Strain Fitness in Sphingobium sp. HT1-2 around GFF816

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF815 and GFF816 overlap by 7 nucleotidesGFF816 and GFF817 are separated by 177 nucleotides GFF815 - Esterase/lipase, at 803,660 to 804,520 GFF815 GFF816 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 804,514 to 805,644 GFF816 GFF817 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 805,822 to 807,402 GFF817 Position (kb) 804 805 806Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 803.516 kb on + strandat 803.516 kb on + strandat 803.518 kb on - strandat 803.521 kb on + strandat 803.524 kb on - strandat 803.534 kb on - strandat 803.549 kb on - strandat 803.562 kb on + strandat 803.570 kb on - strandat 803.570 kb on - strandat 803.571 kb on + strandat 803.579 kb on - strandat 803.587 kb on - strandat 803.590 kb on + strandat 803.726 kb on - strandat 803.733 kb on - strandat 803.733 kb on - strandat 803.752 kb on + strand, within GFF815at 803.752 kb on + strand, within GFF815at 803.752 kb on + strand, within GFF815at 803.752 kb on + strand, within GFF815at 803.752 kb on + strand, within GFF815at 803.752 kb on + strand, within GFF815at 803.760 kb on - strand, within GFF815at 803.760 kb on - strand, within GFF815at 803.814 kb on - strand, within GFF815at 803.832 kb on - strand, within GFF815at 803.896 kb on + strand, within GFF815at 803.897 kb on - strand, within GFF815at 803.904 kb on - strand, within GFF815at 803.904 kb on - strand, within GFF815at 803.924 kb on + strand, within GFF815at 803.958 kb on + strand, within GFF815at 803.960 kb on + strand, within GFF815at 803.972 kb on + strand, within GFF815at 803.999 kb on + strand, within GFF815at 804.022 kb on + strand, within GFF815at 804.040 kb on - strand, within GFF815at 804.047 kb on + strand, within GFF815at 804.064 kb on - strand, within GFF815at 804.069 kb on + strand, within GFF815at 804.074 kb on + strand, within GFF815at 804.088 kb on + strand, within GFF815at 804.088 kb on + strand, within GFF815at 804.088 kb on + strand, within GFF815at 804.093 kb on + strand, within GFF815at 804.096 kb on - strand, within GFF815at 804.096 kb on - strand, within GFF815at 804.096 kb on - strand, within GFF815at 804.124 kb on + strand, within GFF815at 804.126 kb on - strand, within GFF815at 804.138 kb on - strand, within GFF815at 804.145 kb on - strand, within GFF815at 804.160 kb on + strand, within GFF815at 804.178 kb on - strand, within GFF815at 804.184 kb on + strand, within GFF815at 804.187 kb on - strand, within GFF815at 804.276 kb on - strand, within GFF815at 804.285 kb on + strand, within GFF815at 804.300 kb on - strand, within GFF815at 804.316 kb on + strand, within GFF815at 804.324 kb on - strand, within GFF815at 804.324 kb on - strand, within GFF815at 804.324 kb on - strand, within GFF815at 804.339 kb on + strand, within GFF815at 804.344 kb on + strand, within GFF815at 804.344 kb on + strand, within GFF815at 804.347 kb on - strand, within GFF815at 804.347 kb on - strand, within GFF815at 804.349 kb on + strand, within GFF815at 804.349 kb on + strand, within GFF815at 804.349 kb on + strand, within GFF815at 804.352 kb on - strand, within GFF815at 804.352 kb on - strand, within GFF815at 804.357 kb on - strand, within GFF815at 804.357 kb on - strand, within GFF815at 804.357 kb on - strand, within GFF815at 804.357 kb on - strand, within GFF815at 804.373 kb on + strand, within GFF815at 804.381 kb on - strand, within GFF815at 804.381 kb on - strand, within GFF815at 804.381 kb on - strand, within GFF815at 804.382 kb on + strand, within GFF815at 804.407 kb on - strand, within GFF815at 804.407 kb on - strand, within GFF815at 804.409 kb on + strand, within GFF815at 804.417 kb on - strand, within GFF815at 804.417 kb on - strand, within GFF815at 804.422 kb on - strand, within GFF815at 804.429 kb on + strand, within GFF815at 804.429 kb on + strand, within GFF815at 804.429 kb on + strand, within GFF815at 804.432 kb on - strand, within GFF815at 804.437 kb on - strandat 804.437 kb on - strandat 804.437 kb on - strandat 804.437 kb on - strandat 804.437 kb on - strandat 804.497 kb on - strandat 804.497 kb on - strandat 804.513 kb on + strandat 804.536 kb on - strandat 804.537 kb on + strandat 804.546 kb on + strandat 804.546 kb on + strandat 804.556 kb on + strandat 804.556 kb on + strandat 804.559 kb on - strandat 804.564 kb on - strandat 804.564 kb on - strandat 804.564 kb on - strandat 804.564 kb on - strandat 804.564 kb on - strandat 804.564 kb on - strandat 804.564 kb on - strandat 804.564 kb on - strandat 804.571 kb on + strandat 804.589 kb on + strandat 804.591 kb on - strandat 804.596 kb on + strandat 804.597 kb on - strandat 804.597 kb on - strandat 804.629 kb on - strand, within GFF816at 804.653 kb on + strand, within GFF816at 804.661 kb on - strand, within GFF816at 804.697 kb on + strand, within GFF816at 804.757 kb on + strand, within GFF816at 804.774 kb on - strand, within GFF816at 804.794 kb on + strand, within GFF816at 804.832 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.867 kb on + strand, within GFF816at 804.868 kb on + strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.876 kb on - strand, within GFF816at 804.933 kb on - strand, within GFF816at 804.938 kb on - strand, within GFF816at 804.948 kb on - strand, within GFF816at 804.960 kb on + strand, within GFF816at 804.968 kb on - strand, within GFF816at 804.988 kb on - strand, within GFF816at 804.993 kb on - strand, within GFF816at 804.998 kb on + strand, within GFF816at 805.093 kb on - strand, within GFF816at 805.144 kb on + strand, within GFF816at 805.145 kb on + strand, within GFF816at 805.148 kb on - strand, within GFF816at 805.148 kb on - strand, within GFF816at 805.148 kb on - strand, within GFF816at 805.151 kb on + strand, within GFF816at 805.283 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.354 kb on + strand, within GFF816at 805.371 kb on - strand, within GFF816at 805.376 kb on + strand, within GFF816at 805.384 kb on - strand, within GFF816at 805.439 kb on + strand, within GFF816at 805.444 kb on + strand, within GFF816at 805.444 kb on + strand, within GFF816at 805.474 kb on - strand, within GFF816at 805.479 kb on + strand, within GFF816at 805.479 kb on + strand, within GFF816at 805.487 kb on - strand, within GFF816at 805.488 kb on - strand, within GFF816at 805.493 kb on - strand, within GFF816at 805.519 kb on - strand, within GFF816at 805.536 kb on - strandat 805.542 kb on - strandat 805.542 kb on - strandat 805.576 kb on + strandat 805.585 kb on - strandat 805.617 kb on + strandat 805.631 kb on - strandat 805.646 kb on + strandat 805.685 kb on - strandat 805.717 kb on - strandat 805.717 kb on - strandat 805.727 kb on - strandat 805.727 kb on - strandat 805.744 kb on + strandat 805.749 kb on + strandat 805.765 kb on - strandat 805.767 kb on + strandat 805.779 kb on + strandat 805.779 kb on + strandat 805.785 kb on + strandat 805.831 kb on + strandat 805.837 kb on - strandat 805.838 kb on + strandat 805.864 kb on + strandat 805.872 kb on - strandat 805.874 kb on + strandat 805.879 kb on + strandat 805.961 kb on - strandat 805.997 kb on - strand, within GFF817at 805.997 kb on - strand, within GFF817at 806.036 kb on + strand, within GFF817at 806.083 kb on + strand, within GFF817at 806.083 kb on - strand, within GFF817at 806.098 kb on + strand, within GFF817at 806.103 kb on + strand, within GFF817at 806.108 kb on + strand, within GFF817at 806.110 kb on + strand, within GFF817at 806.111 kb on - strand, within GFF817at 806.116 kb on - strand, within GFF817at 806.116 kb on - strand, within GFF817at 806.281 kb on + strand, within GFF817at 806.290 kb on + strand, within GFF817at 806.298 kb on - strand, within GFF817at 806.338 kb on + strand, within GFF817at 806.375 kb on - strand, within GFF817at 806.406 kb on - strand, within GFF817at 806.426 kb on + strand, within GFF817at 806.457 kb on + strand, within GFF817at 806.534 kb on + strand, within GFF817at 806.534 kb on + strand, within GFF817at 806.542 kb on - strand, within GFF817at 806.576 kb on - strand, within GFF817at 806.635 kb on - strand, within GFF817

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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803,516 + +0.1
803,516 + -0.5
803,518 - -0.8
803,521 + -2.6
803,524 - +1.0
803,534 - -0.1
803,549 - +0.2
803,562 + -0.4
803,570 - -0.5
803,570 - +0.4
803,571 + -0.0
803,579 - +1.4
803,587 - -0.1
803,590 + -1.1
803,726 - -0.0
803,733 - +1.4
803,733 - -0.2
803,752 + GFF815 0.11 +0.2
803,752 + GFF815 0.11 -0.3
803,752 + GFF815 0.11 +1.6
803,752 + GFF815 0.11 +1.1
803,752 + GFF815 0.11 -1.0
803,752 + GFF815 0.11 -0.6
803,760 - GFF815 0.12 +1.7
803,760 - GFF815 0.12 +1.0
803,814 - GFF815 0.18 +1.0
803,832 - GFF815 0.20 -0.6
803,896 + GFF815 0.27 -0.5
803,897 - GFF815 0.28 -1.0
803,904 - GFF815 0.28 +0.0
803,904 - GFF815 0.28 -1.9
803,924 + GFF815 0.31 +0.5
803,958 + GFF815 0.35 +0.2
803,960 + GFF815 0.35 +0.8
803,972 + GFF815 0.36 +0.5
803,999 + GFF815 0.39 +1.0
804,022 + GFF815 0.42 +0.2
804,040 - GFF815 0.44 +0.4
804,047 + GFF815 0.45 +0.6
804,064 - GFF815 0.47 +0.7
804,069 + GFF815 0.48 -0.0
804,074 + GFF815 0.48 +0.1
804,088 + GFF815 0.50 -0.7
804,088 + GFF815 0.50 +1.2
804,088 + GFF815 0.50 -0.5
804,093 + GFF815 0.50 -0.3
804,096 - GFF815 0.51 -0.1
804,096 - GFF815 0.51 +0.1
804,096 - GFF815 0.51 -0.8
804,124 + GFF815 0.54 -0.3
804,126 - GFF815 0.54 +0.9
804,138 - GFF815 0.56 +0.1
804,145 - GFF815 0.56 -2.0
804,160 + GFF815 0.58 -0.8
804,178 - GFF815 0.60 +0.4
804,184 + GFF815 0.61 +1.3
804,187 - GFF815 0.61 -0.2
804,276 - GFF815 0.72 +0.4
804,285 + GFF815 0.73 -1.3
804,300 - GFF815 0.74 -0.1
804,316 + GFF815 0.76 +0.1
804,324 - GFF815 0.77 +0.0
804,324 - GFF815 0.77 +0.9
804,324 - GFF815 0.77 +0.1
804,339 + GFF815 0.79 +0.7
804,344 + GFF815 0.79 -1.5
804,344 + GFF815 0.79 +0.9
804,347 - GFF815 0.80 -0.4
804,347 - GFF815 0.80 -0.7
804,349 + GFF815 0.80 +0.2
804,349 + GFF815 0.80 +1.0
804,349 + GFF815 0.80 -0.4
804,352 - GFF815 0.80 +0.1
804,352 - GFF815 0.80 +0.4
804,357 - GFF815 0.81 +0.8
804,357 - GFF815 0.81 +0.9
804,357 - GFF815 0.81 +0.1
804,357 - GFF815 0.81 -0.3
804,373 + GFF815 0.83 +1.3
804,381 - GFF815 0.84 -0.7
