on + strand, within GFF826at 814.766 kb on - strand, within GFF826at 814.826 kb on - strand, within GFF826at 814.842 kb on + strand, within GFF826at 814.850 kb on - strand, within GFF826at 814.853 kb on - strand, within GFF826at 814.854 kb on + strand, within GFF826at 814.862 kb on - strand, within GFF826at 814.862 kb on - strand, within GFF826at 814.862 kb on - strand, within GFF826at 814.875 kb on + strand, within GFF826at 814.895 kb on + strand, within GFF826at 814.896 kb on + strand, within GFF826at 814.896 kb on + strand, within GFF826at 814.904 kb on - strand, within GFF826at 814.925 kb on - strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.976 kb on + strand, within GFF826at 815.021 kb on + strand, within GFF826at 815.029 kb on - strand, within GFF826at 815.029 kb on - strand, within GFF826at 815.034 kb on - strand, within GFF826at 815.049 kb on + strand, within GFF826at 815.057 kb on - strand, within GFF826at 815.094 kb on + strand, within GFF826at 815.099 kb on + strand, within GFF826at 815.102 kb on - strand, within GFF826at 815.102 kb on - strand, within GFF826at 815.164 kb on + strand, within GFF826at 815.225 kb on + strandat 815.252 kb on - strandat 815.279 kb on + strandat 815.286 kb on + strandat 815.287 kb on - strandat 815.287 kb on - strandat 815.296 kb on + strandat 815.303 kb on + strandat 815.310 kb on - strandat 815.322 kb on - strandat 815.336 kb on - strandat 815.358 kb on - strand, within GFF827at 815.358 kb on - strand, within GFF827at 815.360 kb on + strand, within GFF827at 815.365 kb on + strand, within GFF827at 815.370 kb on + strand, within GFF827at 815.373 kb on - strand, within GFF827at 815.373 kb on - strand, within GFF827at 815.393 kb on + strand, within GFF827at 815.448 kb on + strand, within GFF827at 815.448 kb on + strand, within GFF827at 815.462 kb on - strand, within GFF827at 815.467 kb on + strand, within GFF827at 815.473 kb on + strand, within GFF827at 815.510 kb on + strand, within GFF827at 815.593 kb on + strand, within GFF827at 815.600 kb on - strand, within GFF827at 815.601 kb on - strand, within GFF827at 815.606 kb on - strand, within GFF827at 815.645 kb on - strand, within GFF827at 815.735 kb on + strand, within GFF827at 815.735 kb on + strand, within GFF827at 815.741 kb on + strand, within GFF827at 815.743 kb on - strand, within GFF827at 815.743 kb on - strand, within GFF827at 815.753 kb on - strand, within GFF827at 815.773 kb on + strand, within GFF827at 815.890 kb on - strandat 816.012 kb on + strand, within GFF828at 816.069 kb on + strand, within GFF828at 816.159 kb on - strand, within GFF828at 816.161 kb on - strand, within GFF828at 816.225 kb on - strand, within GFF828at 816.306 kb on - strand, within GFF828at 816.308 kb on + strand, within GFF828at 816.318 kb on + strand, within GFF828at 816.326 kb on - strand, within GFF828at 816.332 kb on + strand, within GFF828at 816.333 kb on + strand, within GFF828at 816.460 kb on + strand, within GFF828at 816.489 kb on - strand, within GFF828at 816.765 kb on + strand, within GFF828at 816.773 kb on - strandat 816.801 kb on + strandat 816.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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814,320 + GFF825 0.74 -0.9
