Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF817 and GFF818 are separated by 129 nucleotides GFF818 and GFF819 are separated by 142 nucleotides GFF819 and GFF820 are separated by 111 nucleotides
GFF817 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 805,822 to 807,402
GFF817
GFF818 - Phosphoserine aminotransferase (EC 2.6.1.52), at 807,532 to 808,695
GFF818
GFF819 - RNA binding S1 domain protein, at 808,838 to 809,554
GFF819
GFF820 - hypothetical protein, at 809,666 to 810,544
GFF820
Position (kb) 807
808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 806.534 kb on + strand, within GFF817 at 806.534 kb on + strand, within GFF817 at 806.542 kb on - strand, within GFF817 at 806.576 kb on - strand, within GFF817 at 806.635 kb on - strand, within GFF817 at 807.076 kb on - strand, within GFF817 at 807.130 kb on - strand, within GFF817 at 807.413 kb on - strand at 807.542 kb on + strand at 807.542 kb on + strand at 807.542 kb on + strand at 807.542 kb on + strand at 807.550 kb on - strand at 807.550 kb on - strand at 807.550 kb on - strand at 807.550 kb on - strand at 807.554 kb on + strand at 807.599 kb on + strand at 807.709 kb on - strand, within GFF818 at 807.712 kb on + strand, within GFF818 at 807.734 kb on + strand, within GFF818 at 807.738 kb on + strand, within GFF818 at 807.783 kb on + strand, within GFF818 at 807.809 kb on + strand, within GFF818 at 807.817 kb on - strand, within GFF818 at 807.880 kb on - strand, within GFF818 at 807.949 kb on - strand, within GFF818 at 807.949 kb on - strand, within GFF818 at 807.961 kb on - strand, within GFF818 at 807.989 kb on + strand, within GFF818 at 807.989 kb on + strand, within GFF818 at 807.997 kb on - strand, within GFF818 at 807.997 kb on - strand, within GFF818 at 807.997 kb on - strand, within GFF818 at 808.067 kb on - strand, within GFF818 at 808.117 kb on - strand, within GFF818 at 808.138 kb on + strand, within GFF818 at 808.138 kb on + strand, within GFF818 at 808.142 kb on - strand, within GFF818 at 808.146 kb on - strand, within GFF818 at 808.146 kb on - strand, within GFF818 at 808.146 kb on - strand, within GFF818 at 808.176 kb on - strand, within GFF818 at 808.319 kb on - strand, within GFF818 at 808.330 kb on - strand, within GFF818 at 808.330 kb on - strand, within GFF818 at 808.340 kb on - strand, within GFF818 at 808.444 kb on + strand, within GFF818 at 808.469 kb on + strand, within GFF818 at 808.472 kb on - strand, within GFF818 at 808.477 kb on - strand, within GFF818 at 808.580 kb on - strand at 808.596 kb on - strand at 808.597 kb on - strand at 808.699 kb on - strand at 808.706 kb on + strand at 808.708 kb on + strand at 808.714 kb on - strand at 808.727 kb on + strand at 808.736 kb on - strand at 808.755 kb on + strand at 808.763 kb on - strand at 808.835 kb on + strand at 808.997 kb on + strand, within GFF819 at 809.001 kb on + strand, within GFF819 at 809.011 kb on - strand, within GFF819 at 809.036 kb on + strand, within GFF819 at 809.053 kb on + strand, within GFF819 at 809.059 kb on + strand, within GFF819 at 809.067 kb on - strand, within GFF819 at 809.073 kb on + strand, within GFF819 at 809.127 kb on + strand, within GFF819 at 809.135 kb on - strand, within GFF819 at 809.135 kb on - strand, within GFF819 at 809.145 kb on - strand, within GFF819 at 809.165 kb on - strand, within GFF819 at 809.165 kb on - strand, within GFF819 at 809.170 kb on - strand, within GFF819 at 809.212 kb on + strand, within GFF819 at 809.219 kb on + strand, within GFF819 at 809.225 kb on - strand, within GFF819 at 809.225 kb on - strand, within GFF819 at 809.225 kb on - strand, within GFF819 at 809.225 kb on - strand, within GFF819 at 809.225 kb on - strand, within GFF819 at 809.227 kb on - strand, within GFF819 at 809.227 kb on - strand, within