Strain Fitness in Sphingobium sp. HT1-2 around GFF745

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF744 and GFF745 are separated by 133 nucleotidesGFF745 and GFF746 are separated by 131 nucleotides GFF744 - Dehydrogenase, at 731,229 to 732,014 GFF744 GFF745 - Non-heme chloroperoxidase, at 732,148 to 732,978 GFF745 GFF746 - Transcriptional regulator, AraC family, at 733,110 to 734,093 GFF746 Position (kb) 732 733Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 731.198 kb on + strandat 731.240 kb on + strandat 731.248 kb on - strandat 731.248 kb on - strandat 731.260 kb on + strandat 731.273 kb on + strandat 731.277 kb on + strandat 731.281 kb on - strandat 731.281 kb on - strandat 731.281 kb on - strandat 731.325 kb on + strand, within GFF744at 731.333 kb on - strand, within GFF744at 731.334 kb on + strand, within GFF744at 731.334 kb on + strand, within GFF744at 731.341 kb on - strand, within GFF744at 731.341 kb on - strand, within GFF744at 731.364 kb on - strand, within GFF744at 731.370 kb on + strand, within GFF744at 731.375 kb on + strand, within GFF744at 731.375 kb on + strand, within GFF744at 731.378 kb on - strand, within GFF744at 731.378 kb on - strand, within GFF744at 731.378 kb on - strand, within GFF744at 731.378 kb on - strand, within GFF744at 731.412 kb on + strand, within GFF744at 731.431 kb on - strand, within GFF744at 731.433 kb on + strand, within GFF744at 731.441 kb on - strand, within GFF744at 731.441 kb on - strand, within GFF744at 731.467 kb on - strand, within GFF744at 731.467 kb on - strand, within GFF744at 731.477 kb on - strand, within GFF744at 731.477 kb on - strand, within GFF744at 731.487 kb on - strand, within GFF744at 731.496 kb on - strand, within GFF744at 731.511 kb on + strand, within GFF744at 731.532 kb on + strand, within GFF744at 731.532 kb on + strand, within GFF744at 731.532 kb on + strand, within GFF744at 731.535 kb on - strand, within GFF744at 731.539 kb on + strand, within GFF744at 731.540 kb on - strand, within GFF744at 731.544 kb on + strand, within GFF744at 731.547 kb on - strand, within GFF744at 731.547 kb on - strand, within GFF744at 731.552 kb on - strand, within GFF744at 731.565 kb on - strand, within GFF744at 731.567 kb on - strand, within GFF744at 731.569 kb on + strand, within GFF744at 731.605 kb on + strand, within GFF744at 731.605 kb on + strand, within GFF744at 731.605 kb on + strand, within GFF744at 731.613 kb on - strand, within GFF744at 731.621 kb on + strand, within GFF744at 731.626 kb on - strand, within GFF744at 731.661 kb on - strand, within GFF744at 731.666 kb on - strand, within GFF744at 731.682 kb on + strand, within GFF744at 731.690 kb on + strand, within GFF744at 731.694 kb on - strand, within GFF744at 731.717 kb on - strand, within GFF744at 731.725 kb on + strand, within GFF744at 731.730 kb on + strand, within GFF744at 731.730 kb on + strand, within GFF744at 731.778 kb on - strand, within GFF744at 731.805 kb on - strand, within GFF744at 731.854 kb on - strand, within GFF744at 731.929 kb on - strand, within GFF744at 731.930 kb on - strand, within GFF744at 731.955 kb on + strandat 731.956 kb on + strandat 731.979 kb on - strandat 732.004 kb on - strandat 732.004 kb on - strandat 732.011 kb on - strandat 732.069 kb on - strandat 732.075 kb on - strandat 732.075 kb on - strandat 732.075 kb on - strandat 732.075 kb on - strandat 732.075 kb on - strandat 732.105 kb on + strandat 732.105 kb on + strandat 732.107 kb on + strandat 732.130 kb on + strandat 732.130 kb on + strandat 732.139 kb on + strandat 732.139 kb on + strandat 732.171 kb on + strandat 732.171 kb on + strandat 732.176 kb on + strandat 732.176 kb on + strandat 732.179 kb on - strandat 732.179 kb on - strandat 732.179 kb on - strandat 732.184 kb on - strandat 732.187 kb on + strandat 732.187 kb on + strandat 732.187 kb on + strandat 732.187 kb on + strandat 732.195 kb on - strandat 732.197 kb on + strandat 732.205 kb on - strandat 732.214 kb on + strandat 732.214 kb on + strandat 732.232 kb on + strand, within GFF745at 732.268 kb on - strand, within GFF745at 732.301 kb on - strand, within GFF745at 732.311 kb on + strand, within GFF745at 732.311 kb on + strand, within GFF745at 732.315 kb on + strand, within GFF745at 732.389 kb on + strand, within GFF745at 732.393 kb on + strand, within GFF745at 732.397 kb on - strand, within GFF745at 732.404 kb on + strand, within GFF745at 732.450 kb on - strand, within GFF745at 732.467 kb on - strand, within GFF745at 732.490 kb on + strand, within GFF745at 732.490 kb on + strand, within GFF745at 732.490 kb on + strand, within GFF745at 732.493 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.544 kb on + strand, within GFF745at 732.580 kb on - strand, within GFF745at 732.603 kb on + strand, within GFF745at 732.621 kb on - strand, within GFF745at 732.641 kb on + strand, within GFF745at 732.707 kb on - strand, within GFF745at 732.712 kb on - strand, within GFF745at 732.714 kb on + strand, within GFF745at 732.715 kb on + strand, within GFF745at 732.722 kb on - strand, within GFF745at 732.723 kb on - strand, within GFF745at 732.773 kb on + strand, within GFF745at 732.792 kb on + strand, within GFF745at 732.813 kb on - strand, within GFF745at 732.816 kb on - strand, within GFF745at 732.829 kb on + strand, within GFF745at 732.837 kb on - strand, within GFF745at 732.912 kb on - strandat 732.923 kb on + strandat 732.923 kb on + strandat 732.930 kb on - strandat 732.931 kb on - strandat 733.033 kb on + strandat 733.033 kb on + strandat 733.035 kb on + strandat 733.054 kb on + strandat 733.101 kb on + strandat 733.101 kb on + strandat 733.108 kb on - strandat 733.109 kb on - strandat 733.113 kb on + strandat 733.114 kb on - strandat 733.128 kb on - strandat 733.146 kb on + strandat 733.173 kb on - strandat 733.179 kb on + strandat 733.179 kb on + strandat 733.189 kb on + strandat 733.189 kb on + strandat 733.197 kb on - strandat 733.197 kb on - strandat 733.217 kb on + strand, within GFF746at 733.237 kb on + strand, within GFF746at 733.237 kb on + strand, within GFF746at 733.237 kb on + strand, within GFF746at 733.245 kb on - strand, within GFF746at 733.245 kb on - strand, within GFF746at 733.245 kb on - strand, within GFF746at 733.294 kb on + strand, within GFF746at 733.294 kb on + strand, within GFF746at 733.294 kb on + strand, within GFF746at 733.294 kb on + strand, within GFF746at 733.302 kb on - strand, within GFF746at 733.302 kb on - strand, within GFF746at 733.302 kb on - strand, within GFF746at 733.302 kb on - strand, within GFF746at 733.302 kb on - strand, within GFF746at 733.302 kb on - strand, within GFF746at 733.311 kb on + strand, within GFF746at 733.311 kb on + strand, within GFF746at 733.319 kb on - strand, within GFF746at 733.324 kb on - strand, within GFF746at 733.326 kb on + strand, within GFF746at 733.335 kb on + strand, within GFF746at 733.364 kb on + strand, within GFF746at 733.369 kb on + strand, within GFF746at 733.372 kb on - strand, within GFF746at 733.377 kb on - strand, within GFF746at 733.377 kb on - strand, within GFF746at 733.377 kb on - strand, within GFF746at 733.394 kb on - strand, within GFF746at 733.394 kb on - strand, within GFF746at 733.423 kb on + strand, within GFF746at 733.431 kb on - strand, within GFF746at 733.463 kb on + strand, within GFF746at 733.471 kb on - strand, within GFF746at 733.506 kb on - strand, within GFF746at 733.513 kb on - strand, within GFF746at 733.518 kb on + strand, within GFF746at 733.558 kb on - strand, within GFF746at 733.610 kb on + strand, within GFF746at 733.615 kb on + strand, within GFF746at 733.618 kb on - strand, within GFF746at 733.627 kb on + strand, within GFF746at 733.629 kb on - strand, within GFF746at 733.632 kb on + strand, within GFF746at 733.773 kb on + strand, within GFF746at 733.781 kb on - strand, within GFF746at 733.781 kb on - strand, within GFF746at 733.786 kb on - strand, within GFF746at 733.843 kb on - strand, within GFF746at 733.867 kb on + strand, within GFF746at 733.889 kb on - strand, within GFF746at 733.899 kb on + strand, within GFF746at 733.911 kb on + strand, within GFF746at 733.921 kb on + strand, within GFF746at 733.929 kb on - strand, within GFF746at 733.955 kb on + strand, within GFF746at 733.960 kb on + strand, within GFF746at 733.963 kb on - strand, within GFF746

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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731,198 + -1.1
731,240 + +0.6
731,248 - +1.6
731,248 - +1.0
731,260 + -0.1
731,273 + -1.8
731,277 + -3.0
731,281 - -0.6
731,281 - -0.1
731,281 - -0.3
731,325 + GFF744 0.12 +1.1
731,333 - GFF744 0.13 -0.3
731,334 + GFF744 0.13 -1.2
731,334 + GFF744 0.13 -0.5
731,341 - GFF744 0.14 -0.9
731,341 - GFF744 0.14 -0.0
731,364 - GFF744 0.17 +0.2
731,370 + GFF744 0.18 -0.4
731,375 + GFF744 0.19 +0.1
731,375 + GFF744 0.19 +1.3
731,378 - GFF744 0.19 -0.3
731,378 - GFF744 0.19 -0.9
731,378 - GFF744 0.19 -0.8
731,378 - GFF744 0.19 -0.1
731,412 + GFF744 0.23 +1.1
731,431 - GFF744 0.26 +0.3
731,433 + GFF744 0.26 +0.1
731,441 - GFF744 0.27 +2.4
731,441 - GFF744 0.27 +1.7
731,467 - GFF744 0.30 -0.1
731,467 - GFF744 0.30 -1.2
731,477 - GFF744 0.32 -0.3
731,477 - GFF744 0.32 +0.9
731,487 - GFF744 0.33 -0.3
731,496 - GFF744 0.34 -0.3
731,511 + GFF744 0.36 +0.1
731,532 + GFF744 0.39 -0.5
731,532 + GFF744 0.39 +1.1
731,532 + GFF744 0.39 -0.4
731,535 - GFF744 0.39 -0.4
731,539 + GFF744 0.39 +0.7
731,540 - GFF744 0.40 -1.5
731,544 + GFF744 0.40 +0.6
731,547 - GFF744 0.40 +0.4
731,547 - GFF744 0.40 +0.6
731,552 - GFF744 0.41 +0.4
731,565 - GFF744 0.43 -2.0
731,567 - GFF744 0.43 +0.5
731,569 + GFF744 0.43 +0.4
731,605 + GFF744 0.48 +0.2
731,605 + GFF744 0.48 +0.6
731,605 + GFF744 0.48 -0.6
731,613 - GFF744 0.49 -0.4
731,621 + GFF744 0.50 +2.1
731,626 - GFF744 0.51 +2.4
731,661 - GFF744 0.55 -0.6
731,666 - GFF744 0.56 -0.3
731,682 + GFF744 0.58 -0.1
731,690 + GFF744 0.59 -0.1
731,694 - GFF744 0.59 -0.1
731,717 - GFF744 0.62 -0.2
731,725 + GFF744 0.63 -0.5
731,730 + GFF744 0.64 -0.3
731,730 + GFF744 0.64 +0.3
731,778 - GFF744 0.70 +0.4
731,805 - GFF744 0.73 +0.5
731,854 - GFF744 0.80 -0.3
731,929 - GFF744 0.89 +0.4
731,930 - GFF744 0.89 -2.1
731,955 + -0.9
731,956 + +0.4
731,979 - +0.5
732,004 - +0.3
732,004 - -0.7
732,011 - -0.1
732,069 - -0.5
732,075 - +1.7
732,075 - +1.2
732,075 - +1.2
