Strain Fitness in Sphingobium sp. HT1-2 around GFF783

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF782 and GFF783 are separated by 87 nucleotidesGFF783 and GFF784 are separated by 156 nucleotidesGFF784 and GFF785 are separated by 13 nucleotides GFF782 - TldD protein, part of TldE/TldD proteolytic complex, at 770,859 to 772,301 GFF782 GFF783 - protein of unknown function DUF924, at 772,389 to 772,964 GFF783 GFF784 - Nitrogen regulatory protein P-II, GlnK, at 773,121 to 773,459 GFF784 GFF785 - Ammonium transporter, at 773,473 to 774,819 GFF785 Position (kb) 772 773Strain fitness (log2 ratio) -2 -1 0 1 2at 771.416 kb on + strand, within GFF782at 771.465 kb on - strand, within GFF782at 771.494 kb on + strand, within GFF782at 771.499 kb on + strand, within GFF782at 771.545 kb on + strand, within GFF782at 771.545 kb on + strand, within GFF782at 771.545 kb on + strand, within GFF782at 771.545 kb on + strand, within GFF782at 771.551 kb on + strand, within GFF782at 771.551 kb on + strand, within GFF782at 771.553 kb on - strand, within GFF782at 771.559 kb on - strand, within GFF782at 771.559 kb on - strand, within GFF782at 771.565 kb on - strand, within GFF782at 771.590 kb on + strand, within GFF782at 771.603 kb on - strand, within GFF782at 771.613 kb on - strand, within GFF782at 771.613 kb on - strand, within GFF782at 771.627 kb on + strand, within GFF782at 771.657 kb on - strand, within GFF782at 771.657 kb on - strand, within GFF782at 771.666 kb on + strand, within GFF782at 771.674 kb on - strand, within GFF782at 771.713 kb on + strand, within GFF782at 771.799 kb on + strand, within GFF782at 771.829 kb on - strand, within GFF782at 771.836 kb on + strand, within GFF782at 771.837 kb on + strand, within GFF782at 771.849 kb on + strand, within GFF782at 771.849 kb on + strand, within GFF782at 771.852 kb on - strand, within GFF782at 771.855 kb on - strand, within GFF782at 771.857 kb on - strand, within GFF782at 771.857 kb on - strand, within GFF782at 771.857 kb on - strand, within GFF782at 771.880 kb on - strand, within GFF782at 771.953 kb on + strand, within GFF782at 771.953 kb on + strand, within GFF782at 771.953 kb on + strand, within GFF782at 771.953 kb on + strand, within GFF782at 771.953 kb on + strand, within GFF782at 771.961 kb on - strand, within GFF782at 771.963 kb on + strand, within GFF782at 771.963 kb on + strand, within GFF782at 771.963 kb on + strand, within GFF782at 771.971 kb on - strand, within GFF782at 771.971 kb on - strand, within GFF782at 771.971 kb on - strand, within GFF782at 771.984 kb on + strand, within GFF782at 771.986 kb on + strand, within GFF782at 772.067 kb on + strand, within GFF782at 772.067 kb on + strand, within GFF782at 772.067 kb on + strand, within GFF782at 772.075 kb on - strand, within GFF782at 772.075 kb on - strand, within GFF782at 772.131 kb on - strand, within GFF782at 772.131 kb on - strand, within GFF782at 772.157 kb on + strandat 772.165 kb on - strandat 772.165 kb on - strandat 772.165 kb on - strandat 772.165 kb on - strandat 772.176 kb on + strandat 772.184 kb on - strandat 772.214 kb on + strandat 772.218 kb on - strandat 772.222 kb on - strandat 772.229 kb on - strandat 772.229 kb on - strandat 772.270 kb on - strandat 772.281 kb on - strandat 772.349 kb on + strandat 772.415 kb on + strandat 772.440 kb on + strandat 772.464 kb on - strand, within GFF783at 772.479 kb on + strand, within GFF783at 772.487 kb on - strand, within GFF783at 772.487 kb on - strand, within GFF783at 772.497 kb on - strand, within GFF783at 772.497 kb on - strand, within GFF783at 772.497 kb on - strand, within GFF783at 772.511 kb on + strand, within GFF783at 772.519 kb on - strand, within GFF783at 772.524 kb on - strand, within GFF783at 772.588 kb on + strand, within GFF783at 772.613 kb on - strand, within GFF783at 772.627 kb on + strand, within GFF783at 772.645 kb on + strand, within GFF783at 772.649 kb on + strand, within GFF783at 772.649 kb on + strand, within GFF783at 772.650 kb on + strand, within GFF783at 772.650 kb on + strand, within GFF783at 772.650 kb on + strand, within GFF783at 772.658 kb on - strand, within GFF783at 772.704 kb on + strand, within GFF783at 772.709 kb on + strand, within GFF783at 772.709 kb on + strand, within GFF783at 772.717 kb on - strand, within GFF783at 772.732 kb on - strand, within GFF783at 772.771 kb on + strand, within GFF783at 772.806 kb on - strand, within GFF783at 772.882 kb on + strand, within GFF783at 772.892 kb on + strand, within GFF783at 772.902 kb on + strand, within GFF783at 772.910 kb on - strandat 772.910 kb on - strandat 772.920 kb on - strandat 772.958 kb on - strandat 772.961 kb on - strandat 773.129 kb on + strandat 773.163 kb on - strand, within GFF784at 773.208 kb on - strand, within GFF784at 773.225 kb on - strand, within GFF784at 773.242 kb on - strand, within GFF784at 773.249 kb on - strand, within GFF784at 773.416 kb on - strand, within GFF784at 773.426 kb on - strandat 773.431 kb on - strandat 773.471 kb on - strandat 773.518 kb on - strandat 773.544 kb on - strandat 773.554 kb on - strandat 773.554 kb on - strandat 773.561 kb on - strandat 773.575 kb on + strandat 773.575 kb on + strandat 773.585 kb on + strandat 773.586 kb on + strandat 773.596 kb on + strandat 773.596 kb on + strandat 773.609 kb on + strand, within GFF785at 773.650 kb on + strand, within GFF785at 773.653 kb on - strand, within GFF785at 773.653 kb on - strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.666 kb on + strand, within GFF785at 773.674 kb on - strand, within GFF785at 773.691 kb on + strand, within GFF785at 773.693 kb on - strand, within GFF785at 773.706 kb on + strand, within GFF785at 773.731 kb on + strand, within GFF785at 773.736 kb on + strand, within GFF785at 773.739 kb on - strand, within GFF785at 773.744 kb on - strand, within GFF785at 773.744 kb on - strand, within GFF785at 773.744 kb on - strand, within GFF785at 773.744 kb on - strand, within GFF785at 773.746 kb on + strand, within GFF785at 773.746 kb on + strand, within GFF785at 773.754 kb on - strand, within GFF785at 773.754 kb on - strand, within