814,325 + GFF825 0.74 -0.4
814,348 + GFF825 0.77 -1.5
814,351 - GFF825 0.77 -0.4
814,384 + GFF825 0.80 -1.2
814,501 - -1.2
814,573 + +1.0
814,579 - +0.7
814,617 + -1.9
814,617 + -1.0
814,625 - +0.4
814,635 - -1.3
814,669 + GFF826 0.13 -2.4
814,689 + GFF826 0.16 -1.9
814,689 + GFF826 0.16 +0.1
814,689 + GFF826 0.16 -0.6
814,689 + GFF826 0.16 -1.2
814,697 - GFF826 0.17 -1.9
814,697 - GFF826 0.17 -0.6
814,758 + GFF826 0.26 -0.9
814,766 - GFF826 0.27 -0.4
814,826 - GFF826 0.35 -2.7
814,842 + GFF826 0.37 -2.1
814,850 - GFF826 0.38 -1.1
814,853 - GFF826 0.39 -1.6
814,854 + GFF826 0.39 -0.4
814,862 - GFF826 0.40 -2.7
814,862 - GFF826 0.40 -0.6
814,862 - GFF826 0.40 +0.1
814,875 + GFF826 0.42 +0.4
814,895 + GFF826 0.45 -0.9
814,896 + GFF826 0.45 +0.1
814,896 + GFF826 0.45 -1.6
814,904 - GFF826 0.46 -1.8
814,925 - GFF826 0.49 -1.9
814,953 - GFF826 0.53 +0.1
814,953 - GFF826 0.53 +0.1
814,953 - GFF826 0.53 -0.8
814,953 - GFF826 0.53 -1.1
814,976 + GFF826 0.56 -1.1
815,021 + GFF826 0.62 -0.4
815,029 - GFF826 0.63 -1.8
815,029 - GFF826 0.63 -1.6
815,034 - GFF826 0.64 -2.3
815,049 + GFF826 0.66 -1.2
815,057 - GFF826 0.67 -2.4
815,094 + GFF826 0.72 -0.6
815,099 + GFF826 0.73 -2.2
815,102 - GFF826 0.73 -1.4
815,102 - GFF826 0.73 -1.3
815,164 + GFF826 0.82 -0.4
815,225 + -1.6
815,252 - -1.9
815,279 + +0.1
815,286 + -0.0
815,287 - -0.9
815,287 - -0.6
815,296 + -0.6
815,303 + -1.2
815,310 - -0.8
815,322 - -1.8
815,336 - -2.0
815,358 - GFF827 0.12 -1.1
815,358 - GFF827 0.12 -1.6
815,360 + GFF827 0.12 -0.0
815,365 + GFF827 0.13 -0.2
815,370 + GFF827 0.14 -1.5
815,373 - GFF827 0.15 +0.4
815,373 - GFF827 0.15 +0.2
815,393 + GFF827 0.18 -0.1
815,448 + GFF827 0.28 -0.4
815,448 + GFF827 0.28 +0.8
815,462 - GFF827 0.30 +0.5
815,467 + GFF827 0.31 -2.1
815,473 + GFF827 0.32 -0.2
815,510 + GFF827 0.39 -1.2
815,593 + GFF827 0.53 -1.1
815,600 - GFF827 0.54 -1.4
815,601 - GFF827 0.55 -1.5
815,606 - GFF827 0.55 -1.9
815,645 - GFF827 0.62 +0.6
815,735 + GFF827 0.78 -1.9
815,735 + GFF827 0.78 +0.4
815,741 + GFF827 0.79 +0.6
815,743 - GFF827 0.79 -0.9
815,743 - GFF827 0.79 -1.3
815,753 - GFF827 0.81 -0.5
815,773 + GFF827 0.85 -0.8
815,890 - -0.8
816,012 + GFF828 0.15 -2.3
816,069 + GFF828 0.21 -0.9
816,159 - GFF828 0.30 -0.8
816,161 - GFF828 0.30 -3.3
816,225 - GFF828 0.36 -1.9
816,306 - GFF828 0.44 -0.4
816,308 + GFF828 0.45 +0.4
816,318 + GFF828 0.46 -1.8
816,326 - GFF828 0.46 -1.2
816,332 + GFF828 0.47 -1.9
816,333 + GFF828 0.47 -1.1
816,460 + GFF828 0.60 -1.2
816,489 - GFF828 0.62 -1.3
816,765 + GFF828 0.90 -0.2
816,773 - -1.8
816,801 + -1.9
816,804 - -1.5

Or see this region's nucleotide sequence