804,381 - GFF815 0.84 -0.7
804,381 - GFF815 0.84 -1.2
804,382 + GFF815 0.84 +0.5
804,407 - GFF815 0.87 -0.6
804,407 - GFF815 0.87 +0.5
804,409 + GFF815 0.87 +0.9
804,417 - GFF815 0.88 -0.0
804,417 - GFF815 0.88 -0.5
804,422 - GFF815 0.89 +0.3
804,429 + GFF815 0.89 -1.0
804,429 + GFF815 0.89 -0.4
804,429 + GFF815 0.89 -0.4
804,432 - GFF815 0.90 +0.2
804,437 - -0.7
804,437 - -0.9
804,437 - -0.0
804,437 - +1.5
804,437 - -0.3
804,497 - +0.3
804,497 - +0.1
804,513 + -2.4
804,536 - -0.3
804,537 + -0.0
804,546 + -1.4
804,546 + -2.5
804,556 + -3.1
804,556 + -2.6
804,559 - -3.3
804,564 - -0.8
804,564 - -3.0
804,564 - +0.1
804,564 - -3.2
804,564 - -2.3
804,564 - -3.0
804,564 - -2.5
804,564 - -2.7
804,571 + +0.4
804,589 + -2.6
804,591 - -3.1
804,596 + -1.7
804,597 - -2.1
804,597 - -2.8
804,629 - GFF816 0.10 -1.3
804,653 + GFF816 0.12 -2.4
804,661 - GFF816 0.13 -0.9
804,697 + GFF816 0.16 -2.3
804,757 + GFF816 0.21 -1.8
804,774 - GFF816 0.23 -1.7
804,794 + GFF816 0.25 -1.1
804,832 + GFF816 0.28 -1.2
804,861 + GFF816 0.31 -2.6
804,861 + GFF816 0.31 -1.9
804,861 + GFF816 0.31 -3.0
804,861 + GFF816 0.31 -0.4
804,867 + GFF816 0.31 -3.0
804,868 + GFF816 0.31 -2.2
804,869 - GFF816 0.31 -2.6
804,869 - GFF816 0.31 -1.5
804,869 - GFF816 0.31 -2.6
804,876 - GFF816 0.32 -1.9
804,933 - GFF816 0.37 -1.3
804,938 - GFF816 0.37 -2.7
804,948 - GFF816 0.38 -2.7
804,960 + GFF816 0.39 -0.4
804,968 - GFF816 0.40 +0.4
804,988 - GFF816 0.42 -2.3
804,993 - GFF816 0.42 -3.5
804,998 + GFF816 0.43 -2.1
805,093 - GFF816 0.51 -2.1
805,144 + GFF816 0.56 -2.9
805,145 + GFF816 0.56 -4.0
805,148 - GFF816 0.56 -0.2
805,148 - GFF816 0.56 -1.0
805,148 - GFF816 0.56 -2.9
805,151 + GFF816 0.56 -1.9
805,283 + GFF816 0.68 -1.8
805,322 + GFF816 0.71 -2.9
805,322 + GFF816 0.71 -1.9
805,322 + GFF816 0.71 -3.6
805,322 + GFF816 0.71 -1.7
805,322 + GFF816 0.71 -2.7
805,330 - GFF816 0.72 -2.1
805,354 + GFF816 0.74 -2.1
805,371 - GFF816 0.76 -2.5
805,376 + GFF816 0.76 -2.2
805,384 - GFF816 0.77 -2.6
805,439 + GFF816 0.82 -2.6
805,444 + GFF816 0.82 -1.8
805,444 + GFF816 0.82 -2.8
805,474 - GFF816 0.85 -2.4
805,479 + GFF816 0.85 -2.9
805,479 + GFF816 0.85 -0.1
805,487 - GFF816 0.86 -3.6
805,488 - GFF816 0.86 -0.2
805,493 - GFF816 0.87 -0.8
805,519 - GFF816 0.89 -1.0
805,536 - -1.9
805,542 - +0.6
805,542 - -0.2
805,576 + -1.7
805,585 - -0.8
805,617 + -2.4
805,631 - -3.8
805,646 + -2.0
805,685 - -0.2
805,717 - -0.0
805,717 - +0.0
805,727 - -0.4
805,727 - +0.3
805,744 + +0.5
805,749 + +0.4
805,765 - +0.9
805,767 + -0.8
805,779 + -0.6
805,779 + -0.8
805,785 + -0.6
805,831 + -2.9
805,837 - -0.9
805,838 + -0.1
805,864 + -1.5
805,872 - -1.3
805,874 + -1.1
805,879 + +1.4
805,961 - -1.3
805,997 - GFF817 0.11 -0.4
805,997 - GFF817 0.11 +0.1
806,036 + GFF817 0.14 +0.1
806,083 + GFF817 0.17 -1.4
806,083 - GFF817 0.17 -0.0
806,098 + GFF817 0.17 +0.4
806,103 + GFF817 0.18 +0.8
806,108 + GFF817 0.18 -0.4
806,110 + GFF817 0.18 -1.2
806,111 - GFF817 0.18 +0.3
806,116 - GFF817 0.19 +2.0
806,116 - GFF817 0.19 -0.6
806,281 + GFF817 0.29 +0.2
806,290 + GFF817 0.30 -0.2
806,298 - GFF817 0.30 -1.9
806,338 + GFF817 0.33 +1.1
806,375 - GFF817 0.35 -1.9
806,406 - GFF817 0.37 +1.1
806,426 + GFF817 0.38 -2.3
806,457 + GFF817 0.40 -0.5
806,534 + GFF817 0.45 +0.4
806,534 + GFF817 0.45 -0.9
806,542 - GFF817 0.46 -0.4
806,576 - GFF817 0.48 -0.8
806,635 - GFF817 0.51 +0.1

Or see this region's nucleotide sequence