Strain Fitness in Sphingobium sp. HT1-2 around GFF764

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF763 and GFF764 overlap by 1 nucleotidesGFF764 and GFF765 are separated by 85 nucleotides GFF763 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 747,473 to 748,924 GFF763 GFF764 - hypothetical protein, at 748,924 to 749,643 GFF764 GFF765 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 749,729 to 754,264 GFF765 Position (kb) 748 749 750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 747.931 kb on - strand, within GFF763at 747.952 kb on + strand, within GFF763at 747.968 kb on + strand, within GFF763at 748.012 kb on + strand, within GFF763at 748.036 kb on - strand, within GFF763at 748.058 kb on - strand, within GFF763at 748.093 kb on + strand, within GFF763at 748.125 kb on + strand, within GFF763at 748.149 kb on + strand, within GFF763at 748.159 kb on + strand, within GFF763at 748.179 kb on - strand, within GFF763at 748.224 kb on - strand, within GFF763at 748.249 kb on + strand, within GFF763at 748.274 kb on + strand, within GFF763at 748.301 kb on + strand, within GFF763at 748.311 kb on + strand, within GFF763at 748.318 kb on + strand, within GFF763at 748.328 kb on + strand, within GFF763at 748.375 kb on - strand, within GFF763at 748.376 kb on + strand, within GFF763at 748.382 kb on - strand, within GFF763at 748.384 kb on - strand, within GFF763at 748.409 kb on + strand, within GFF763at 748.497 kb on - strand, within GFF763at 748.538 kb on - strand, within GFF763at 748.547 kb on - strand, within GFF763at 748.596 kb on + strand, within GFF763at 748.604 kb on - strand, within GFF763at 748.613 kb on + strand, within GFF763at 748.622 kb on + strand, within GFF763at 748.627 kb on + strand, within GFF763at 748.665 kb on - strand, within GFF763at 748.688 kb on + strand, within GFF763at 748.702 kb on + strand, within GFF763at 748.710 kb on - strand, within GFF763at 748.715 kb on - strand, within GFF763at 748.742 kb on - strand, within GFF763at 748.771 kb on - strand, within GFF763at 748.786 kb on - strandat 748.786 kb on - strandat 748.812 kb on + strandat 748.833 kb on - strandat 748.833 kb on - strandat 748.833 kb on - strandat 748.890 kb on - strandat 748.890 kb on - strandat 748.890 kb on - strandat 748.926 kb on - strandat 748.985 kb on - strandat 749.021 kb on + strand, within GFF764at 749.056 kb on + strand, within GFF764at 749.056 kb on + strand, within GFF764at 749.135 kb on + strand, within GFF764at 749.151 kb on - strand, within GFF764at 749.191 kb on - strand, within GFF764at 749.193 kb on + strand, within GFF764at 749.200 kb on + strand, within GFF764at 749.200 kb on + strand, within GFF764at 749.200 kb on + strand, within GFF764at 749.200 kb on + strand, within GFF764at 749.201 kb on - strand, within GFF764at 749.205 kb on + strand, within GFF764at 749.208 kb on - strand, within GFF764at 749.208 kb on - strand, within GFF764at 749.219 kb on - strand, within GFF764at 749.282 kb on + strand, within GFF764at 749.358 kb on - strand, within GFF764at 749.386 kb on - strand, within GFF764at 749.417 kb on + strand, within GFF764at 749.434 kb on + strand, within