GFF785at 773.754 kb on - strand, within GFF785at 773.764 kb on - strand, within GFF785at 773.776 kb on + strand, within GFF785at 773.783 kb on - strand, within GFF785at 773.784 kb on - strand, within GFF785at 773.793 kb on + strand, within GFF785at 773.793 kb on + strand, within GFF785at 773.801 kb on - strand, within GFF785at 773.801 kb on - strand, within GFF785at 773.817 kb on - strand, within GFF785at 773.841 kb on - strand, within GFF785at 773.868 kb on - strand, within GFF785at 773.893 kb on + strand, within GFF785at 773.893 kb on + strand, within GFF785at 773.893 kb on + strand, within GFF785at 773.893 kb on + strand, within GFF785at 773.935 kb on + strand, within GFF785at 773.938 kb on - strand, within GFF785at 773.938 kb on - strand, within GFF785at 773.938 kb on - strand, within GFF785at 773.941 kb on + strand, within GFF785at 773.944 kb on - strand, within GFF785at 773.949 kb on - strand, within GFF785at 773.949 kb on - strand, within GFF785at 773.949 kb on - strand, within GFF785at 773.951 kb on + strand, within GFF785at 773.954 kb on - strand, within GFF785

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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771,416 + GFF782 0.39 -1.2
771,465 - GFF782 0.42 +0.4
771,494 + GFF782 0.44 +1.7
771,499 + GFF782 0.44 -1.6
771,545 + GFF782 0.48 +1.1
771,545 + GFF782 0.48 +0.2
771,545 + GFF782 0.48 -2.1
771,545 + GFF782 0.48 -1.1
771,551 + GFF782 0.48 +0.2
771,551 + GFF782 0.48 +0.4
771,553 - GFF782 0.48 -0.6
771,559 - GFF782 0.49 +0.4
771,559 - GFF782 0.49 +1.0
771,565 - GFF782 0.49 -1.7
771,590 + GFF782 0.51 +1.4
771,603 - GFF782 0.52 -0.9
771,613 - GFF782 0.52 +1.8
771,613 - GFF782 0.52 -1.1
771,627 + GFF782 0.53 +0.3
771,657 - GFF782 0.55 -0.4
771,657 - GFF782 0.55 -0.1
771,666 + GFF782 0.56 -1.3
771,674 - GFF782 0.56 -1.1
771,713 + GFF782 0.59 -0.1
771,799 + GFF782 0.65 +0.3
771,829 - GFF782 0.67 -0.3
771,836 + GFF782 0.68 +0.7
771,837 + GFF782 0.68 +2.0
771,849 + GFF782 0.69 -0.6
771,849 + GFF782 0.69 +0.5
771,852 - GFF782 0.69 -0.9
771,855 - GFF782 0.69 -0.1
771,857 - GFF782 0.69 -0.0
771,857 - GFF782 0.69 -0.8
771,857 - GFF782 0.69 +0.2
771,880 - GFF782 0.71 -0.8
771,953 + GFF782 0.76 +1.1
771,953 + GFF782 0.76 -0.4
771,953 + GFF782 0.76 -1.9
771,953 + GFF782 0.76 -0.8
771,953 + GFF782 0.76 +0.2
771,961 - GFF782 0.76 +1.1
771,963 + GFF782 0.77 +0.5
771,963 + GFF782 0.77 +0.7
771,963 + GFF782 0.77 +0.2
771,971 - GFF782 0.77 +1.7
771,971 - GFF782 0.77 +1.3
771,971 - GFF782 0.77 -1.9
771,984 + GFF782 0.78 +0.7
771,986 + GFF782 0.78 -0.2
772,067 + GFF782 0.84 +0.4
772,067 + GFF782 0.84 -0.2
772,067 + GFF782 0.84 -0.1
772,075 - GFF782 0.84 +1.6
772,075 - GFF782 0.84 +0.3
772,131 - GFF782 0.88 +0.1
772,131 - GFF782 0.88 +0.4
772,157 + +1.0
772,165 - +1.6
772,165 - -0.3
772,165 - +0.9
772,165 - +0.3
772,176 + -1.4
772,184 - -0.1
772,214 + -0.7
772,218 - -0.6
772,222 - -1.5
772,229 - +2.0
772,229 - +0.6
772,270 - -0.1
772,281 - +0.9
772,349 + -2.3
772,415 + +2.3
772,440 + -1.4
772,464 - GFF783 0.13 -2.1
772,479 + GFF783 0.16 -0.3