732,075 - +0.7
732,075 - +0.2
732,105 + -0.5
732,105 + +0.1
732,107 + +0.2
732,130 + +0.3
732,130 + +0.3
732,139 + +0.4
732,139 + -0.5
732,171 + -0.5
732,171 + +1.4
732,176 + +1.2
732,176 + -1.5
732,179 - -0.3
732,179 - -0.2
732,179 - +0.5
732,184 - -0.6
732,187 + -1.2
732,187 + -1.1
732,187 + -0.5
732,187 + +0.8
732,195 - +0.2
732,197 + -0.8
732,205 - -1.2
732,214 + -0.5
732,214 + -0.5
732,232 + GFF745 0.10 -1.0
732,268 - GFF745 0.14 +0.5
732,301 - GFF745 0.18 +0.8
732,311 + GFF745 0.20 +0.4
732,311 + GFF745 0.20 +1.9
732,315 + GFF745 0.20 -0.6
732,389 + GFF745 0.29 -0.1
732,393 + GFF745 0.29 -0.2
732,397 - GFF745 0.30 +0.2
732,404 + GFF745 0.31 +1.4
732,450 - GFF745 0.36 +0.2
732,467 - GFF745 0.38 +0.2
732,490 + GFF745 0.41 +0.9
732,490 + GFF745 0.41 -1.4
732,490 + GFF745 0.41 +0.0
732,493 - GFF745 0.42 -0.5
732,498 - GFF745 0.42 -1.2
732,498 - GFF745 0.42 +0.4
732,498 - GFF745 0.42 +0.5
732,498 - GFF745 0.42 -0.7
732,498 - GFF745 0.42 +0.6
732,498 - GFF745 0.42 -0.9
732,544 + GFF745 0.48 -0.9
732,580 - GFF745 0.52 -0.9
732,603 + GFF745 0.55 -0.1
732,621 - GFF745 0.57 -0.9
732,641 + GFF745 0.59 +0.6
732,707 - GFF745 0.67 +1.1
732,712 - GFF745 0.68 +1.1
732,714 + GFF745 0.68 -0.1
732,715 + GFF745 0.68 -0.3
732,722 - GFF745 0.69 +0.2
732,723 - GFF745 0.69 +0.1
732,773 + GFF745 0.75 +0.8
732,792 + GFF745 0.77 -0.8
732,813 - GFF745 0.80 -1.1
732,816 - GFF745 0.80 +1.6
732,829 + GFF745 0.82 -0.1
732,837 - GFF745 0.83 -0.8
732,912 - -0.5
732,923 + -0.5
732,923 + -1.5
732,930 - +1.0
732,931 - +0.4
733,033 + +0.7
733,033 + +1.2
733,035 + -2.2
733,054 + +0.4
733,101 + -0.2
733,101 + +0.5
733,108 - -1.0
733,109 - +1.2
733,113 + +0.2
733,114 - +0.9
733,128 - -1.3
733,146 + +0.9
733,173 - -1.0
733,179 + +1.1
733,179 + -1.6
733,189 + +0.8
733,189 + -1.7
733,197 - -0.5
733,197 - +1.0
733,217 + GFF746 0.11 -0.6
733,237 + GFF746 0.13 +0.1
733,237 + GFF746 0.13 +0.4
733,237 + GFF746 0.13 -0.7
733,245 - GFF746 0.14 -0.2
733,245 - GFF746 0.14 +0.2
733,245 - GFF746 0.14 +0.8
733,294 + GFF746 0.19 +0.9
733,294 + GFF746 0.19 +1.7
733,294 + GFF746 0.19 +0.1
733,294 + GFF746 0.19 +0.4
733,302 - GFF746 0.20 -0.2
733,302 - GFF746 0.20 +0.1
733,302 - GFF746 0.20 +0.2
733,302 - GFF746 0.20 -0.5
733,302 - GFF746 0.20 +0.5
733,302 - GFF746 0.20 +2.0
733,311 + GFF746 0.20 +0.3
733,311 + GFF746 0.20 +0.6
733,319 - GFF746 0.21 +0.2
733,324 - GFF746 0.22 +0.9
733,326 + GFF746 0.22 -0.5
733,335 + GFF746 0.23 +0.3
733,364 + GFF746 0.26 +0.0
733,369 + GFF746 0.26 -0.5
733,372 - GFF746 0.27 +1.3
733,377 - GFF746 0.27 +0.2
733,377 - GFF746 0.27 +0.4
733,377 - GFF746 0.27 +0.6
733,394 - GFF746 0.29 -0.8
733,394 - GFF746 0.29 -0.7
733,423 + GFF746 0.32 -0.1
733,431 - GFF746 0.33 -0.0
733,463 + GFF746 0.36 -1.6
733,471 - GFF746 0.37 +0.1
733,506 - GFF746 0.40 -0.0
733,513 - GFF746 0.41 -0.4
733,518 + GFF746 0.41 +1.7
733,558 - GFF746 0.46 +0.0
733,610 + GFF746 0.51 -0.6
733,615 + GFF746 0.51 +1.4
733,618 - GFF746 0.52 +0.6
733,627 + GFF746 0.53 +1.3
733,629 - GFF746 0.53 -0.3
733,632 + GFF746 0.53 +0.5
733,773 + GFF746 0.67 -1.5
733,781 - GFF746 0.68 +1.4
733,781 - GFF746 0.68 +1.7
733,786 - GFF746 0.69 -2.0
733,843 - GFF746 0.74 -1.1
733,867 + GFF746 0.77 +0.0
733,889 - GFF746 0.79 +0.1
733,899 + GFF746 0.80 -1.1
733,911 + GFF746 0.81 +1.5
733,921 + GFF746 0.82 +0.4
733,929 - GFF746 0.83 -0.8
733,955 + GFF746 0.86 -0.3
733,960 + GFF746 0.86 +0.0
733,963 - GFF746 0.87 -0.1

Or see this region's nucleotide sequence