GFF764at 749.453 kb on - strand, within GFF764at 749.499 kb on + strand, within GFF764at 749.499 kb on + strand, within GFF764at 749.507 kb on - strand, within GFF764at 749.543 kb on + strand, within GFF764at 749.561 kb on - strand, within GFF764at 749.561 kb on - strand, within GFF764at 749.567 kb on + strand, within GFF764at 749.567 kb on + strand, within GFF764at 749.570 kb on + strand, within GFF764at 749.575 kb on - strandat 749.580 kb on + strandat 749.583 kb on - strandat 749.583 kb on - strandat 749.588 kb on - strandat 749.588 kb on - strandat 749.621 kb on - strandat 749.717 kb on + strandat 749.717 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.754 kb on + strandat 749.762 kb on - strandat 749.762 kb on - strandat 749.762 kb on - strandat 749.762 kb on - strandat 749.762 kb on - strandat 749.762 kb on - strandat 749.773 kb on + strandat 749.775 kb on + strandat 749.786 kb on + strandat 749.786 kb on + strandat 749.810 kb on + strandat 749.890 kb on + strandat 749.890 kb on + strandat 749.890 kb on + strandat 749.890 kb on + strandat 749.890 kb on + strandat 749.890 kb on + strandat 749.890 kb on + strandat 749.898 kb on - strandat 749.898 kb on - strandat 749.898 kb on - strandat 749.898 kb on - strandat 749.957 kb on + strandat 750.017 kb on + strandat 750.019 kb on + strandat 750.052 kb on + strandat 750.118 kb on + strandat 750.119 kb on + strandat 750.126 kb on - strandat 750.131 kb on - strandat 750.136 kb on - strandat 750.136 kb on - strandat 750.199 kb on - strand, within GFF765at 750.216 kb on - strand, within GFF765at 750.264 kb on + strand, within GFF765at 750.272 kb on - strand, within GFF765at 750.313 kb on + strand, within GFF765at 750.316 kb on - strand, within GFF765at 750.316 kb on - strand, within GFF765at 750.346 kb on - strand, within GFF765at 750.365 kb on + strand, within GFF765at 750.365 kb on + strand, within GFF765at 750.365 kb on + strand, within GFF765at 750.365 kb on + strand, within GFF765at 750.373 kb on - strand, within GFF765at 750.373 kb on - strand, within GFF765at 750.373 kb on - strand, within GFF765at 750.407 kb on - strand, within GFF765at 750.407 kb on - strand, within GFF765at 750.407 kb on - strand, within GFF765at 750.441 kb on + strand, within GFF765at 750.441 kb on + strand, within GFF765at 750.460 kb on + strand, within GFF765at 750.460 kb on + strand, within GFF765at 750.469 kb on - strand, within GFF765at 750.504 kb on - strand, within GFF765at 750.554 kb on - strand, within GFF765at 750.610 kb on + strand, within GFF765at 750.610 kb on + strand, within GFF765at 750.617 kb on + strand, within GFF765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
747,931 - GFF763 0.32 -2.3
747,952 + GFF763 0.33 -0.6
747,968 + GFF763 0.34 -0.8
748,012 + GFF763 0.37 -2.6
748,036 - GFF763 0.39 -2.5
748,058 - GFF763 0.40 -0.2
748,093 + GFF763 0.43 -1.8
748,125 + GFF763 0.45 -1.8
748,149 + GFF763 0.47 -2.3
748,159 + GFF763 0.47 -0.7
748,179 - GFF763 0.49 -1.4
748,224 - GFF763 0.52 -3.0
748,249 + GFF763 0.53 -2.5
748,274 + GFF763 0.55 -1.6
748,301 + GFF763 0.57 -1.7
748,311 + GFF763 0.58 -2.0
748,318 + GFF763 0.58 -2.0