GFF819 at 809.235 kb on - strand, within GFF819 at 809.250 kb on - strand, within GFF819 at 809.266 kb on + strand, within GFF819 at 809.310 kb on + strand, within GFF819 at 809.338 kb on - strand, within GFF819 at 809.338 kb on - strand, within GFF819 at 809.359 kb on - strand, within GFF819 at 809.362 kb on + strand, within GFF819 at 809.388 kb on + strand, within GFF819 at 809.441 kb on + strand, within GFF819 at 809.449 kb on - strand, within GFF819 at 809.449 kb on - strand, within GFF819 at 809.449 kb on - strand, within GFF819 at 809.453 kb on - strand, within GFF819 at 809.462 kb on + strand, within GFF819 at 809.464 kb on + strand, within GFF819 at 809.464 kb on + strand, within GFF819 at 809.464 kb on + strand, within GFF819 at 809.472 kb on - strand, within GFF819 at 809.472 kb on - strand, within GFF819 at 809.477 kb on - strand, within GFF819 at 809.496 kb on - strand at 809.496 kb on - strand at 809.555 kb on + strand at 809.557 kb on - strand at 809.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 806,534 + GFF817 0.45 +0.4 806,534 + GFF817 0.45 -0.9 806,542 - GFF817 0.46 -0.4 806,576 - GFF817 0.48 -0.8 806,635 - GFF817 0.51 +0.1 807,076 - GFF817 0.79 -0.9 807,130 - GFF817 0.83 -0.8 807,413 - +1.0 807,542 + -0.2 807,542 + -0.1 807,542 + -0.9 807,542 + -0.6 807,550 - -1.3 807,550 - +0.3 807,550 - -0.0 807,550 - +0.5 807,554 + -0.8 807,599 + -2.1 807,709 - GFF818 0.15 -1.3 807,712 + GFF818 0.15 -2.6 807,734 + GFF818 0.17 -1.4 807,738 + GFF818 0.18 -2.3 807,783 + GFF818 0.22 -1.4 807,809 + GFF818 0.24 -2.9 807,817 - GFF818 0.24 -0.8 807,880 - GFF818 0.30 -0.8 807,949 - GFF818 0.36 -0.2 807,949 - GFF818 0.36 -2.0 807,961 - GFF818 0.37 +0.1 807,989 + GFF818 0.39 -2.0 807,989 + GFF818 0.39 -0.6 807,997 - GFF818 0.40 -2.2 807,997 - GFF818 0.40 -3.7 807,997 - GFF818 0.40 -2.6 808,067 - GFF818 0.46 +0.4 808,117 - GFF818 0.50 -2.3 808,138 + GFF818 0.52 -0.6 808,138 + GFF818 0.52 -1.8 808,142 - GFF818 0.52 -0.4 808,146 - GFF818 0.53 -1.3 808,146 - GFF818 0.53 -1.9 808,146 - GFF818 0.53 -2.7 808,176 - GFF818 0.55 -0.2 808,319 - GFF818 0.68 -0.4 808,330 - GFF818 0.69 -1.3 808,330 - GFF818 0.69 -0.9 808,340 - GFF818 0.69 -2.5 808,444 + GFF818 0.78 -0.9 808,469 + GFF818 0.80 -2.8 808,472 - GFF818 0.81 -1.8 808,477 - GFF818 0.81 +0.1 808,580 - +0.1 808,596 - +0.4 808,597 - -2.1 808,699 - -0.8 808,706 + -0.1 808,708 + -0.6 808,714 - -1.2 808,727 + -0.7 808,736 - -1.6 808,755 + -1.9 808,763 - -0.8 808,835 + -1.1 808,997 + GFF819 0.22 +0.1 809,001 + GFF819 0.23 -0.3 809,011 - GFF819 0.24 +0.1 809,036 + GFF819 0.28 -1.4 809,053 + GFF819 0.30 -1.4 809,059 + GFF819 0.31 -0.1 809,067 - GFF819 0.32 +0.2 809,073 + GFF819 0.33 -0.5 809,127 + GFF819 0.40 +0.9 809,135 - GFF819 0.41 -0.0 809,135 - GFF819 0.41 -0.6 809,145 - GFF819 0.43 +1.6 809,165 - GFF819 0.46 +0.9 809,165 - GFF819 0.46 +0.3 809,170 - GFF819 0.46 +0.1 809,212 + GFF819 0.52 -0.0 809,219 + GFF819 0.53 -0.9 809,225 - GFF819 0.54 -1.3 809,225 - GFF819 0.54 +0.6 809,225 - GFF819 0.54 -0.1 809,225 - GFF819 0.54 -0.4 809,225 - GFF819 0.54 -0.3 809,227 - GFF819 0.54 +0.0 809,227 - GFF819 0.54 +0.1 809,235 - GFF819 0.55 -1.4 809,250 - GFF819 0.57 -0.1 809,266 + GFF819 0.60 +0.3 809,310 + GFF819 0.66 -0.6 809,338 - GFF819 0.70 +0.5 809,338 - GFF819 0.70 -0.6 809,359 - GFF819 0.73 +0.5 809,362 + GFF819 0.73 -1.0 809,388 + GFF819 0.77 -0.2 809,441 + GFF819 0.84 +0.3 809,449 - GFF819 0.85 -1.5 809,449 - GFF819 0.85 -0.9 809,449 - GFF819 0.85 -1.5 809,453 - GFF819 0.86 +1.7 809,462 + GFF819 0.87 -1.7 809,464 + GFF819 0.87 -1.4 809,464 + GFF819 0.87 -0.1 809,464 + GFF819 0.87 +0.6 809,472 - GFF819 0.88 -0.3 809,472 - GFF819 0.88 +0.2 809,477 - GFF819 0.89 -1.2 809,496 - +0.9 809,496 - +0.1 809,555 + -0.2 809,557 - +0.7 809,627 + -0.5
Or see this region's nucleotide sequence