772,487 - GFF783 0.17 +1.3
772,487 - GFF783 0.17 +0.4
772,497 - GFF783 0.19 +1.9
772,497 - GFF783 0.19 -1.7
772,497 - GFF783 0.19 -0.3
772,511 + GFF783 0.21 +0.6
772,519 - GFF783 0.23 +0.1
772,524 - GFF783 0.23 -0.3
772,588 + GFF783 0.35 +1.0
772,613 - GFF783 0.39 -0.2
772,627 + GFF783 0.41 +1.1
772,645 + GFF783 0.44 -0.8
772,649 + GFF783 0.45 +0.1
772,649 + GFF783 0.45 +0.4
772,650 + GFF783 0.45 -1.2
772,650 + GFF783 0.45 -1.9
772,650 + GFF783 0.45 +0.5
772,658 - GFF783 0.47 +0.6
772,704 + GFF783 0.55 +1.7
772,709 + GFF783 0.56 +1.4
772,709 + GFF783 0.56 -0.8
772,717 - GFF783 0.57 +1.0
772,732 - GFF783 0.60 -0.2
772,771 + GFF783 0.66 -2.5
772,806 - GFF783 0.72 -0.3
772,882 + GFF783 0.86 +0.4
772,892 + GFF783 0.87 -0.2
772,902 + GFF783 0.89 -0.2
772,910 - -0.8
772,910 - +0.4
772,920 - +0.5
772,958 - +0.6
772,961 - -0.5
773,129 + +1.1
773,163 - GFF784 0.12 +0.2
773,208 - GFF784 0.26 +0.2
773,225 - GFF784 0.31 -0.6
773,242 - GFF784 0.36 +0.1
773,249 - GFF784 0.38 +0.1
773,416 - GFF784 0.87 -0.3
773,426 - -0.4
773,431 - +0.3
773,471 - -1.3
773,518 - +0.2
773,544 - +0.4
773,554 - -0.8
773,554 - -0.4
773,561 - +1.8
773,575 + -0.1
773,575 + +0.4
773,585 + +0.5
773,586 + +0.7
773,596 + +0.2
773,596 + -1.3
773,609 + GFF785 0.10 +0.2
773,650 + GFF785 0.13 -0.4
773,653 - GFF785 0.13 -1.1
773,653 - GFF785 0.13 -0.7
773,655 + GFF785 0.14 +0.2
773,655 + GFF785 0.14 -1.3
773,655 + GFF785 0.14 -0.1
773,655 + GFF785 0.14 +0.1
773,655 + GFF785 0.14 +0.6
773,655 + GFF785 0.14 -0.1
773,655 + GFF785 0.14 -0.5
773,655 + GFF785 0.14 -0.5
773,663 - GFF785 0.14 -0.1
773,663 - GFF785 0.14 -0.4
773,663 - GFF785 0.14 -0.2
773,663 - GFF785 0.14 +0.1
773,663 - GFF785 0.14 +0.1
773,663 - GFF785 0.14 +0.1
773,663 - GFF785 0.14 -0.4
773,663 - GFF785 0.14 -0.1
773,663 - GFF785 0.14 +1.1
773,663 - GFF785 0.14 -0.8
773,663 - GFF785 0.14 +0.5
773,666 + GFF785 0.14 -1.0
773,674 - GFF785 0.15 -0.1
773,691 + GFF785 0.16 -1.2
773,693 - GFF785 0.16 +0.1
773,706 + GFF785 0.17 -0.1
773,731 + GFF785 0.19 +0.0
773,736 + GFF785 0.20 -0.0
773,739 - GFF785 0.20 +0.6
773,744 - GFF785 0.20 -1.6
773,744 - GFF785 0.20 +0.6
773,744 - GFF785 0.20 +0.4
773,744 - GFF785 0.20 +0.1
773,746 + GFF785 0.20 -0.2
773,746 + GFF785 0.20 -0.1
773,754 - GFF785 0.21 +1.2
773,754 - GFF785 0.21 -0.4
773,754 - GFF785 0.21 -0.3
773,764 - GFF785 0.22 +0.4
773,776 + GFF785 0.22 +1.5
773,783 - GFF785 0.23 +0.3
773,784 - GFF785 0.23 -0.3
773,793 + GFF785 0.24 -0.3
773,793 + GFF785 0.24 -0.3
773,801 - GFF785 0.24 -0.4
773,801 - GFF785 0.24 -0.5
773,817 - GFF785 0.26 +0.1
773,841 - GFF785 0.27 +0.4
773,868 - GFF785 0.29 +1.0
773,893 + GFF785 0.31 -0.3
773,893 + GFF785 0.31 +0.4
773,893 + GFF785 0.31 -0.4
773,893 + GFF785 0.31 -1.3
773,935 + GFF785 0.34 -0.1
773,938 - GFF785 0.35 +0.1
773,938 - GFF785 0.35 +0.3
773,938 - GFF785 0.35 -0.4
773,941 + GFF785 0.35 -2.5
773,944 - GFF785 0.35 -0.3
773,949 - GFF785 0.35 +0.1
773,949 - GFF785 0.35 +1.0
773,949 - GFF785 0.35 -0.1
773,951 + GFF785 0.35 -0.3
773,954 - GFF785 0.36 +0.3

Or see this region's nucleotide sequence