748,328 + GFF763 0.59 -2.1
748,375 - GFF763 0.62 -0.1
748,376 + GFF763 0.62 -1.7
748,382 - GFF763 0.63 -2.3
748,384 - GFF763 0.63 -3.0
748,409 + GFF763 0.64 -1.9
748,497 - GFF763 0.71 -2.0
748,538 - GFF763 0.73 -1.0
748,547 - GFF763 0.74 -3.3
748,596 + GFF763 0.77 +0.1
748,604 - GFF763 0.78 -1.2
748,613 + GFF763 0.79 -1.4
748,622 + GFF763 0.79 -1.2
748,627 + GFF763 0.79 -2.3
748,665 - GFF763 0.82 -2.3
748,688 + GFF763 0.84 -2.5
748,702 + GFF763 0.85 -2.7
748,710 - GFF763 0.85 -2.7
748,715 - GFF763 0.86 -1.8
748,742 - GFF763 0.87 -3.3
748,771 - GFF763 0.89 -3.2
748,786 - +0.1
748,786 - -1.8
748,812 + -1.9
748,833 - -1.6
748,833 - -1.5
748,833 - -2.7
748,890 - -3.3
748,890 - -3.2
748,890 - -2.5
748,926 - -3.1
748,985 - -3.1
749,021 + GFF764 0.13 +0.1
749,056 + GFF764 0.18 +0.5
749,056 + GFF764 0.18 -1.7
749,135 + GFF764 0.29 +0.9
749,151 - GFF764 0.32 -2.2
749,191 - GFF764 0.37 -1.2
749,193 + GFF764 0.37 +0.8
749,200 + GFF764 0.38 -1.7
749,200 + GFF764 0.38 -0.5
749,200 + GFF764 0.38 -1.4
749,200 + GFF764 0.38 +0.1
749,201 - GFF764 0.38 -3.4
749,205 + GFF764 0.39 +0.0
749,208 - GFF764 0.39 -1.2
749,208 - GFF764 0.39 -1.6
749,219 - GFF764 0.41 -2.8
749,282 + GFF764 0.50 -1.5
749,358 - GFF764 0.60 -2.4
749,386 - GFF764 0.64 -2.0
749,417 + GFF764 0.68 -1.9
749,434 + GFF764 0.71 +1.6
749,453 - GFF764 0.73 -2.4
749,499 + GFF764 0.80 -0.7
749,499 + GFF764 0.80 -1.2
749,507 - GFF764 0.81 -2.3
749,543 + GFF764 0.86 -0.1
749,561 - GFF764 0.88 -3.6
749,561 - GFF764 0.88 -0.9
749,567 + GFF764 0.89 +0.2
749,567 + GFF764 0.89 +0.6
749,570 + GFF764 0.90 +0.7
749,575 - -0.1
749,580 + -0.4
749,583 - -1.1
749,583 - -1.9
749,588 - -3.1
749,588 - -1.0
749,621 - -4.1
749,717 + +0.4
749,717 + -0.1
749,754 + -3.7
749,754 + -2.6
749,754 + -2.0
749,754 + -3.0
749,754 + -1.9
749,754 + -1.9
749,754 + -2.6
749,754 + -1.4
749,754 + -3.4
749,754 + -1.7
749,762 - -1.8
749,762 - -1.8
749,762 - -1.2
749,762 - -2.0
749,762 - -2.7
749,762 - -2.9
749,773 + -1.6
749,775 + -1.9
749,786 + -2.7
749,786 + -1.6
749,810 + -1.5
749,890 + -2.4
749,890 + -2.0
749,890 + -1.9
749,890 + -0.3
749,890 + -2.9
749,890 + -0.9
749,890 + +1.4
749,898 - -2.4
749,898 - -0.9
749,898 - -1.4
749,898 - -3.3
749,957 + -2.7
750,017 + -2.7
750,019 + -0.8
750,052 + -2.1
750,118 + -1.9
750,119 + -2.7
750,126 - -3.2
750,131 - -0.8
750,136 - -3.0
750,136 - -0.2
750,199 - GFF765 0.10 -2.5
750,216 - GFF765 0.11 -2.3
750,264 + GFF765 0.12 -2.6
750,272 - GFF765 0.12 -2.1
750,313 + GFF765 0.13 -1.6
750,316 - GFF765 0.13 -3.7
750,316 - GFF765 0.13 -2.7
750,346 - GFF765 0.14 -1.9
750,365 + GFF765 0.14 -0.4
750,365 + GFF765 0.14 -0.9
750,365 + GFF765 0.14 -1.4
750,365 + GFF765 0.14 -2.5
750,373 - GFF765 0.14 -3.0
750,373 - GFF765 0.14 -2.1
750,373 - GFF765 0.14 -2.3
750,407 - GFF765 0.15 -1.9
750,407 - GFF765 0.15 -3.4
750,407 - GFF765 0.15 -2.7
750,441 + GFF765 0.16 -2.0
750,441 + GFF765 0.16 -2.9
750,460 + GFF765 0.16 -1.5
750,460 + GFF765 0.16 -0.6
750,469 - GFF765 0.16 -2.5
750,504 - GFF765 0.17 -2.4
750,554 - GFF765 0.18 -0.8
750,610 + GFF765 0.19 -1.4
750,610 + GFF765 0.19 -1.5
750,617 + GFF765 0.20 -0.4

Or see this region's nucleotide sequence